ViewGene
Locus Name:
GeneID:
Location:

GeneID:1704
TrivialName: PA14_14910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14910
PAO1 Ortholog Locus:PA3800
Sequence Length:1143
Protein Length:380
Start: 1266094
Stop: 1267236
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07187.1|AE004798_10 (AE004798) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 379/380 (99%), Positives = 380/380 (100%)
Sequence:
ATGGTGCAATGGAAACACGCGGCGCTGCTCGCCCTGGCCCTGGCGGTCGTGGGTTGCAGCAGCAACAGCAAG
AAGGAACTCCCGCCCGCCGAACTGACCGACTTCAAAGAGGAAGTCGTGTTGAGCAAGCAGTGGAGCCGCTCG
GTCGGTGATGGCCAGGGCGACCTGTACAACCTGCTCGAACCGGCCGTCGATGGTTCCAGCATCTACGCCGCG
TCCGCCGAAGGGCGGGTGATGGCGATCCAGCGCGAGACCGGCGACGTGCTCTGGAAGAAGGACCTGGAACGT
CCGGTTTCCGGCGGTGTCGGCGTTGGCTACGGCCTGGTGCTGGTGGGTACCCTGCGCGGTGACGTGATCGCC
CTCGACGAAGCCACCGGCAAGAAGAAGTGGACCAAGCGAGTCAACAGCGAAGTGCTGTCGGCGCCGGCCACC
AACGGCGACGTGGTGGTGGTGCAGACCCAGGACGACAAGCTGATCGGCCTCGATGCGGCCAGCGGCGACCAG
CGCTGGATCTACGAAAGCACCGTGCCGGTGCTGACCCTGCGCGGCACCGGCGCGCCGCTGATCGCCGGCAAC
ATGGCCCTGGCTGGCCTGGCCAGCGGCAAGGTGGTGGCGGTCGACGTACAGCGCGGCCTGCCGATCTGGGAG
CAGCGGGTAGCGATTCCCCAGGGGCGTTCCGAACTGGATCGCGTGGTGGACATCGACGGCGGCCTCCTGCTG
TCCGGCGACACCCTCTACGTGGTCAGCTACCAGGGCCGTGCCGCGGCGCTGGACGTGAACAGCGGCCGCCTG
CTCTGGCAGCGCGAAGCGTCGAGCTACGTCGGCGTCGCCGAAGGCTTCGGCAATATCTACGTCAGCCAGGCC
AGCGGTTCGGTGGAAGGCCTGGATTCGCGCGGCGCTTCTTCGCTGTGGAACAACGACGCCCTGGCGCGTCGC
CAACTGTCGGCTCCGGCGGTGTTCTCCAGCAACGTGGTGGTCGGCGACCTGGAAGGCTACGTGCACCTGCTG
AGCCAGGTGGACGGTCGCTTCGTTGGTCGCGAGCGGGTCGACAGCGATGGCGTGCGGGTTCGTCCGCTGGTG
GTCGGGAGCTGGATGTACGTGTTCGGCAACGGTGGCAAGCTCGTCGCCTACACCATCCGCTAG
Translation:
MVQWKHAALLALALAVVGCSSNSKKELPPAELTDFKEEVVLSKQWSRSVGDGQGDLYNLLEPAVDGSSIYAA
SAEGRVMAIQRETGDVLWKKDLERPVSGGVGVGYGLVLVGTLRGDVIALDEATGKKKWTKRVNSEVLSAPAT
NGDVVVVQTQDDKLIGLDAASGDQRWIYESTVPVLTLRGTGAPLIAGNMALAGLASGKVVAVDVQRGLPIWE
QRVAIPQGRSELDRVVDIDGGLLLSGDTLYVVSYQGRAAALDVNSGRLLWQREASSYVGVAEGFGNIYVSQA
SGSVEGLDSRGASSLWNNDALARRQLSAPAVFSSNVVVGDLEGYVHLLSQVDGRFVGRERVDSDGVRVRPLV
VGSWMYVFGNGGKLVAYTIR*
AnnotationID:1713GeneID:1704
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 10:10:59
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3800
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3411




