ViewGene
Locus Name:
GeneID:
Location:

GeneID:1483
TrivialName: PA14_07280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07280
PAO1 Ortholog Locus:PA0559
Sequence Length:1179
Protein Length:392
Start: 627524
Stop: 626346
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03948.1|AE004492_7 (AE004492) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 392/392 (100%), Positives = 392/392 (100%)
Sequence:
GTGGCAAGTACAGATGTGCTGATCGTTGGCGCCGGGGCGGCCGGGCTGATGTGTGCGATGACGGCGGCCGGG
CGCGGGCGCCGCGTGCGGGTACTCGACCACGCCAACAAGGCCGGCAAGAAGATCCTCATGTCCGGCGGCGGG
CGCTGCAATTTCACCAACCTGTACACCGAGCCGGCCAACTTCCTTTCGCGCAACCCGCACTTCTGCAAGTCG
GCGCTGGCCCGCTACACCCAGTGGGACTTCATCGGCCTGGTGGCCAAGCACCAGGTGCCGTACCACGAGAAG
AAACTCGGCCAGCTGTTCTGCGACAACAAGTCCAGCGACATCCTCGAGATGCTGCTGCGCGAATGCGCCGAG
GCCGGAGCGGAAATCCTGCTGGACACCTCGATCGAAGAGATCGCCCGCGACGACGCCGGCTACCGCCTGCGT
ACCAGCGCCGGCGAGATGCGCTGCGAGTCGCTGGTGATCGCCAGCGGCGGCCTGTCGATCCCGACCCTCGGC
GCCAGCGGTTTCGGCTACCAGGTGGCGCGCCAGTTCGGCCATGAGGTGCTGCCGACCCGCGCCGGGCTGGTG
CCGTTCACCATCACCGACCAATTGAAGGAGCTGTGCGCCGAGCTTTCCGGCACCTCGGTGGATTGCCGGGTG
AGCTGCAACGGCCAGGCGTTCCGCGAGAACCTGCTGTTCACCCACCGCGGCCTCAGCGGCCCGGCGATGTTG
CAGATTTCCTCCTACTGGCAACCGGGCGATACCCTGGAAATCGACCTGCTGCCGGACCACGACGCCAGCGAA
TGGCTGGCGCAGCAACAGCGCGAGCGTCCCAACAGCGAGCTGAAGACCCTGCTCGCCGAGTTGTTCACCAAG
AAGCTCGCCGGACTGCTGGCCGACCGCTGGTTCGTCTCCAAGCCGATGAAACAGTACACCCCGACCGAACTG
GCGGGTATCGCCGGGCAGCTTTCGGCCTGGCGGGTCACGCCCTCGGGCACCGAGGGCTACCGCACCGCGGAA
GTGACCCTGGGCGGGGTGAGCACCGACGAAGTGTCGTCGAAGACCATGGAGTCGCAGCGCTCGCCGGGGCTG
TATTTCGTCGGCGAAGTACTGGACGTCAGCGGCCACCTCGGCGGCTTCAACTTCCAGTGGGCCTGGGCCTCG
GGTTATGCGGCGGGACAGTACGCCTAG
Translation:
MASTDVLIVGAGAAGLMCAMTAAGRGRRVRVLDHANKAGKKILMSGGGRCNFTNLYTEPANFLSRNPHFCKS
ALARYTQWDFIGLVAKHQVPYHEKKLGQLFCDNKSSDILEMLLRECAEAGAEILLDTSIEEIARDDAGYRLR
TSAGEMRCESLVIASGGLSIPTLGASGFGYQVARQFGHEVLPTRAGLVPFTITDQLKELCAELSGTSVDCRV
SCNGQAFRENLLFTHRGLSGPAMLQISSYWQPGDTLEIDLLPDHDASEWLAQQQRERPNSELKTLLAELFTK
KLAGLLADRWFVSKPMKQYTPTELAGIAGQLSAWRVTPSGTEGYRTAEVTLGGVSTDEVSSKTMESQRSPGL
YFVGEVLDVSGHLGGFNFQWAWASGYAAGQYA*
AnnotationID:1492GeneID:1483
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 07:07:42
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic protein
Cell Localization:()
Synonyms:yhiN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative flavoprotein
Functional Category Confidence Code:5
COGs:COG2081,pfam03486
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO71401.1| (AE016847) putative exported protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 400

