ViewGene
Locus Name:
GeneID:
Location:

GeneID:1576
TrivialName: PA14_26490
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26490
PAO1 Ortholog Locus:
Sequence Length:1482
Protein Length:493
Start: 2308150
Stop: 2309632
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Inactivated and replaced by GeneID7402 (PA14_26485). Homology: gb|AAG06294.1|AE004716_12 (AE004716) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 389/400 (97%), Positives = 390/400 (97%)
Sequence:
CTGCCGCCGAAACCAGTCGCGAGTGCCAACATCGGGCGGGGTGTACCGATGCCGTGGTCTGTCCCTGGGGGA
CAGCGGTGCGGTCGCCGCGACGCCGATTCGAGTAGCGTTTTTGAACGACGACCAGACCCCGGCGCCCCTGCC
CGTACCACGTCCGTCACCCTGTCCCGGCCTGCTGCGTATCGTCCAGGCGCTGGACGGCGGCATCTGCCGCAT
CAAGCTCGATGCCGGTCGCCTggaCgccgcccaGGCacgcgccgtgGCGGCCgcggcgcgggatgcgccagc
gcagtgatcgaggcgacCAACCgttccaaCCTGCAATTGCGTGGCGTCcgcCGCGGCGAGGAAGAGCGGCTC
GTCCGCCGcCTGCTGGACGCCGGCCTCGGTCCCCGGCATGGGGCCCTGGCCGGCGCCGACGACGTGCGCAAC
CTGATGCTCAGCCCGGCCGCCGGGCTCGATCCGCACCTGTCGCTGGACGTGCGCCCGCTGGCCGCTCGGCTG
TTGCTGCGGCTCCAGGCGGACAGCCGCTACCACGCGCTGTCGGCCAAGTTCGCCATCCAGCTGGACGGCGGC
GAAGACCTGGCGATGCTCGAACATCCCCATGACATCTGGCTCTCGCCGATGCCCGCGGCGCCGACCGCGACG
CTGGTCTTCGGACTCGCCGGCTGCCCGGCCCGCGACCGCCCCCTGGCGGCGTTGCCGGCGGAGCGGGGCGAG
TCCCTGGTGCTGGCGCTGCTCGACCTGTTCCTCGAACGCGCCCAGCCGCAACAGACGCGGATGCGCCACCTG
TTGCAGGAGCTGGCCGGAGAATCCTTGCTGGAGGCCTTGCAGGCGCGCCTGGATTTCCCTCTGCGGCGTGAC
GAGCGGGTGGCGGCCTGGCGGCGTCCGCCGGGGCGTGCGTGGAGTCATCTCGGCGTCCAGCCGCAACGCCAG
CCGGGCCTGGCGATGGTCGGCGCGGCGGCGCCGCTCGGCCGGCTCGACAGCGCTTGCCTGGAAGGCCTGGCC
GAGCTGGTCGAGCGCCATGGCGACGGCAGCCTGCGCCTGACCCCCTGGCAAGGCGTGCTCCTGCCGAACCTG
GCGCAGGCCGAGGCCCACCAGGCGCTGCTCGGCCTGCGCGGACTCGGCCTGCTGACCGAGCCCGACGCGCCG
TTGGCGCGGCTGATCGCCTGCAGCGGTTCCAGCGCCTGCGCCAGGGGCTTGGCCGACACCAAGGGCGACGCC
TTGCGCCTGGCCGAACGCCTCGGCCCGCGCAGCGACCTGCCGCAACTGCACCTGTGCGGCTGCGAACGGTCC
TGCGCCGCTGCCCACCGCGCGCCGCTCACCCTGCTGGCGCGCAGCGGCGGGTTCTACGACCTGTACCGGCGC
GACCCATGCCACCCCGGATTCGGCCAGTTGCTGGCCAGCCGCCTGACTTTCGCCACGGCCGCCGATTACCTG
GCGGCCCTGCCTTCCCAGCCCACTTCCGGAAAACCCGCATGA
Translation:
MPPKPVASANIGRGVPMPWSVPGGQRCGRRDADSSSVFERRPDPGAPARTTSVTLSRPAAYRPGAGRRHLPH
QARCRSPGRRPGTRRGGRGAGCASAVIEATNRSNLQLRGVRRGEEERLVRRLLDAGLGPRHGALAGADDVRN
LMLSPAAGLDPHLSLDVRPLAARLLLRLQADSRYHALSAKFAIQLDGGEDLAMLEHPHDIWLSPMPAAPTAT
LVFGLAGCPARDRPLAALPAERGESLVLALLDLFLERAQPQQTRMRHLLQELAGESLLEALQARLDFPLRRD
ERVAAWRRPPGRAWSHLGVQPQRQPGLAMVGAAAPLGRLDSACLEGLAELVERHGDGSLRLTPWQGVLLPNL
AQAEAHQALLGLRGLGLLTEPDAPLARLIACSGSSACARGLADTKGDALRLAERLGPRSDLPQLHLCGCERS
CAAAHRAPLTLLARSGGFYDLYRRDPCHPGFGQLLASRLTFATAADYLAALPSQPTSGKPA*
AnnotationID:1585GeneID:1576
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 11:11:58
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58306.1| (AE016873) cobalamin biosynthesis protein CobG, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 476

 Score =  397 bits (1021), Expect = e-110
 Identities = 208/388 (53%), Positives = 260/388 (67%), Gaps = 7/388 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:
Inactivated and replaced by GeneID7402 (PA14_26485).


















