ViewGene
Locus Name:
GeneID:
Location:

GeneID:1519
TrivialName: PA14_20580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20580
PAO1 Ortholog Locus:PA3364
Sequence Length:1158
Protein Length:385
Start: 1770873
Stop: 1772030
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06752.1|AE004758_9 (AE004758) aliphatic amidase expression-regulating protein [Pseudomonas aeruginosa PAO1]
Identities = 385/385 (100%), Positives = 385/385 (100%)
Sequence:
ATGGGATCGCACCAGGAGCGGCCGCTGATCGGCCTGCTGTTCTCCGAAACCGGTGTCACCGCCGATATCGAG
CGCTCGCAGCGCTATGGCGCATTGCTCGCGGTCGAGCAACTGAATCGCGAGGGCGGCGTCGGCGGTCGCCCG
ATCGAAACGCTGTCCCAGGACCCCGGCGGCGATCCGGACCGCTATCGGCTGTGCGCCGAGGACTTCATTCGC
AACCGGGGGGTACGGTTCCTCGTGGGCTGCTACATGTCGCACACGCGCAAGGCGGTGATGCCGGTGGTCGAG
CGCGCCGACGCGCTGCTCTGCTACCCGACTCCCTACGAGGGCTTCGAGTATTCGCCGAACATCGTCTACGGC
GGTCCGGCGCCGAACCAGAACAGTGCGCCGCTGGCGGCGTACCTGATTCGCCACTACGGCGAGCGGGTGGTG
TTCATCGGCTCGGACTACATCTATCCGCGGGAAAGCAACCATGTGATGCGCCACCTGTACCGCCAGCACGGC
GGCACGGTGCTCGAGGAAATCTACATTCCGCTGTATCCCTCCGACGACGACGTGCAGCGCGCCGTCGAGCGC
ATCTACCAGGCGCGCGCCGACGTGGTCTTCTCCACCGTGGTGGGCACCGGCACCGCCGAGCTGTATCGCGCC
ATCGCCCGTCGCTACGGCGATGGCAGGCGGCCGCCGATCGCCAGCCTGACCACCAGCGAGGCGGAGGTGGCG
AAGATGGAGAGCGACGTGGCGGAGGGGCAGGTGGTGGTCGCGCCGTACTTCTCCAGCATCGACACGGCCGCC
AGCCGCGCCTTCGTCCAGGCCTGCCATGGCTTCTTCCCGGAAAACGCGACCATCACCGCCTGGGCCGAGGCG
GCCTACTGGCAGACCTTGCTGCTTGGCCGCGCCGCGCAGGCCGCAGGCAGTTGGCGAGTGGAAGACGTGCAG
CGGCACCTGTACGACATTTGCATCGACGCGCCGCAGGGGCCGGTCCGGGTGGAGCGCCAGAACAACCACAGC
CGCCTGTCTTCGCGCATCGCGGAAATCGATGCGCGCGGCGTGTTCCAGGTCCGCTGGCAGTCGCCCGAACCG
ATTCGCCCCGATCCTTATGTCGTCGTGCATAACCTCGACGACTGGTCCGCCAGCATGGGCGGGGGAGCGCTC
CCATGA
Translation:
MGSHQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIR
NRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVV
FIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDVQRAVERIYQARADVVFSTVVGTGTAELYRA
IARRYGDGRRPPIASLTTSEAEVAKMESDVAEGQVVVAPYFSSIDTAASRAFVQACHGFFPENATITAWAEA
AYWQTLLLGRAAQAAGSWRVEDVQRHLYDICIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEP
IRPDPYVVVHNLDDWSASMGGGALP*
AnnotationID:1528GeneID:1519
AnnotatorUID: danlee
Modification Date/Time: 2004-02-18 10:10:38
Gene Name:amiC
Confidence Code:1
GeneProduct:aliphatic amidase expression-regulating protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0683
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:
amiEBCRS (Pseudomonas aeruginosa)






   
Comment:


















    ReferenceID:3041




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17049




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search






    
Reference Type:Blast (text/plain)







