ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1497

TrivialName: PA14_09370

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_09370

PAO1 Ortholog Locus: PA4219

Sequence Length: 1176

Protein Length: 391

Start: 802793

Stop: 803968

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07607.1|AE004838_11 (AE004838) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 388/391 (99%), Positives = 390/391 (99%)

Sequence:

CTGGACCTCCTGCTGAACCTGCACAAGAGCCTGTTCGTCGGCTTCCCCGGGCGGGTGCTGGTCAGCCTGTTC
GGCGTATCGCTGTTGCTGCTGTGCCTGGCCGGCGTGCTGCTGCACAGCCGCCGCTGGCGCGACCTGCGGCGT
TGGCGGCGGGATCGCGGGCTGCGCCTGGCGCTGTTCGACCTGCATGGCCTGATCGGCATCTGGGGACTGCCC
TGGCTGCTGTTGTTCGGTTTCACCGGCGCGCTCAGCGGGCTGGGCGCTCTCGGGACCCTGCTGCTGGCGCCG
GTGGCCTACCCGCAGGAACCGAACCGGGTGTTTGTCGAGTTGATGGGACCGCCGCCGCCCGCCGCCGAGGGG
CGGCCATTGGCGTCCCGCATCGATCTCGACCGCCTGCTTGCCGGCGATGCCGTGCGGGCGCCCGGCTTCGTT
GCCCAGCGTTTGAGCCTCAGCCATGCCGGGGATGTCGCCGGCAGCGTGGAGATCGCCGGTATCCAGCGTGGC
CTGCCGAGTACCGCGAACTTCGAGCGGCACCGCTATCGGCTGGCCGACGGCGCCCTGCTCGGCGAGCGCAGC
TCGGCGCAGCGCGGGTTCTGGCTGCGCGCCTTCATCGCCGTGCAGCCGTTGCATTTCGCCCAGTACCAGTGG
CTCGGGCCGGGCTGGTCCGCCGCGTTGCGCGGCCTGCACCTGGCGATGGGCCTCGGCGCCTGCCTGCTCTGC
GCCAGCGGCTTGTACCTGTGGCTGCAACGACGCGCCTCGGCGCCGGACGCCCGCGTACGGCTCTTGCAGCGC
CTGAGCCAGGGTTTCTGTGCCGGCCTGGTGGCGGCGGCCGCGTTGCTCCTGCTGGGGCTGCAACTCGCCCCC
TCGGAGCTACTCGCCGGACCCTGGCCGGGGCGGCTGTTCCTTGTCCTGTGGGCCGCCGCTGGCCTGGCGGCG
TTGCTGCTGCCGGGCGACTGGCCGCTGGCGCGCGGGTTGCTCGGCGTCGCCGGGTTGGCCTGCCTGGCGGCC
GCCGTCGCGCACCTGGCGCCCTGGCTCATGCGCGGCCGGCTGCCGGCCCTGGGCCCCGACCTCACCTTGATC
CTCTGCGGCGCGCTGCTCATCCGGCACGCCTGGATGCAGGCGCGCGCCGCCGCGCCACCCGCCCACCCCCGT
GTCACCGGAGACCACCATGCTTGA

Translation:

MDLLLNLHKSLFVGFPGRVLVSLFGVSLLLLCLAGVLLHSRRWRDLRRWRRDRGLRLALFDLHGLIGIWGLP
WLLLFGFTGALSGLGALGTLLLAPVAYPQEPNRVFVELMGPPPPAAEGRPLASRIDLDRLLAGDAVRAPGFV
AQRLSLSHAGDVAGSVEIAGIQRGLPSTANFERHRYRLADGALLGERSSAQRGFWLRAFIAVQPLHFAQYQW
LGPGWSAALRGLHLAMGLGACLLCASGLYLWLQRRASAPDARVRLLQRLSQGFCAGLVAAAALLLLGLQLAP
SELLAGPWPGRLFLVLWAAAGLAALLLPGDWPLARGLLGVAGLACLAAAVAHLAPWLMRGRLPALGPDLTLI
LCGALLIRHAWMQARAAAPPAHPRVTGDHHA*

