ViewGene
Locus Name:
GeneID:
Location:

GeneID:1534
TrivialName: PA14_26170
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26170
PAO1 Ortholog Locus:PA2928
Sequence Length:1227
Protein Length:408
Start: 2284759
Stop: 2285985
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
PA14_26170 (GeneID 1534) replaced by PA14_26165 (GeneID 7395). Homology: gb|AAG06316.1|AE004719_2 (AE004719) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 388/397 (97%), Positives = 390/397 (98%)
Sequence:
CTGGATGCCGACAACGAGCGCGGCGACGACTGGGGTTCCGGCGAACTGCTGGGCCAGTCGTCGCGCTACCTG
TTCTTCCTGCGCAACGAACTCTACGTACTCGACCGGCGCGACGCTGCCCCTGCGCTGGCGTTCGACGAACTG
GAGCGGCGCACTGGCGGCCTGCCGTTGAAGTCGGCGCCCTGGGGGAAGGACGCCTATCGCTACGACGAAGGC
CGGGGCGGATTGCTGATGCTCGCCCTGGACGGTCGCGTCTGGTTCCTCGACGGCGACAGCCTGGCCCTGCGC
GAAGCCCCGGAAGTCGATGCCGCGCGGTATTTCCACGGCGACCCGCCGCCGCCGGCGAGTGCCGGGATCGCT
TGGCAGGCGCCGGGCCTGACGCGCCTGCCCGACGGACGCCTGCTGATCCTCGCCAGCGATCACGAGGCCCGC
GCGCTGGAGCGTGGCGAGGCGCTGCCGGCAGCGAACCAACGGGCGCGACGCCAGCGCCTGTCACTGGGCACC
CTGGATTGGCGGTCGCCGGCGGAGAATCGACTGCGTCCACTGCTCGACGCGGCCTTCCTGCAGGCTGGCCTG
CTGCCCGATCCAGCCGCTGCCGAAGAGCCGCAGCGGCTGCTCGAGCGACCGTCCGAGCGGCAGCGCCAGCGT
CCGTCGCTGCCGTCCGAGCCGCAGCCGCCGGAAGAGTTCGACGAGCGCGTGGAGCGTTTTTCCAGTACCCGT
GCGTTCCTTGCGGCGCGCGACGCCTACCGCCAGGAACGGCGACGCTGGATCGCCGCGCACGACGCCTGGCGG
GAACGGGTCGCCGACCTGGAGGCGGCGGCGGATGCCGAGTACCGTCGCCGGCGCGACGAGCAGACGCGCGAG
GAGGCGTTGTACCGTCGCTATGCCTCGGCGCTGCCGGGCGGCGATTCCAGGTTGGCGCGCCGTCCCTGGCGA
GTCGACGGCAACTGGCTGGTGCTGCACCGGCGCAGCCTGGCCGAGCGTAGCGAACTGCTGCTCAGCTCGGTG
TCTGCCGACGGCAGCTTGCTCTGGACCCTGGGGCTGCCCATCGAGCGTCCCGAACGGCTGTTCCGCCTGGAT
GCCCGCAACCTGCTTCTCAGCGGCCGTGGAGAGGACGGCGGACGGTTGGTGCGGGTCGATCTGCGCCGGGGC
AGCGGCATCGTCCATCGCCTCGGGCGCGGCGGCGCGCCATTGCAGCGGGTCGAGTGGCCCGAAGGCCAACCG
TGA
Translation:
MDADNERGDDWGSGELLGQSSRYLFFLRNELYVLDRRDAAPALAFDELERRTGGLPLKSAPWGKDAYRYDEG
RGGLLMLALDGRVWFLDGDSLALREAPEVDAARYFHGDPPPPASAGIAWQAPGLTRLPDGRLLILASDHEAR
ALERGEALPAANQRARRQRLSLGTLDWRSPAENRLRPLLDAAFLQAGLLPDPAAAEEPQRLLERPSERQRQR
PSLPSEPQPPEEFDERVERFSSTRAFLAARDAYRQERRRWIAAHDAWRERVADLEAAADAEYRRRRDEQTRE
EALYRRYASALPGGDSRLARRPWRVDGNWLVLHRRSLAERSELLLSSVSADGSLLWTLGLPIERPERLFRLD
ARNLLLSGRGEDGGRLVRVDLRRGSGIVHRLGRGGAPLQRVEWPEGQP*
AnnotationID:1543GeneID:1534
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 19:07:00
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
gi|84320308|ref|ZP_00968689.1|  hypothetical protein PaerC_01001940 [Pseudomonas aeruginosa C3719]
Length=502

