ViewGene
Locus Name:
GeneID:
Location:

GeneID:1551
TrivialName: PA14_39460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39460
PAO1 Ortholog Locus:PA1940
Sequence Length:1140
Protein Length:379
Start: 3510492
Stop: 3511631
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05328.1|AE004620_7 (AE004620) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 376/379 (99%), Positives = 376/379 (99%)
Sequence:
ATGCGCGCACTCCTCACCCACGCCTGGCTGTTCCTCGGCAAATGGCTCGGCCGCCTGCTCCTCCTCCTGCTG
GCCGTCGGCCTCGGCGGCTGGGCCATCGGCAGCCTCTACTACGCCTGGAAATTCTCCGGCCCGGTGTCCGCG
GAAGAGCAGATCGCCCCGGACGAAGCCCGCATCACCCAGGCGATCATCCAGGACGCCATCCGCGTGGTCGAA
CAGCACCGCGACAACACCCGCGTCCTGCGCGATGCCCACGCCAAGGCCCACGGCTGCGTGAAGGCCGAATTC
AAGGTACGCGCCGACCTCGACCCGACCCTGCGTCGCGGCGTGTTCGCCGAAGCGGGCAAGAGCTGGAACGCC
TGGGTGCGCTTCTCCAACGGCAACGCCTACCCGCAGTTCGACAGCAAGAACGACGCGCGCGGCATGGCCATC
AAGCTGCTCGACGTGCCCGGCGAAAAACTCCTGCCCGGCCGCGGCCATGACGGCGAGCAGGACTTCGTTATG
TTCAACCAGCCGGTGTTCTTCATCCGCGACATCGCCGAATACCGGCAGAACTTCGCCGCCCAGGCCGACGGC
AAGAAAGCCCTGGCCTTCTTCCCCAACTGGAACCCCACCAGTTGGGAACTGCGCCACCTGCTGATCGCCCTG
CGCACCCTCGCCCCCGCCCCGGACAGCCCGCTGCACGCCGGCTACAACGGCATCTCGCCGTACAAGCTGGGC
GAACACAACATCAAGTTCCGCGTCGTCCCCGCCCCGGAGAAGTGCCCGGCCTACCAGCTACCGAAGCAGAAC
CAGGACCTGCCCAACTTCCTCCGCGCCGCCCTGTACCAGCAACTCTCCATCGACCGCACCCCCGCCTGCTAC
GCCTTCCAGGTGCAGCGCCAGGACCCGGCCAAGTACATGCCCATCGAAGACACCAGCGTCGAATGGAAGGAG
TCGGACGCGCCCTTCGCTACCATAGCCGACATCATTGTGCCAGCTCAGGATTTCGATAGCCGGGAACAGAAC
CTGTTCTGTGACAACCTTTCGTTCAACCCCTGGCACGCGTTGCCGGAGCATCGGCCGATCGGCGGGATCAAC
CGGTTGCGGAAGGCGGTTTACGAGGCGGTCAGTGGGTATAGGTTGGGGAGGAATGGGTGA
Translation:
MRALLTHAWLFLGKWLGRLLLLLLAVGLGGWAIGSLYYAWKFSGPVSAEEQIAPDEARITQAIIQDAIRVVE
QHRDNTRVLRDAHAKAHGCVKAEFKVRADLDPTLRRGVFAEAGKSWNAWVRFSNGNAYPQFDSKNDARGMAI
KLLDVPGEKLLPGRGHDGEQDFVMFNQPVFFIRDIAEYRQNFAAQADGKKALAFFPNWNPTSWELRHLLIAL
RTLAPAPDSPLHAGYNGISPYKLGEHNIKFRVVPAPEKCPAYQLPKQNQDLPNFLRAALYQQLSIDRTPACY
AFQVQRQDPAKYMPIEDTSVEWKESDAPFATIADIIVPAQDFDSREQNLFCDNLSFNPWHALPEHRPIGGIN
RLRKAVYEAVSGYRLGRNG*
AnnotationID:1560GeneID:1551
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1940
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3105




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20252




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32777




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1551_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1551
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2751
                           PA1940_tr
                           translation of PA1940
                           379
                           99.20
                           99.20
                           0
                           2010.0
     

     
     
86340
                           gb|AAG05328.1|AE004620_7
                           (AE004620) hypothetical protein PA1940 [Pseudomonas aeruginosa PAO1]
                           379
                           99.20
                           99.20
                           0
                           2010.0
     

     
     
86341
                           gb|AAB91707.1|
                           (AE000078) Y4iL [Rhizobium sp. NGR234]
                           504
                           25.39
                           34.12
                           197
                           470.0
     

     






      

          
GC ORFID: 44553How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1940Glimmer Score: 

          
Start: 1443419Stop: 1442280

          
Length: 1140


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1940 translation of PA1940Homolog Bit Score 778.0

          
Other Homologs:  t_PA1940 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCACTCCTCACCCACGCCTGGCTGTTCCTCGGCAAATGGCTCGGCCGCCTGCTCCTCCTCCTGCTG 
GCCGTCGGCCTCGGCGGCTGGGCCATCGGCAGCCTCTACTACGCCTGGAAATTCTCCGGCCCGGTGTCCGCG 
GAAGAGCAGATCGCCCCGGACGAAGCCCGCATCACCCAGGCGATCATCCAGGACGCCATCCGCGTGGTCGAA 
CAGCACCGCGACAACACCCGCGTCCTGCGCGATGCCCACGCCAAGGCCCACGGCTGCGTGAAGGCCGAATTC 
AAGGTACGCGCCGACCTCGACCCGACCCTGCGTCGCGGCGTGTTCGCCGAAGCGGGCAAGAGCTGGAACGCC 
TGGGTGCGCTTCTCCAACGGCAACGCCTACCCGCAGTTCGACAGCAAGAACGACGCGCGCGGCATGGCCATC 
AAGCTGCTCGACGTGCCCGGCGAAAAACTCCTGCCCGGCCGCGGCCATGACGGCGAGCAGGACTTCGTTATG 
TTCAACCAGCCGGTGTTCTTCATCCGCGACATCGCCGAATACCGGCAGAACTTCGCCGCCCAGGCCGACGGC 
AAGAAAGCCCTGGCCTTCTTCCCCAACTGGAACCCCACCAGTTGGGAACTGCGCCACCTGCTGATCGCCCTG 
CGCACCCTCGCCCCCGCCCCGGACAGCCCGCTGCACGCCGGCTACAACGGCATCTCGCCGTACAAGCTGGGC 
GAACACAACATCAAGTTCCGCGTCGTCCCCGCCCCGGAGAAGTGCCCGGCCTACCAGCTACCGAAGCAGAAC 
CAGGACCTGCCCAACTTCCTCCGCGCCGCCCTGTACCAGCAACTCTCCATCGACCGCACCCCCGCCTGCTAC 
GCCTTCCAGGTGCAGCGCCAGGACCCGGCCAAGTACATGCCCATCGAAGACACCAGCGTCGAATGGAAGGAG 
TCGGACGCGCCCTTCGCTACCATAGCCGACATCATTGTGCCAGCTCAGGATTTCGATAGCCGGGAACAGAAC 
CTGTTCTGTGACAACCTTTCGTTCAACCCCTGGCACGCGTTGCCGGAGCATCGGCCGATCGGCGGGATCAAC 
CGGTTGCGGAAGGCGGTTTACGAGGCGGTCAGTGGGTATAGGTTGGGGAGGAATGGGTGA