ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1594

TrivialName: PA14_51100

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_51100

PAO1 Ortholog Locus: PA1022

Sequence Length: 1146

Protein Length: 381

Start: 4542168

Stop: 4541023

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04411.1|AE004534_9 (AE004534) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1] Identities = 377/381 (98%), Positives = 379/381 (99%)

Sequence:

ATGACCGACTACGACAATCTCGACGACAACGCCTTTCGCCTGATGGTCCGTGAGTGGATCGCCGCCAACTAT
CCGCAGCGCATCCGCAATCCGCCCCGTCGCCTGGGGCGCGAGGAAACCCGCGAGTGGTACCTGCTGTTGTCG
CGCCAGGGCTGGCTGTGTCCCGGCTGGCCCAGGGAGTACGGCGGCATGGGGCTGAGCGCCGGCAAGCAACTG
ATCATGATGGAGGAAATGGAGGAGTACGGCTGCGCGCGCCTGCCCGACAGCGGCGTGACCATGCTCGGCCCA
TTGTTGATCCGCTATGGCGACGAGGCGCAACGGGCGCGCTTTCTGCCGCGCATTCTCAGCGGCGAAGACATC
TGGTGCCAGGGCTACAGCGAGCCCAACGCCGGCTCCGACCTGGCCAGCCTGCGCACCGAGGCGCGCCTGGAA
AACGGCGAGTGGGTGATCAACGGACAGAAGACCTGGACCACCATGGGCTCTGAGGCCAATTGGATCTTCCTG
CTGGTCCGCACCGAGCGCAGCGCCAAGGCGCAGCACGGCATCAGCTTCCTGCTGGTGCCGATGGACAGCCCG
GGCATCGAGGTGCGGCCGATCCTCAACCTGGAGCTGCACGGCGAGTTCTGCGAAGTGTTTTTCAACGACGTG
CGGGTGCCCTACGACAGCCTGGTCGGCGAAATCAACCAGGGCTGGAGCATGGCCAAGGCGCTGCTCGGTTTC
GAGCGGATCTTCCTCGGTTCGCCCAAGCAGTCCACCTTCGCCCTCCAGCGCCTGGAGCGCCTGGCCCGGCAC
CTGGGACTGTGGCACGACCCTCTGTTCGCGCGCCGTTTCGCCGCGCTGAGCATGGACCTGGACAGCCACAAG
GCGCTCTACGAGCGTTTCGCCGAACGCCTGCGGCGTGGGGAGAGGCTCGGCCCGGAGGTATCCATGCTGAAG
ATCTTCCAGTCCGAACTGTTCCAGCGCATCAGCGAGCTGGGCCTGGAGGTCGCCGGGGAGGACTCGGCCCTG
CTACAGCCCTTCGCCGAAGACCCCGAGCTGCATCCGGCGGGGATCTTCATCCAGTCGCGGCCGACCACCATC
TACGGCGGCAGCAACGAAATCCAGCGCAACATCCTGGCCAAGAGCGTCCTCGGCCTGCCGGGCTGA

Translation:

MTDYDNLDDNAFRLMVREWIAANYPQRIRNPPRRLGREETREWYLLLSRQGWLCPGWPREYGGMGLSAGKQL
IMMEEMEEYGCARLPDSGVTMLGPLLIRYGDEAQRARFLPRILSGEDIWCQGYSEPNAGSDLASLRTEARLE
NGEWVINGQKTWTTMGSEANWIFLLVRTERSAKAQHGISFLLVPMDSPGIEVRPILNLELHGEFCEVFFNDV
RVPYDSLVGEINQGWSMAKALLGFERIFLGSPKQSTFALQRLERLARHLGLWHDPLFARRFAALSMDLDSHK
ALYERFAERLRRGERLGPEVSMLKIFQSELFQRISELGLEVAGEDSALLQPFAEDPELHPAGIFIQSRPTTI
YGGSNEIQRNILAKSVLGLPG*

AnnotationID:1603 GeneID:1594

AnnotatorUID: danlee

Modification Date/Time: 2004-05-18 17:05:20

Gene Name:

Confidence Code: 3

GeneProduct: probable acyl-CoA dehydrogenase

Cell Localization: ()

Synonyms: PA1022

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (20) Putative enzymes

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: cd01152, COG1960, cd00567

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenase (ACAD). Score: 358, 7e-100
COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]. Score: 231, 1e-61
cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD). Score: 209, 4e-55

Genomic Context:

Comment:

ReferenceID:3191

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17009

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

NCBI - Conserved Domain Search.