 Score =  810 bits (2093),  Expect = 0.0
 Identities = 401/408 (98%), Positives = 403/408 (98%), Gaps = 0/408 (0%)

gi|84326416|ref|ZP_00974443.1|  hypothetical protein Paer2_01002331 [Pseudomonas aeruginosa 2192]
Length=502

 Score =  799 bits (2063),  Expect = 0.0
 Identities = 396/408 (97%), Positives = 400/408 (98%), Gaps = 0/408 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:
PA14_26170 (GeneID 1534) replaced by PA14_26165 (GeneID 7395).


















    ReferenceID:14383




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20217




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36108




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1534_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1534
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2724
                           PA2928_tr
                           translation of PA2928
                           408
                           95.09
                           95.58
                           1
                           2006.0
     

     
     
85446
                           gb|AAG06316.1|AE004719_2
                           (AE004719) hypothetical protein PA2928 [Pseudomonas aeruginosa PAO1]
                           408
                           95.09
                           95.58
                           1
                           2006.0
     

     






      

          
GC ORFID: 44536How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2928Glimmer Score: 

          
Start: 2669166Stop: 2667940

          
Length: 1227


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2928 translation of PA2928Homolog Bit Score 781.0

          
Other Homologs:  t_PA2928 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGGATGCCGACAACGAGCGCGGCGACGACTGGGGTTCCGGCGAACTGCTGGGCCAGTCGTCGCGCTACCTG 
TTCTTCCTGCGCAACGAACTCTACGTACTCGACCGGCGCGACGCTGCCCCTGCGCTGGCGTTCGACGAACTG 
GAGCGGCGCACTGGCGGCCTGCCGTTGAAGTCGGCGCCCTGGGGGAAGGACGCCTATCGCTACGACGAAGGC 
CGGGGCGGATTGCTGATGCTCGCCCTGGACGGTCGCGTCTGGTTCCTCGACGGCGACAGCCTGGCCCTGCGC 
GAAGCCCCGGAAGTCGATGCCGCGCGGTATTTCCACGGCGACCCGCCGCCGCCGGCGAGTGCCGGGATCGCT 
TGGCAGGCGCCGGGCCTGACGCGCCTGCCCGACGGACGCCTGCTGATCCTCGCCAGCGATCACGAGGCCCGC 
GCGCTGGAGCGTGGCGAGGCGCTGCCGGCAGCGAACCAACGGGCGCGACGCCAGCGCCTGTCACTGGGCACC 
CTGGATTGGCGGTCGCCGGCGGAGAATCGACTGCGTCCACTGCTCGACGCGGCCTTCCTGCAGGCTGGCCTG 
CTGCCCGATCCAGCCGCTGCCGAAGAGCCGCAGCGGCTGCTCGAGCGACCGTCCGAGCGGCAGCGCCAGCGT 
CCGTCGCTGCCGTCCGAGCCGCAGCCGCCGGAAGAGTTCGACGAGCGCGTGGAGCGTTTTTCCAGTACCCGT 
GCGTTCCTTGCGGCGCGCGACGCCTACCGCCAGGAACGGCGACGCTGGATCGCCGCGCACGACGCCTGGCGG 
GAACGGGTCGCCGACCTGGAGGCGGCGGCGGATGCCGAGTACCGTCGCCGGCGCGACGAGCAGACGCGCGAG 
GAGGCGTTGTACCGTCGCTATGCCTCGGCGCTGCCGGGCGGCGATTCCAGGTTGGCGCGCCGTCCCTGGCGA 
GTCGACGGCAACTGGCTGGTGCTGCACCGGCGCAGCCTGGCCGAGCGTAGCGAACTGCTGCTCAGCTCGGTG 
TCTGCCGACGGCAGCTTGCTCTGGACCCTGGGGCTGCCCATCGAGCGTCCCGAACGGCTGTTCCGCCTGGAT 
GCCCGCAACCTGCTTCTCAGCGGCCGTGGAGAGGACGGCGGACGGTTGGTGCGGGTCGATCTGCGCCGGGGC 
AGCGGCATCGTCCATCGCCTCGGGCGCGGCGGCGCGCCATTGCAGCGGGTCGAGTGGCCCGAAGGCCAACCG 
TGA