ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1683

TrivialName: PA14_40620

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_40620

PAO1 Ortholog Locus: PA1848

Sequence Length: 1170

Protein Length: 389

Start: 3625200

Stop: 3626369

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05237.1|AE004611_2 (AE004611) probable MFS transporter [Pseudomonas aeruginosa PAO1] Identities = 384/389 (98%), Positives = 385/389 (98%)

Sequence:

ATGCTGCTACGCAACCCGACCCTGCTCCTGCTGTTCTGCGGCCAGGCCCTGTACTGGTCCTGTTCGCTGATC
GGCATAACACTGACCTCGCTGGTCGGCGTCCAGCTGGCGCCGTTGAACAGCCTGGCCACCCTGCCCCTGGCC
CTGCTGGTGCTGGGCAACCTGCTGGCGGTGCAGCCGTTGTCGCACTTCATGCAGCGCCACGGCCGACGTCCC
GGGCTGATGCTCGGCGCCGGCGGCGGCGTGCTCGGCGGTCTGGTCTGCGCCGCCGGTGTCTGGACTGGCGAT
TTCCTCTGGTTCTGTCTCGGCGCGCTGGGCATCGGGGTCTACCAGGCCTCGGCCATGTACTACCGGTTCGCC
GCGCTGGAGGCGGTGGATGCCGGGCGGAAAGGCCGCGCCAGCGCCTACGTGCTCGCCGGCGGGGTACTCGCC
GCGCTGCTGGCGCCGAGCCTGGCGCTGTGGTCGCGCAACGCGCTGGCCCAGCCCTTCGTCGGCGCCTATCTG
CTGATCGCCGTGCTGGCCCTCGCCGGCCTGCTGCTGATGGCCCTGCTCCGCGAAGGCCAGGCGCCGCGCCCG
GCACGACTCGCCTGGCGCGACATAGGCGGCCTGTTGCGGCGGCCGGTGGTCCGCGCGGCCATCGCCTGCACC
GCGGCGGGACACGGGTTGATGATCCTGATCATGAACGCCACGCCGCTGGCCATGAGCTTCTGCGGCCTGCCG
CTGGAACAGTCGAGTCGGGTCATCCAGTGGCACGTGCTGGGAATGTTCCTTCCGGCGTTCTTCGCCGGAGCG
CTGGTCGACCGCATCGGCAACCGTCGCGTCGCCCTGCTCGGCGCGTTCCTGCTCGCCGCAAGTGCCGGCATC
GCCCTGGGTGGACAGTCGGTCATGCATTTTCTGCTCAGTTCGCTGGCCCTGGGCAGCGGCTGGAACCTGATG
CTCATCGCCGGCACCACCCTGCTCGGCGAGGGCCACGCCGAAAGCGAGCGCGGCGCCGCGCAAGGATTGATG
GAGCAAGGCAACAGCCTGGTGGCGGCGCTGATGTCGTTCGGCTCCGGCGCCCTGATCACCAGCCTTGGCTGG
AACGCGGTTAACCTGCTGGTCTGGCCGGCGCTGCTGGTGGCGCTGGCACTGCTCTGGCCGGTACGGCGAACG
CGGACGCTGTCGCGCTGA

Translation:

MLLRNPTLLLLFCGQALYWSCSLIGITLTSLVGVQLAPLNSLATLPLALLVLGNLLAVQPLSHFMQRHGRRP
GLMLGAGGGVLGGLVCAAGVWTGDFLWFCLGALGIGVYQASAMYYRFAALEAVDAGRKGRASAYVLAGGVLA
ALLAPSLALWSRNALAQPFVGAYLLIAVLALAGLLLMALLREGQAPRPARLAWRDIGGLLRRPVVRAAIACT
AAGHGLMILIMNATPLAMSFCGLPLEQSSRVIQWHVLGMFLPAFFAGALVDRIGNRRVALLGAFLLAASAGI
ALGGQSVMHFLLSSLALGSGWNLMLIAGTTLLGEGHAESERGAAQGLMEQGNSLVAALMSFGSGALITSLGW
NAVNLLVWPALLVALALLWPVRRTRTLSR*

AnnotationID:1692 GeneID:1683

AnnotatorUID: diggins

Modification Date/Time: 2005-03-02 05:05:30

Gene Name:

