ViewGene

Locus Name:
GeneID:
Location:

GeneID:1594
TrivialName: PA14_51100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51100
PAO1 Ortholog Locus:PA1022
Sequence Length:1146
Protein Length:381
Start: 4542168
Stop: 4541023
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04411.1|AE004534_9 (AE004534) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 377/381 (98%), Positives = 379/381 (99%)
Sequence:
ATGACCGACTACGACAATCTCGACGACAACGCCTTTCGCCTGATGGTCCGTGAGTGGATCGCCGCCAACTAT
CCGCAGCGCATCCGCAATCCGCCCCGTCGCCTGGGGCGCGAGGAAACCCGCGAGTGGTACCTGCTGTTGTCG
CGCCAGGGCTGGCTGTGTCCCGGCTGGCCCAGGGAGTACGGCGGCATGGGGCTGAGCGCCGGCAAGCAACTG
ATCATGATGGAGGAAATGGAGGAGTACGGCTGCGCGCGCCTGCCCGACAGCGGCGTGACCATGCTCGGCCCA
TTGTTGATCCGCTATGGCGACGAGGCGCAACGGGCGCGCTTTCTGCCGCGCATTCTCAGCGGCGAAGACATC
TGGTGCCAGGGCTACAGCGAGCCCAACGCCGGCTCCGACCTGGCCAGCCTGCGCACCGAGGCGCGCCTGGAA
AACGGCGAGTGGGTGATCAACGGACAGAAGACCTGGACCACCATGGGCTCTGAGGCCAATTGGATCTTCCTG
CTGGTCCGCACCGAGCGCAGCGCCAAGGCGCAGCACGGCATCAGCTTCCTGCTGGTGCCGATGGACAGCCCG
GGCATCGAGGTGCGGCCGATCCTCAACCTGGAGCTGCACGGCGAGTTCTGCGAAGTGTTTTTCAACGACGTG
CGGGTGCCCTACGACAGCCTGGTCGGCGAAATCAACCAGGGCTGGAGCATGGCCAAGGCGCTGCTCGGTTTC
GAGCGGATCTTCCTCGGTTCGCCCAAGCAGTCCACCTTCGCCCTCCAGCGCCTGGAGCGCCTGGCCCGGCAC
CTGGGACTGTGGCACGACCCTCTGTTCGCGCGCCGTTTCGCCGCGCTGAGCATGGACCTGGACAGCCACAAG
GCGCTCTACGAGCGTTTCGCCGAACGCCTGCGGCGTGGGGAGAGGCTCGGCCCGGAGGTATCCATGCTGAAG
ATCTTCCAGTCCGAACTGTTCCAGCGCATCAGCGAGCTGGGCCTGGAGGTCGCCGGGGAGGACTCGGCCCTG
CTACAGCCCTTCGCCGAAGACCCCGAGCTGCATCCGGCGGGGATCTTCATCCAGTCGCGGCCGACCACCATC
TACGGCGGCAGCAACGAAATCCAGCGCAACATCCTGGCCAAGAGCGTCCTCGGCCTGCCGGGCTGA
Translation:
MTDYDNLDDNAFRLMVREWIAANYPQRIRNPPRRLGREETREWYLLLSRQGWLCPGWPREYGGMGLSAGKQL
IMMEEMEEYGCARLPDSGVTMLGPLLIRYGDEAQRARFLPRILSGEDIWCQGYSEPNAGSDLASLRTEARLE
NGEWVINGQKTWTTMGSEANWIFLLVRTERSAKAQHGISFLLVPMDSPGIEVRPILNLELHGEFCEVFFNDV
RVPYDSLVGEINQGWSMAKALLGFERIFLGSPKQSTFALQRLERLARHLGLWHDPLFARRFAALSMDLDSHK
ALYERFAERLRRGERLGPEVSMLKIFQSELFQRISELGLEVAGEDSALLQPFAEDPELHPAGIFIQSRPTTI
YGGSNEIQRNILAKSVLGLPG*
AnnotationID:1603GeneID:1594
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 17:05:20
Gene Name:
Confidence Code:3
GeneProduct:probable acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA1022
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01152, COG1960, cd00567
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenase (ACAD). Score: 358, 7e-100
COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]. Score: 231, 1e-61
cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD). Score: 209, 4e-55
Genomic Context:
Comment:
ReferenceID:3191
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17009
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI - Conserved Domain Search.
Reference Type:Blast (text/plain)
Data:PA1022_CDS.cgi
URL:
ReferenceID:20338
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1594

