ViewGene
Locus Name:
GeneID:
Location:

GeneID:1638
TrivialName: PA14_25790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25790
PAO1 Ortholog Locus:PA2958
Sequence Length:1134
Protein Length:377
Start: 2251820
Stop: 2250687
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06346.1|AE004722_2 (AE004722) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 373/377 (98%), Positives = 375/377 (99%)
Sequence:
ATGAATTGTTACCAGGACGAATTCGACCAGACCAACGGTCTGCGCTACCTCAACCACGCAGCGGTCGCACCC
TGGCCTAGACGCGCCGCCGACGCGGTGAGCGCCTTCGCCCGGGAGAACGTCGCCCACGGCGCCAGCGACTAT
CCGGAATGGCTGAAGATAGAACATCGCCTGCGCGAACGCCTTGCCCGACTGCTCAATGCGCGCGCCGGCAGC
GACCTCGCACTGGTCAAGAACACCTCCGAGGCGCTTTCCTTCGTAGCCTTCGGCCTGGATTGGCGAGAGGGC
GACCAGGTCGTCATCGGCAACGAGGAGTTCCCCTCCAATAGAGTGGTCTGGGAAGCCTTGCGCCCGCGCGGC
GTCGAAGTGGTCGAGGTCGGTCTCGCCGGCGACGACCCCGAGGGCGCCCTGCTCGCCGCCTGCGGCCCACGC
ACCCGCCTGCTGTCGATCAGCGCGGTGCAGTACGCCAGCGGCCTGCGCCTTGACCTGGAGCGCATCGGCACG
GGATGTCGCCGCCGCGGCGTGCTGTTCTGCATCGACGCGATCCAGCAGCTCGGCGCCCTGCCCTTCGACGTA
CAGGCCTACGATTGTGCCTTCGCCATGGCCGATGGGCACAAGTGGATGCTCGGCCCCGAAGGGCTGGGCGTC
TTCTATTGCCATCCCGAGCAGCGCGAGCGCCTGGCGCTGCACGAATATGGCTGGCACATGCTGGAACATGCC
CTCGATTACGAGCGTCGCGACTGGCGGCCGGCGCGCAGCGCCCGGCGCTTCGAATGCGGCAGCCCGAACATG
CTCGGCGCGATGGCCCTGGAGGCCAGCCTGGGGCTGTTGGAGGAGGTCGGCATGGAGCGGGTCGGCAGAGAC
ATCGCCGAGCGCGTCCAGTGGCTACAGGACGGTCTGTCGGGAATTCCCGGGGTACGCCTGCACAGCCCGCGG
AACCCGAGCCGACGCGCGGGCATCCTGACCTTCAGCCTGGACGGCCAGGACAGCCGGACACTCTTCGAAACG
CTTCGCCAGGAGCGGGTCATTTGCGCCCAGCGTGGCGGAGGTATCCGTTTTTCCCCGCACTTCTACACGAGT
TCGACGGTGATCGACGACACCCTGGCGATCTTGCGCCAGGTCGCAGGCACCTAG
Translation:
MNCYQDEFDQTNGLRYLNHAAVAPWPRRAADAVSAFARENVAHGASDYPEWLKIEHRLRERLARLLNARAGS
DLALVKNTSEALSFVAFGLDWREGDQVVIGNEEFPSNRVVWEALRPRGVEVVEVGLAGDDPEGALLAACGPR
TRLLSISAVQYASGLRLDLERIGTGCRRRGVLFCIDAIQQLGALPFDVQAYDCAFAMADGHKWMLGPEGLGV
FYCHPEQRERLALHEYGWHMLEHALDYERRDWRPARSARRFECGSPNMLGAMALEASLGLLEEVGMERVGRD
IAERVQWLQDGLSGIPGVRLHSPRNPSRRAGILTFSLDGQDSRTLFETLRQERVICAQRGGGIRFSPHFYTS
STVIDDTLAILRQVAGT*
AnnotationID:1647GeneID:1638
AnnotatorUID: diggins
Modification Date/Time: 2005-04-10 11:11:49
Gene Name:
Confidence Code:3
GeneProduct:putative selenocysteine lyase
Cell Localization:()
Synonyms:PA2958
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0520
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0520, CsdB, Selenocysteine lyase 
[Amino acid transport and metabolism]






   
Genomic Context:






   
Comment:


















    ReferenceID:3279




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20426




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36055




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1638_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1638
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2897
                           PA2958_tr
                           translation of PA2958
                           377
                           98.93
                           99.46
                           0
                           1965.0
     

     
     
90430
                           gb|AAG06346.1|AE004722_2
                           (AE004722) hypothetical protein PA2958 [Pseudomonas aeruginosa PAO1]
                           377
                           98.93
                           99.46
                           0
                           1965.0
     

     






      

          
GC ORFID: 44640How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2958Glimmer Score: 

          
Start: 2702105Stop: 2703238

          
Length: 1134


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2958 translation of PA2958Homolog Bit Score 761.0

          
Other Homologs:  t_PA2958 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATTGTTACCAGGACGAATTCGACCAGACCAACGGTCTGCGCTACCTCAACCACGCAGCGGTCGCACCC 
TGGCCTAGACGCGCCGCCGACGCGGTGAGCGCCTTCGCCCGGGAGAACGTCGCCCACGGCGCCAGCGACTAT 
CCGGAATGGCTGAAGATAGAACATCGCCTGCGCGAACGCCTTGCCCGACTGCTCAATGCGCGCGCCGGCAGC 
GACCTCGCACTGGTCAAGAACACCTCCGAGGCGCTTTCCTTCGTAGCCTTCGGCCTGGATTGGCGAGAGGGC 
GACCAGGTCGTCATCGGCAACGAGGAGTTCCCCTCCAATAGAGTGGTCTGGGAAGCCTTGCGCCCGCGCGGC 
GTCGAAGTGGTCGAGGTCGGTCTCGCCGGCGACGACCCCGAGGGCGCCCTGCTCGCCGCCTGCGGCCCACGC 
ACCCGCCTGCTGTCGATCAGCGCGGTGCAGTACGCCAGCGGCCTGCGCCTTGACCTGGAGCGCATCGGCACG 
GGATGTCGCCGCCGCGGCGTGCTGTTCTGCATCGACGCGATCCAGCAGCTCGGCGCCCTGCCCTTCGACGTA 
CAGGCCTACGATTGTGCCTTCGCCATGGCCGATGGGCACAAGTGGATGCTCGGCCCCGAAGGGCTGGGCGTC 
TTCTATTGCCATCCCGAGCAGCGCGAGCGCCTGGCGCTGCACGAATATGGCTGGCACATGCTGGAACATGCC 
CTCGATTACGAGCGTCGCGACTGGCGGCCGGCGCGCAGCGCCCGGCGCTTCGAATGCGGCAGCCCGAACATG 
CTCGGCGCGATGGCCCTGGAGGCCAGCCTGGGGCTGTTGGAGGAGGTCGGCATGGAGCGGGTCGGCAGAGAC 
ATCGCCGAGCGCGTCCAGTGGCTACAGGACGGTCTGTCGGGAATTCCCGGGGTACGCCTGCACAGCCCGCGG 
AACCCGAGCCGACGCGCGGGCATCCTGACCTTCAGCCTGGACGGCCAGGACAGCCGGACACTCTTCGAAACG 
CTTCGCCAGGAGCGGGTCATTTGCGCCCAGCGTGGCGGAGGTATCCGTTTTTCCCCGCACTTCTACACGAGT 
TCGACGGTGATCGACGACACCCTGGCGATCTTGCGCCAGGTCGCAGGCACCTAG