Reference Type: Blast (text/plain)

Data: PA1022_CDS.cgi

URL:

ReferenceID:20338

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1594

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2820 PA1022_tr translation of PA1022 381 98.95 99.47 0 1985.0

88084 gb|AAG04411.1|AE004534_9 (AE004534) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1] 381 98.95 99.47 0 1985.0

88085 emb|CAD15752.1| (AL646068) PUTATIVE ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum] 408 42.15 58.82 37 755.0

88086 gb|AAK23291.1| (AE005806) acyl-CoA dehydrogenase family protein [Caulobacter crescentus CB15] 412 41.26 57.76 39 756.0

88087 emb|CAE29155.1| (BX572605) pimeloyl-CoA dehydrogenase (large subunit) [Rhodopseudomonas palustris CGA009] 411 40.14 57.66 45 733.0

GC ORFID: `44596`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1022`	Glimmer Score:
Start: `411740`	Stop: `412885`
Length: `1146`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1022 translation of PA1022`	Homolog Bit Score `769.0`
Other Homologs: `t_PA1022 (ORF: GLIMMER)`
GC ORF Sequence
ATGACCGACTACGACAATCTCGACGACAACGCCTTTCGCCTGATGGTCCGTGAGTGGATCGCCGCCAACTAT CCGCAGCGCATCCGCAATCCGCCCCGTCGCCTGGGGCGCGAGGAAACCCGCGAGTGGTACCTGCTGTTGTCG CGCCAGGGCTGGCTGTGTCCCGGCTGGCCCAGGGAGTACGGCGGCATGGGGCTGAGCGCCGGCAAGCAACTG ATCATGATGGAGGAAATGGAGGAGTACGGCTGCGCGCGCCTGCCCGACAGCGGCGTGACCATGCTCGGCCCA TTGTTGATCCGCTATGGCGACGAGGCGCAACGGGCGCGCTTTCTGCCGCGCATTCTCAGCGGCGAAGACATC TGGTGCCAGGGCTACAGCGAGCCCAACGCCGGCTCCGACCTGGCCAGCCTGCGCACCGAGGCGCGCCTGGAA AACGGCGAGTGGGTGATCAACGGACAGAAGACCTGGACCACCATGGGCTCTGAGGCCAATTGGATCTTCCTG CTGGTCCGCACCGAGCGCAGCGCCAAGGCGCAGCACGGCATCAGCTTCCTGCTGGTGCCGATGGACAGCCCG GGCATCGAGGTGCGGCCGATCCTCAACCTGGAGCTGCACGGCGAGTTCTGCGAAGTGTTTTTCAACGACGTG CGGGTGCCCTACGACAGCCTGGTCGGCGAAATCAACCAGGGCTGGAGCATGGCCAAGGCGCTGCTCGGTTTC GAGCGGATCTTCCTCGGTTCGCCCAAGCAGTCCACCTTCGCCCTCCAGCGCCTGGAGCGCCTGGCCCGGCAC CTGGGACTGTGGCACGACCCTCTGTTCGCGCGCCGTTTCGCCGCGCTGAGCATGGACCTGGACAGCCACAAG GCGCTCTACGAGCGTTTCGCCGAACGCCTGCGGCGTGGGGAGAGGCTCGGCCCGGAGGTATCCATGCTGAAG ATCTTCCAGTCCGAACTGTTCCAGCGCATCAGCGAGCTGGGCCTGGAGGTCGCCGGGGAGGACTCGGCCCTG CTACAGCCCTTCGCCGAAGACCCCGAGCTGCATCCGGCGGGGATCTTCATCCAGTCGCGGCCGACCACCATC TACGGCGGCAGCAACGAAATCCAGCGCAACATCCTGGCCAAGAGCGTCCTCGGCCTGCCGGGCTGA