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2820 PA1022_tr translation of PA1022 381 98.95 99.47 0 1985.0
88084 gb|AAG04411.1|AE004534_9 (AE004534) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1] 381 98.95 99.47 0 1985.0
88085 emb|CAD15752.1| (AL646068) PUTATIVE ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum] 408 42.15 58.82 37 755.0
88086 gb|AAK23291.1| (AE005806) acyl-CoA dehydrogenase family protein [Caulobacter crescentus CB15] 412 41.26 57.76 39 756.0
88087 emb|CAE29155.1| (BX572605) pimeloyl-CoA dehydrogenase (large subunit) [Rhodopseudomonas palustris CGA009] 411 40.14 57.66 45 733.0
GC ORFID: 44596How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1022Glimmer Score:
Start: 411740Stop: 412885
Length: 1146
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1022 translation of PA1022Homolog Bit Score 769.0
Other Homologs: t_PA1022 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGACTACGACAATCTCGACGACAACGCCTTTCGCCTGATGGTCCGTGAGTGGATCGCCGCCAACTAT
CCGCAGCGCATCCGCAATCCGCCCCGTCGCCTGGGGCGCGAGGAAACCCGCGAGTGGTACCTGCTGTTGTCG
CGCCAGGGCTGGCTGTGTCCCGGCTGGCCCAGGGAGTACGGCGGCATGGGGCTGAGCGCCGGCAAGCAACTG
ATCATGATGGAGGAAATGGAGGAGTACGGCTGCGCGCGCCTGCCCGACAGCGGCGTGACCATGCTCGGCCCA
TTGTTGATCCGCTATGGCGACGAGGCGCAACGGGCGCGCTTTCTGCCGCGCATTCTCAGCGGCGAAGACATC
TGGTGCCAGGGCTACAGCGAGCCCAACGCCGGCTCCGACCTGGCCAGCCTGCGCACCGAGGCGCGCCTGGAA
AACGGCGAGTGGGTGATCAACGGACAGAAGACCTGGACCACCATGGGCTCTGAGGCCAATTGGATCTTCCTG
CTGGTCCGCACCGAGCGCAGCGCCAAGGCGCAGCACGGCATCAGCTTCCTGCTGGTGCCGATGGACAGCCCG
GGCATCGAGGTGCGGCCGATCCTCAACCTGGAGCTGCACGGCGAGTTCTGCGAAGTGTTTTTCAACGACGTG
CGGGTGCCCTACGACAGCCTGGTCGGCGAAATCAACCAGGGCTGGAGCATGGCCAAGGCGCTGCTCGGTTTC
GAGCGGATCTTCCTCGGTTCGCCCAAGCAGTCCACCTTCGCCCTCCAGCGCCTGGAGCGCCTGGCCCGGCAC
CTGGGACTGTGGCACGACCCTCTGTTCGCGCGCCGTTTCGCCGCGCTGAGCATGGACCTGGACAGCCACAAG
GCGCTCTACGAGCGTTTCGCCGAACGCCTGCGGCGTGGGGAGAGGCTCGGCCCGGAGGTATCCATGCTGAAG
ATCTTCCAGTCCGAACTGTTCCAGCGCATCAGCGAGCTGGGCCTGGAGGTCGCCGGGGAGGACTCGGCCCTG
CTACAGCCCTTCGCCGAAGACCCCGAGCTGCATCCGGCGGGGATCTTCATCCAGTCGCGGCCGACCACCATC
TACGGCGGCAGCAACGAAATCCAGCGCAACATCCTGGCCAAGAGCGTCCTCGGCCTGCCGGGCTGA