ViewGene
Locus Name:
GeneID:
Location:

GeneID:1525
TrivialName: PA14_61170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61170
PAO1 Ortholog Locus:PA4622
Sequence Length:1212
Protein Length:403
Start: 5455038
Stop: 5456249
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08010.1|AE004876_5 (AE004876) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 403/403 (100%), Positives = 403/403 (100%)
Sequence:
ATGTCCAGCCAACCCAGTTCCCTGCTCCGCCATCGCCCCTTCCTCGCCTTCTGGCTGGCCCGCGTCTGCACC
GCCAGCGGCTTCCAGATGCTCACCGTGGCCATCGGCTGGCACATCTACGAACTGACCGGCAATGTCCTCGAC
CTGGGCCTGGTAGGCCTGGTCGAATTCCTCCCGCGGGTACTGTTCATGCTCCACACCGGGCACGTTGCCGAC
CGCTACGACCGACGCAGGATCGCCGCCCTCTGCCAGGCCGGCCAGGCCCTGGTGGCGGTGGCACTGGTGCTC
GGCGCGGCTTCGGGAGAGATCACCCGCAACATGATCTTCGTCCTCGCCTTCGCCCTCGGTACCGCCCGCGCC
TTCGAAATGCCGACCACCCAGGCGCTGCTGCCGAACCTGGTACCGGCCGGGCTGTTCCCGCGCGCGGTGGCC
GCTTCGGCTTCGGCGATGCAGGCGGCGACCATTGCCGCCCCAGCCCTCGGCGGCCTGCTCTATGCGTTCGGT
GCCTCCTGGGTCTACGTGCCGACCGCGACTCTCTACGTCCTCGCCTGCGTCCTGACGCTCAGCCTGCCGGTA
CGCAACCAGCCGCTCACCCAGGGCAAGGCCACCCTCGACTCGCTGCTCGCCGGCATCCGTTTCATCCGCAGC
CGACCGGACATCTTCGGCGCAATCTCCCTCGACCTGTTCGCCGTGCTCCTCGGCGGCGCCACCGCCCTGCTC
CCGGTGTTCGCCAAGGACATCCTGCTCACCGGGCCCTGGGGCCTCGGCCTGCTGCGCTCGGCTCCAGCGGTG
GGCGCCCTGGCGATGTCGTTCTGGCTGGCGCACTTCAGCATCGAACGCAACGTCGGGCGGATCATGTTCCTC
TCCGTGGGCATCTTCGGCCTGGCAACCATCGCCTTCGGCCTGTCGAAATCGTTCTGGCTGTCCCTCGGCGTG
CTGGTGGTACTCGGCGCCGCGGACATGGTCAGCATGGTCATCCGCGGCGCCTTCGTGCAGCTCGAGACCCCC
GACGAGATGCGCGGCCGGGTCAGCGCGGTGAACGGCCTGTTCATCGGCGCCTCGAACCAGCTCGGCGAGTTC
GAGTCCGGGCTCACCGCACACTGGTTCGGCACGGTACCGGCAGTGGTCCTCGGCGGGATCGGCACCCTGGTG
GTCACCGGAGCATGGATGAAGCTGTTCCCTAGCCTGGCGCAACGCGACCGCCTGCACTGA
Translation:
MSSQPSSLLRHRPFLAFWLARVCTASGFQMLTVAIGWHIYELTGNVLDLGLVGLVEFLPRVLFMLHTGHVAD
RYDRRRIAALCQAGQALVAVALVLGAASGEITRNMIFVLAFALGTARAFEMPTTQALLPNLVPAGLFPRAVA
ASASAMQAATIAAPALGGLLYAFGASWVYVPTATLYVLACVLTLSLPVRNQPLTQGKATLDSLLAGIRFIRS
RPDIFGAISLDLFAVLLGGATALLPVFAKDILLTGPWGLGLLRSAPAVGALAMSFWLAHFSIERNVGRIMFL
SVGIFGLATIAFGLSKSFWLSLGVLVVLGAADMVSMVIRGAFVQLETPDEMRGRVSAVNGLFIGASNQLGEF
ESGLTAHWFGTVPAVVLGGIGTLVVTGAWMKLFPSLAQRDRLH*
AnnotationID:1534GeneID:1525
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 08:08:16
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane protein
Cell Localization:()
Synonyms:PA4622
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70225.1|AE016662_1 (AE016791) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 406