    ReferenceID:14389




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20302




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36151




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1576_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1576
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
87672
                           gb|AAG06294.1|AE004716_12
                           (AE004716) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           522
                           79.11
                           80.26
                           65
                           2001.0
     

     
     
2800
                           PA2906_tr
                           translation of PA2906
                           524
                           78.43
                           79.58
                           69
                           1998.0
     

     
     
87673
                           gb|AAO58306.1|
                           (AE016873) cobalamin biosynthesis protein CobG, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           515
                           46.21
                           58.64
                           61
                           1048.0
     

     
     
87674
                           gb|AAN70398.1|AE016681_7
                           (AE016792) cobalamin biosynthesis protein CobG, putative [Pseudomonas putida KT2440]
                           496
                           45.56
                           54.23
                           56
                           903.0
     

     
     
87676
                           gb|AAL51896.1|
                           (AE009513) COBG PROTEIN [Brucella melitensis 16M]
                           506
                           36.75
                           47.62
                           63
                           652.0
     

     






      

          
GC ORFID: 44578How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2906Glimmer Score: 

          
Start: 2645775Stop: 2644294

          
Length: 1482


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2906 translation of PA2906Homolog Bit Score 774.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5296 (ORF: BLASTX 380.0), t_PA2906 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGCCGCCGAAACCAGTCGCGAGTGCCAACATCGGGCGGGGTGTACCGATGCCGTGGTCTGTCCCTGGGGGA 
CAGCGGTGCGGTCGCCGCGACGCCGATTCGAGTAGCGTTTTTGAACGACGACCAGACCCCGGCGCCCCTGCC 
CGTACCACGTCCGTCACCCTGTCCCGGCCTGCTGCGTATCGTCCAGGCGCTGGACGGCGGCATCTGCCGCAT 
CAAGCTCGATGCCGGTCGCCTggaCgccgcccaGGCacgcgccgtgGCGGCCgcggcgcgggatgcgccagc 
gcagtgatcgaggcgacCAACCgttccaaCCTGCAATTGCGTGGCGTCcgcCGCGGCGAGGAAGAGCGGCTC 
GTCCGCCGcCTGCTGGACGCCGGCCTCGGTCCCCGGCATGGGGCCCTGGCCGGCGCCGACGACGTGCGCAAC 
CTGATGCTCAGCCCGGCCGCCGGGCTCGATCCGCACCTGTCGCTGGACGTGCGCCCGCTGGCCGCTCGGCTG 
TTGCTGCGGCTCCAGGCGGACAGCCGCTACCACGCGCTGTCGGCCAAGTTCGCCATCCAGCTGGACGGCGGC 
GAAGACCTGGCGATGCTCGAACATCCCCATGACATCTGGCTCTCGCCGATGCCCGCGGCGCCGACCGCGACG 
CTGGTCTTCGGACTCGCCGGCTGCCCGGCCCGCGACCGCCCCCTGGCGGCGTTGCCGGCGGAGCGGGGCGAG 
TCCCTGGTGCTGGCGCTGCTCGACCTGTTCCTCGAACGCGCCCAGCCGCAACAGACGCGGATGCGCCACCTG 
TTGCAGGAGCTGGCCGGAGAATCCTTGCTGGAGGCCTTGCAGGCGCGCCTGGATTTCCCTCTGCGGCGTGAC 
GAGCGGGTGGCGGCCTGGCGGCGTCCGCCGGGGCGTGCGTGGAGTCATCTCGGCGTCCAGCCGCAACGCCAG 
CCGGGCCTGGCGATGGTCGGCGCGGCGGCGCCGCTCGGCCGGCTCGACAGCGCTTGCCTGGAAGGCCTGGCC 
GAGCTGGTCGAGCGCCATGGCGACGGCAGCCTGCGCCTGACCCCCTGGCAAGGCGTGCTCCTGCCGAACCTG 
GCGCAGGCCGAGGCCCACCAGGCGCTGCTCGGCCTGCGCGGACTCGGCCTGCTGACCGAGCCCGACGCGCCG 
TTGGCGCGGCTGATCGCCTGCAGCGGTTCCAGCGCCTGCGCCAGGGGCTTGGCCGACACCAAGGGCGACGCC 
TTGCGCCTGGCCGAACGCCTCGGCCCGCGCAGCGACCTGCCGCAACTGCACCTGTGCGGCTGCGAACGGTCC 
TGCGCCGCTGCCCACCGCGCGCCGCTCACCCTGCTGGCGCGCAGCGGCGGGTTCTACGACCTGTACCGGCGC 
GACCCATGCCACCCCGGATTCGGCCAGTTGCTGGCCAGCCGCCTGACTTTCGCCACGGCCGCCGATTACCTG 
GCGGCCCTGCCTTCCCAGCCCACTTCCGGAAAACCCGCATGA