ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1747

TrivialName: PA14_20570

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_20570

PAO1 Ortholog Locus: PA3365

Sequence Length: 1116

Protein Length: 371

Start: 1769732

Stop: 1770847

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAA54405.1| (X77160) amiB [Pseudomonas aeruginosa] Identities = 369/371 (99%), Positives = 370/371 (99%)

Sequence:

ATGCCTTTTCTGAGCGACATGCTCGACCAGTCCCGCCGGCAGCAGGACGAGGAACAGGCCCTGGCGCGGGAG
AATCTCGCCGAGGCGAGTCTGCTCCAGGCCCACCTGAGCCACCGCAGCGCCCTGCACAGCCGCTTCCGTTTC
GACCCGGCGGCGGTGATGGACTGCCTGCGCGCCGAGGTGCTCGGCCAGGAACCGGCGCTACAGGCCGTCGAG
GACATGCTCAAGGTGGTTCGCGCGGACATCGCCGACCCGCGCCGTCCGCTGTTCAGCGCGCTGTTCCTCGGC
CCCACTGGGGTCGGCAAGACCGAGATCGTGCGCGCCCTGGCCAGGGCCCTGCACGGCGACGCCGAGGGGTTC
TGCCGGGTGGACATGAATACCCTGTCCCAGGAGCACTATGCCGCCGCCCTCACCGGTGCGCCGCCGGGCTAC
GTCGGGGCGAAGGAGGGCACCACGCTGTTGGAGCAGGACAAGCTGGACGGCAGTCCCGGGCGCCCCGGCATC
GTTCTCTTCGACGAACTGGAGAAGGCCAGCCCGGAAGTGGTCCATGCGCTGCTCAACGTGCTCGACAACGGC
CTGCTGCGGGTCGCTTCCGGCGAACGCACCTACCATTTCCGCAACACCCTGGTGTTCATGACCAGCAATCTC
TGCGCCCATGAGATCCAGCGCTACGACGAGCGTCGCCAACGCCTGCCCTGGCGCCTGCTGCCGGTCGGCGGC
GAACGCCGGCGGCGGGACATCGACGGGATGGTCCGGGCCCGGCTGCTGAAGACCTTCTCGCCGGAGTTCGTC
AATCGTCTCGATAGCGTGGTCACCTTCAACTGGATCGAACGCAACGTCGTCGCGCGCCTGGTCGAGTTGGAG
GTGCAGCGGCTCAACCGGCGCCTGGAGAAGCATCGCTGCCGCCTGGAGGCGACCCCGGAGGTGCTGGCGAAG
ATCGCCCGCGCCGGCTTCGACCGGCAGTTCGGCGCCCGTGCGTTGCGCCGCAGTGTCCGTCATCATCTCGAG
GTACCGCTGGCCGAGCATCTGCTCGACCACCACCAGCCGGGCGACGGGAACTGCACGACCTACCTGGCGAGC
CTGGAGCACGAGCGGGTTCGCTTCGTGCGGCGCTGA

Translation:

MPFLSDMLDQSRRQQDEEQALARENLAEASLLQAHLSHRSALHSRFRFDPAAVMDCLRAEVLGQEPALQAVE
DMLKVVRADIADPRRPLFSALFLGPTGVGKTEIVRALARALHGDAEGFCRVDMNTLSQEHYAAALTGAPPGY
VGAKEGTTLLEQDKLDGSPGRPGIVLFDELEKASPEVVHALLNVLDNGLLRVASGERTYHFRNTLVFMTSNL
CAHEIQRYDERRQRLPWRLLPVGGERRRRDIDGMVRARLLKTFSPEFVNRLDSVVTFNWIERNVVARLVELE
VQRLNRRLEKHRCRLEATPEVLAKIARAGFDRQFGARALRRSVRHHLEVPLAEHLLDHHQPGDGNCTTYLAS
LEHERVRFVRR*

AnnotationID:1756 GeneID:1747

AnnotatorUID: danlee

Modification Date/Time: 2006-02-03 12:12:25

Gene Name:

Confidence Code: 3

GeneProduct: putative ATPases with chaperone activity, ATP-binding subunit

Cell Localization: (1) Cytoplasmic

Synonyms: PA3365, amiB

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (9) Chaperones & heat shock proteins

Alternate Gene Product Name: ATP-dependent protease

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAA22991.1| (M76451) ATP-dependent protease [Brevibacterium sp.]
          Length = 351