AnnotationID:1506 GeneID:1497

AnnotatorUID: diggins

Modification Date/Time: 2005-04-01 06:06:40

Gene Name:

Confidence Code: 3

GeneProduct: putative membrane protein

Cell Localization: ()

Synonyms: PA4219

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG3182

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG3182, PiuB, Uncharacterized iron-regulated membrane protein
CD-Length = 442 residues,  88.9% aligned
Score =  153 bits (389), Expect = 2e-38
Identities = 81/401 (20%), Positives = 109/401 (27%), Gaps = 19/401 (4%)

Genomic Context:

Comment:

ReferenceID:14375

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20142

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36923

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1497_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1497

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2677 PA4219_tr translation of PA4219 394 98.73 98.98 3 2028.0

84552 gb|AAG07607.1|AE004838_11 (AE004838) hypothetical protein PA4219 [Pseudomonas aeruginosa PAO1] 394 98.73 98.98 3 2028.0

84553 gb|AAC43215.1| (U03161) unknown [Pseudomonas aeruginosa] 394 98.73 98.98 3 2028.0

GC ORFID: `44499`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4219`	Glimmer Score:
Start: `4151144`	Stop: `4149969`
Length: `1176`
Start Codon: `CTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4219 translation of PA4219`	Homolog Bit Score `790.0`
Other Homologs: `t_PA4219 (ORF: GLIMMER)`
GC ORF Sequence
CTGGACCTCCTGCTGAACCTGCACAAGAGCCTGTTCGTCGGCTTCCCCGGGCGGGTGCTGGTCAGCCTGTTC GGCGTATCGCTGTTGCTGCTGTGCCTGGCCGGCGTGCTGCTGCACAGCCGCCGCTGGCGCGACCTGCGGCGT TGGCGGCGGGATCGCGGGCTGCGCCTGGCGCTGTTCGACCTGCATGGCCTGATCGGCATCTGGGGACTGCCC TGGCTGCTGTTGTTCGGTTTCACCGGCGCGCTCAGCGGGCTGGGCGCTCTCGGGACCCTGCTGCTGGCGCCG GTGGCCTACCCGCAGGAACCGAACCGGGTGTTTGTCGAGTTGATGGGACCGCCGCCGCCCGCCGCCGAGGGG CGGCCATTGGCGTCCCGCATCGATCTCGACCGCCTGCTTGCCGGCGATGCCGTGCGGGCGCCCGGCTTCGTT GCCCAGCGTTTGAGCCTCAGCCATGCCGGGGATGTCGCCGGCAGCGTGGAGATCGCCGGTATCCAGCGTGGC CTGCCGAGTACCGCGAACTTCGAGCGGCACCGCTATCGGCTGGCCGACGGCGCCCTGCTCGGCGAGCGCAGC TCGGCGCAGCGCGGGTTCTGGCTGCGCGCCTTCATCGCCGTGCAGCCGTTGCATTTCGCCCAGTACCAGTGG CTCGGGCCGGGCTGGTCCGCCGCGTTGCGCGGCCTGCACCTGGCGATGGGCCTCGGCGCCTGCCTGCTCTGC GCCAGCGGCTTGTACCTGTGGCTGCAACGACGCGCCTCGGCGCCGGACGCCCGCGTACGGCTCTTGCAGCGC CTGAGCCAGGGTTTCTGTGCCGGCCTGGTGGCGGCGGCCGCGTTGCTCCTGCTGGGGCTGCAACTCGCCCCC TCGGAGCTACTCGCCGGACCCTGGCCGGGGCGGCTGTTCCTTGTCCTGTGGGCCGCCGCTGGCCTGGCGGCG TTGCTGCTGCCGGGCGACTGGCCGCTGGCGCGCGGGTTGCTCGGCGTCGCCGGGTTGGCCTGCCTGGCGGCC GCCGTCGCGCACCTGGCGCCCTGGCTCATGCGCGGCCGGCTGCCGGCCCTGGGCCCCGACCTCACCTTGATC CTCTGCGGCGCGCTGCTCATCCGGCACGCCTGGATGCAGGCGCGCGCCGCCGCGCCACCCGCCCACCCCCGT GTCACCGGAGACCACCATGCTTGA