Confidence Code: 3

GeneProduct: putative MFS transporter

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG2814

Secondary Functional Category(ies): membrane protein

EC Number:

Status: ACTIVE

Pathway:

Homology:

>emb|CAE33017.1| (BX640444) putative membrane protein [Bordetella bronchiseptica]
          Length = 396

 Score =  240 bits (612), Expect = 1e-62
 Identities = 150/378 (39%), Positives = 203/378 (53%), Gaps = 2/378 (0%)

>dbj|BAC62527.1| (AP005088) putative drug transport transmembrane protein [Vibrio
           parahaemolyticus]
          Length = 392

 Score =  213 bits (542), Expect = 2e-54
 Identities = 132/378 (34%), Positives = 199/378 (52%), Gaps = 8/378 (2%)

Structural Features:

COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
CD-Length = 394 residues,  94.9% aligned
Score = 49.8 bits (119), Expect = 5e-07

Genomic Context:

Comment:

ReferenceID:3369

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20516

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37073

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1683_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1683

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2966 PA1848_tr translation of PA1848 389 98.71 98.97 0 1935.0

92590 gb|AAG05237.1|AE004611_2 (AE004611) probable MFS transporter [Pseudomonas aeruginosa PAO1] 389 98.71 98.97 0 1935.0

GC ORFID: `44685`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1848`	Glimmer Score:
Start: `1328710`	Stop: `1327541`
Length: `1170`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1848 translation of PA1848`	Homolog Bit Score `749.0`
Other Homologs: `t_PA1848 (ORF: GLIMMER)`
GC ORF Sequence
ATGCTGCTACGCAACCCGACCCTGCTCCTGCTGTTCTGCGGCCAGGCCCTGTACTGGTCCTGTTCGCTGATC GGCATAACACTGACCTCGCTGGTCGGCGTCCAGCTGGCGCCGTTGAACAGCCTGGCCACCCTGCCCCTGGCC CTGCTGGTGCTGGGCAACCTGCTGGCGGTGCAGCCGTTGTCGCACTTCATGCAGCGCCACGGCCGACGTCCC GGGCTGATGCTCGGCGCCGGCGGCGGCGTGCTCGGCGGTCTGGTCTGCGCCGCCGGTGTCTGGACTGGCGAT TTCCTCTGGTTCTGTCTCGGCGCGCTGGGCATCGGGGTCTACCAGGCCTCGGCCATGTACTACCGGTTCGCC GCGCTGGAGGCGGTGGATGCCGGGCGGAAAGGCCGCGCCAGCGCCTACGTGCTCGCCGGCGGGGTACTCGCC GCGCTGCTGGCGCCGAGCCTGGCGCTGTGGTCGCGCAACGCGCTGGCCCAGCCCTTCGTCGGCGCCTATCTG CTGATCGCCGTGCTGGCCCTCGCCGGCCTGCTGCTGATGGCCCTGCTCCGCGAAGGCCAGGCGCCGCGCCCG GCACGACTCGCCTGGCGCGACATAGGCGGCCTGTTGCGGCGGCCGGTGGTCCGCGCGGCCATCGCCTGCACC GCGGCGGGACACGGGTTGATGATCCTGATCATGAACGCCACGCCGCTGGCCATGAGCTTCTGCGGCCTGCCG CTGGAACAGTCGAGTCGGGTCATCCAGTGGCACGTGCTGGGAATGTTCCTTCCGGCGTTCTTCGCCGGAGCG CTGGTCGACCGCATCGGCAACCGTCGCGTCGCCCTGCTCGGCGCGTTCCTGCTCGCCGCAAGTGCCGGCATC GCCCTGGGTGGACAGTCGGTCATGCATTTTCTGCTCAGTTCGCTGGCCCTGGGCAGCGGCTGGAACCTGATG CTCATCGCCGGCACCACCCTGCTCGGCGAGGGCCACGCCGAAAGCGAGCGCGGCGCCGCGCAAGGATTGATG GAGCAAGGCAACAGCCTGGTGGCGGCGCTGATGTCGTTCGGCTCCGGCGCCCTGATCACCAGCCTTGGCTGG AACGCGGTTAACCTGCTGGTCTGGCCGGCGCTGCTGGTGGCGCTGGCACTGCTCTGGCCGGTACGGCGAACG CGGACGCTGTCGCGCTGA