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20558




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31757




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1704_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1704
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2998
                           PA3800_tr
                           translation of PA3800
                           380
                           99.73
                           99.99
                           0
                           1918.0
     

     
     
93269
                           gb|AAG07187.1|AE004798_10
                           (AE004798) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           380
                           99.73
                           99.99
                           0
                           1918.0
     

     
     
93270
                           gb|AAN66481.1|AE016276_16
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           380
                           71.31
                           84.73
                           0
                           1451.0
     

     
     
93271
                           gb|AAO54958.1|
                           (AE016860) PQQ enzyme repeat domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           384
                           69.01
                           84.63
                           4
                           1448.0
     

     






      

          
GC ORFID: 44706How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3800Glimmer Score: 

          
Start: 3687844Stop: 3686702

          
Length: 1143


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3800 translation of PA3800Homolog Bit Score 743.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4531 (ORF: BLASTX 565.0), t_PA3800 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTGCAATGGAAACACGCGGCGCTGCTCGCCCTGGCCCTGGCGGTCGTGGGTTGCAGCAGCAACAGCAAG 
AAGGAACTCCCGCCCGCCGAACTGACCGACTTCAAAGAGGAAGTCGTGTTGAGCAAGCAGTGGAGCCGCTCG 
GTCGGTGATGGCCAGGGCGACCTGTACAACCTGCTCGAACCGGCCGTCGATGGTTCCAGCATCTACGCCGCG 
TCCGCCGAAGGGCGGGTGATGGCGATCCAGCGCGAGACCGGCGACGTGCTCTGGAAGAAGGACCTGGAACGT 
CCGGTTTCCGGCGGTGTCGGCGTTGGCTACGGCCTGGTGCTGGTGGGTACCCTGCGCGGTGACGTGATCGCC 
CTCGACGAAGCCACCGGCAAGAAGAAGTGGACCAAGCGAGTCAACAGCGAAGTGCTGTCGGCGCCGGCCACC 
AACGGCGACGTGGTGGTGGTGCAGACCCAGGACGACAAGCTGATCGGCCTCGATGCGGCCAGCGGCGACCAG 
CGCTGGATCTACGAAAGCACCGTGCCGGTGCTGACCCTGCGCGGCACCGGCGCGCCGCTGATCGCCGGCAAC 
ATGGCCCTGGCTGGCCTGGCCAGCGGCAAGGTGGTGGCGGTCGACGTACAGCGCGGCCTGCCGATCTGGGAG 
CAGCGGGTAGCGATTCCCCAGGGGCGTTCCGAACTGGATCGCGTGGTGGACATCGACGGCGGCCTCCTGCTG 
TCCGGCGACACCCTCTACGTGGTCAGCTACCAGGGCCGTGCCGCGGCGCTGGACGTGAACAGCGGCCGCCTG 
CTCTGGCAGCGCGAAGCGTCGAGCTACGTCGGCGTCGCCGAAGGCTTCGGCAATATCTACGTCAGCCAGGCC 
AGCGGTTCGGTGGAAGGCCTGGATTCGCGCGGCGCTTCTTCGCTGTGGAACAACGACGCCCTGGCGCGTCGC 
CAACTGTCGGCTCCGGCGGTGTTCTCCAGCAACGTGGTGGTCGGCGACCTGGAAGGCTACGTGCACCTGCTG 
AGCCAGGTGGACGGTCGCTTCGTTGGTCGCGAGCGGGTCGACAGCGATGGCGTGCGGGTTCGTCCGCTGGTG 
GTCGGGAGCTGGATGTACGTGTTCGGCAACGGTGGCAAGCTCGTCGCCTACACCATCCGCTAG