    
Data:PA3364_CDS.cgi


    		




 
URL:

















    ReferenceID:20187




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1519
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2707
                           PA3364_tr
                           translation of PA3364
                           385
                           99.99
                           99.99
                           0
                           2028.0
     

     
     
85161
                           gb|AAG06752.1|AE004758_9
                           (AE004758) aliphatic amidase expression-regulating protein [Pseudomonas aeruginosa PAO1]
                           385
                           99.99
                           99.99
                           0
                           2028.0
     

     
     
85162
                           emb|CAA32024.1|
                           (X13776) amiC [Pseudomonas aeruginosa]
                           385
                           98.18
                           98.70
                           0
                           1989.0
     

     
     
85165
                           gb|AAO55928.1|
                           (AE016864) regulatory protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           387
                           41.86
                           57.62
                           7
                           739.0
     

     
     
85163
                           gb|AAL46215.1|
                           (AE008973) two component sensor kinase [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           400
                           41.75
                           58.75
                           32
                           802.0
     

     






      

          
GC ORFID: 44521How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3364Glimmer Score: 

          
Start: 3183059Stop: 3181902

          
Length: 1158


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3364 translation of PA3364Homolog Bit Score 785.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1189 (ORF: BLASTX 294.0), t_PA3364 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGATCGCACCAGGAGCGGCCGCTGATCGGCCTGCTGTTCTCCGAAACCGGTGTCACCGCCGATATCGAG 
CGCTCGCAGCGCTATGGCGCATTGCTCGCGGTCGAGCAACTGAATCGCGAGGGCGGCGTCGGCGGTCGCCCG 
ATCGAAACGCTGTCCCAGGACCCCGGCGGCGATCCGGACCGCTATCGGCTGTGCGCCGAGGACTTCATTCGC 
AACCGGGGGGTACGGTTCCTCGTGGGCTGCTACATGTCGCACACGCGCAAGGCGGTGATGCCGGTGGTCGAG 
CGCGCCGACGCGCTGCTCTGCTACCCGACTCCCTACGAGGGCTTCGAGTATTCGCCGAACATCGTCTACGGC 
GGTCCGGCGCCGAACCAGAACAGTGCGCCGCTGGCGGCGTACCTGATTCGCCACTACGGCGAGCGGGTGGTG 
TTCATCGGCTCGGACTACATCTATCCGCGGGAAAGCAACCATGTGATGCGCCACCTGTACCGCCAGCACGGC 
GGCACGGTGCTCGAGGAAATCTACATTCCGCTGTATCCCTCCGACGACGACGTGCAGCGCGCCGTCGAGCGC 
ATCTACCAGGCGCGCGCCGACGTGGTCTTCTCCACCGTGGTGGGCACCGGCACCGCCGAGCTGTATCGCGCC 
ATCGCCCGTCGCTACGGCGATGGCAGGCGGCCGCCGATCGCCAGCCTGACCACCAGCGAGGCGGAGGTGGCG 
AAGATGGAGAGCGACGTGGCGGAGGGGCAGGTGGTGGTCGCGCCGTACTTCTCCAGCATCGACACGGCCGCC 
AGCCGCGCCTTCGTCCAGGCCTGCCATGGCTTCTTCCCGGAAAACGCGACCATCACCGCCTGGGCCGAGGCG 
GCCTACTGGCAGACCTTGCTGCTTGGCCGCGCCGCGCAGGCCGCAGGCAGTTGGCGAGTGGAAGACGTGCAG 
CGGCACCTGTACGACATTTGCATCGACGCGCCGCAGGGGCCGGTCCGGGTGGAGCGCCAGAACAACCACAGC 
CGCCTGTCTTCGCGCATCGCGGAAATCGATGCGCGCGGCGTGTTCCAGGTCCGCTGGCAGTCGCCCGAACCG 
ATTCGCCCCGATCCTTATGTCGTCGTGCATAACCTCGACGACTGGTCCGCCAGCATGGGCGGGGGAGCGCTC 
CCATGA