 Score =  232 bits (592), Expect = 2e-60
 Identities = 125/298 (41%), Positives = 181/298 (60%), Gaps = 3/298 (1%)

>gb|AAP07184.1| (AE016998) Negative regulator of genetic competence clpC/mecB
           [Bacillus cereus ATCC 14579]
          Length = 811

 Score =  211 bits (538), Expect = 4e-54
 Identities = 121/288 (42%), Positives = 177/288 (61%), Gaps = 11/288 (3%)

>gb|AAM25468.1| (AE013175) ATPases with chaperone activity, ATP-binding subunit
           [Thermoanaerobacter tengcongensis]
          Length = 816

 Score =  206 bits (525), Expect = 1e-52
 Identities = 117/321 (36%), Positives = 193/321 (60%), Gaps = 20/321 (6%)

Structural Features:

Genomic Context:

Comment:

ReferenceID:3497

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20644

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32193

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1747_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1747

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

94494 emb|CAA54405.1| (X77160) amiB [Pseudomonas aeruginosa] 371 99.46 99.73 0 1895.0

3067 PA3365_tr translation of PA3365 371 99.19 99.73 0 1890.0

94495 gb|AAG06753.1|AE004758_10 (AE004758) probable chaperone [Pseudomonas aeruginosa PAO1] 371 99.19 99.73 0 1890.0

94496 gb|AAA22991.1| (M76451) ATP-dependent protease [Brevibacterium sp.] 380 37.10 54.73 38 596.0

94497 gb|AAP07184.1| (AE016998) Negative regulator of genetic competence clpC/mecB [Bacillus cereus ATCC 14579] 852 16.54 24.41 522 551.0

GC ORFID: `44749`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3365`	Glimmer Score:
Start: `3184200`	Stop: `3183085`
Length: `1116`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3365 translation of PA3365`	Homolog Bit Score `732.0`
Other Homologs: `t_PA3365 (ORF: GLIMMER)`
GC ORF Sequence
ATGCCTTTTCTGAGCGACATGCTCGACCAGTCCCGCCGGCAGCAGGACGAGGAACAGGCCCTGGCGCGGGAG AATCTCGCCGAGGCGAGTCTGCTCCAGGCCCACCTGAGCCACCGCAGCGCCCTGCACAGCCGCTTCCGTTTC GACCCGGCGGCGGTGATGGACTGCCTGCGCGCCGAGGTGCTCGGCCAGGAACCGGCGCTACAGGCCGTCGAG GACATGCTCAAGGTGGTTCGCGCGGACATCGCCGACCCGCGCCGTCCGCTGTTCAGCGCGCTGTTCCTCGGC CCCACTGGGGTCGGCAAGACCGAGATCGTGCGCGCCCTGGCCAGGGCCCTGCACGGCGACGCCGAGGGGTTC TGCCGGGTGGACATGAATACCCTGTCCCAGGAGCACTATGCCGCCGCCCTCACCGGTGCGCCGCCGGGCTAC GTCGGGGCGAAGGAGGGCACCACGCTGTTGGAGCAGGACAAGCTGGACGGCAGTCCCGGGCGCCCCGGCATC GTTCTCTTCGACGAACTGGAGAAGGCCAGCCCGGAAGTGGTCCATGCGCTGCTCAACGTGCTCGACAACGGC CTGCTGCGGGTCGCTTCCGGCGAACGCACCTACCATTTCCGCAACACCCTGGTGTTCATGACCAGCAATCTC TGCGCCCATGAGATCCAGCGCTACGACGAGCGTCGCCAACGCCTGCCCTGGCGCCTGCTGCCGGTCGGCGGC GAACGCCGGCGGCGGGACATCGACGGGATGGTCCGGGCCCGGCTGCTGAAGACCTTCTCGCCGGAGTTCGTC AATCGTCTCGATAGCGTGGTCACCTTCAACTGGATCGAACGCAACGTCGTCGCGCGCCTGGTCGAGTTGGAG GTGCAGCGGCTCAACCGGCGCCTGGAGAAGCATCGCTGCCGCCTGGAGGCGACCCCGGAGGTGCTGGCGAAG ATCGCCCGCGCCGGCTTCGACCGGCAGTTCGGCGCCCGTGCGTTGCGCCGCAGTGTCCGTCATCATCTCGAG GTACCGCTGGCCGAGCATCTGCTCGACCACCACCAGCCGGGCGACGGGAACTGCACGACCTACCTGGCGAGC CTGGAGCACGAGCGGGTTCGCTTCGTGCGGCGCTGA