 Score =  645 bits (1664), Expect = 0.0
 Identities = 321/401 (80%), Positives = 356/401 (88%)


>emb|CAD18328.1| (AL646083) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 424

 Score =  444 bits (1143), Expect = e-124
 Identities = 233/403 (57%), Positives = 285/403 (70%), Gaps = 5/403 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3053




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20199




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31600




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1525_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1525
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2714
                           PA4622_tr
                           translation of PA4622
                           403
                           99.99
                           99.99
                           0
                           2025.0
     

     
     
85345
                           gb|AAG08010.1|AE004876_5
                           (AE004876) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           403
                           99.99
                           99.99
                           0
                           2025.0
     

     
     
85346
                           gb|AAN70225.1|AE016662_1
                           (AE016791) membrane protein, putative [Pseudomonas putida KT2440]
                           406
                           79.55
                           88.17
                           3
                           1664.0
     

     
     
85347
                           emb|CAD18328.1|
                           (AL646083) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           425
                           55.76
                           68.94
                           23
                           1146.0
     

     
     
85348
                           emb|CAE09548.1|
                           (BX571658) PUTATIVE MFS TRANSPORTER [Wolinella succinogenes]
                           419
                           54.41
                           67.78
                           20
                           1053.0
     

     






      

          
GC ORFID: 44527How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4622Glimmer Score: 

          
Start: 4718718Stop: 4719929

          
Length: 1212


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4622 translation of PA4622Homolog Bit Score 784.0

          
Other Homologs:  t_PA4622 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAGCCAACCCAGTTCCCTGCTCCGCCATCGCCCCTTCCTCGCCTTCTGGCTGGCCCGCGTCTGCACC 
GCCAGCGGCTTCCAGATGCTCACCGTGGCCATCGGCTGGCACATCTACGAACTGACCGGCAATGTCCTCGAC 
CTGGGCCTGGTAGGCCTGGTCGAATTCCTCCCGCGGGTACTGTTCATGCTCCACACCGGGCACGTTGCCGAC 
CGCTACGACCGACGCAGGATCGCCGCCCTCTGCCAGGCCGGCCAGGCCCTGGTGGCGGTGGCACTGGTGCTC 
GGCGCGGCTTCGGGAGAGATCACCCGCAACATGATCTTCGTCCTCGCCTTCGCCCTCGGTACCGCCCGCGCC 
TTCGAAATGCCGACCACCCAGGCGCTGCTGCCGAACCTGGTACCGGCCGGGCTGTTCCCGCGCGCGGTGGCC 
GCTTCGGCTTCGGCGATGCAGGCGGCGACCATTGCCGCCCCAGCCCTCGGCGGCCTGCTCTATGCGTTCGGT 
GCCTCCTGGGTCTACGTGCCGACCGCGACTCTCTACGTCCTCGCCTGCGTCCTGACGCTCAGCCTGCCGGTA 
CGCAACCAGCCGCTCACCCAGGGCAAGGCCACCCTCGACTCGCTGCTCGCCGGCATCCGTTTCATCCGCAGC 
CGACCGGACATCTTCGGCGCAATCTCCCTCGACCTGTTCGCCGTGCTCCTCGGCGGCGCCACCGCCCTGCTC 
CCGGTGTTCGCCAAGGACATCCTGCTCACCGGGCCCTGGGGCCTCGGCCTGCTGCGCTCGGCTCCAGCGGTG 
GGCGCCCTGGCGATGTCGTTCTGGCTGGCGCACTTCAGCATCGAACGCAACGTCGGGCGGATCATGTTCCTC 
TCCGTGGGCATCTTCGGCCTGGCAACCATCGCCTTCGGCCTGTCGAAATCGTTCTGGCTGTCCCTCGGCGTG 
CTGGTGGTACTCGGCGCCGCGGACATGGTCAGCATGGTCATCCGCGGCGCCTTCGTGCAGCTCGAGACCCCC 
GACGAGATGCGCGGCCGGGTCAGCGCGGTGAACGGCCTGTTCATCGGCGCCTCGAACCAGCTCGGCGAGTTC 
GAGTCCGGGCTCACCGCACACTGGTTCGGCACGGTACCGGCAGTGGTCCTCGGCGGGATCGGCACCCTGGTG 
GTCACCGGAGCATGGATGAAGCTGTTCCCTAGCCTGGCGCAACGCGACCGCCTGCACTGA