 Score =  438 bits (1126), Expect = e-122
 Identities = 217/392 (55%), Positives = 280/392 (71%), Gaps = 2/392 (0%)

>gb|AAL22448.1| (AE008865) putative periplasmic protein [Salmonella typhimurium
           LT2]
          Length = 398

 Score =  436 bits (1122), Expect = e-122
 Identities = 217/392 (55%), Positives = 279/392 (71%), Gaps = 2/392 (0%)






 
Structural Features:
COG2081, Predicted flavoproteins 
CD-Length = 408 residues,  98.8% aligned
Score =  517 bits (1332), Expect = 1e-147
Identities = 214/404 (52%), Positives = 274/404 (67%), Gaps = 13/404 (3%)

pfam03486, HI0933_like, HI0933-like protein.
CD-Length = 350 residues, 100.0% aligned
Score =  440 bits (1134), Expect = 9e-125
Identities = 174/350 (49%), Positives = 223/350 (63%), Gaps = 11/350 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14365




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20114




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33858




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1483_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1483
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2661
                           PA0559_tr
                           translation of PA0559
                           392
                           99.99
                           99.99
                           0
                           2045.0
     

     
     
84101
                           gb|AAG03948.1|AE004492_7
                           (AE004492) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           392
                           99.74
                           99.99
                           0
                           2042.0
     

     
     
84102
                           gb|AAO58436.1|
                           (AE016874) conserved hypothetical protein TIGR00275 [Pseudomonas syringae pv. tomato str. DC3000]
                           392
                           77.80
                           88.52
                           0
                           1663.0
     

     
     
84103
                           gb|AAN70520.1|AE016694_3
                           (AE016792) conserved hypothetical protein TIGR00275 [Pseudomonas putida KT2440]
                           393
                           76.08
                           86.51
                           1
                           1588.0
     

     
     
84104
                           gb|AAM41569.1|
                           (AE012336) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           394
                           58.88
                           73.60
                           3
                           1220.0
     

     






      

          
GC ORFID: 44485How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0559Glimmer Score: 

          
Start: 6428866Stop: 6427688

          
Length: 1179


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0559 translation of PA0559Homolog Bit Score 792.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3689 (ORF: BLASTX 644.0), t_PA0559 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCAAGTACAGATGTGCTGATCGTTGGCGCCGGGGCGGCCGGGCTGATGTGTGCGATGACGGCGGCCGGG 
CGCGGGCGCCGCGTGCGGGTACTCGACCACGCCAACAAGGCCGGCAAGAAGATCCTCATGTCCGGCGGCGGG 
CGCTGCAATTTCACCAACCTGTACACCGAGCCGGCCAACTTCCTTTCGCGCAACCCGCACTTCTGCAAGTCG 
GCGCTGGCCCGCTACACCCAGTGGGACTTCATCGGCCTGGTGGCCAAGCACCAGGTGCCGTACCACGAGAAG 
AAACTCGGCCAGCTGTTCTGCGACAACAAGTCCAGCGACATCCTCGAGATGCTGCTGCGCGAATGCGCCGAG 
GCCGGAGCGGAAATCCTGCTGGACACCTCGATCGAAGAGATCGCCCGCGACGACGCCGGCTACCGCCTGCGT 
ACCAGCGCCGGCGAGATGCGCTGCGAGTCGCTGGTGATCGCCAGCGGCGGCCTGTCGATCCCGACCCTCGGC 
GCCAGCGGTTTCGGCTACCAGGTGGCGCGCCAGTTCGGCCATGAGGTGCTGCCGACCCGCGCCGGGCTGGTG 
CCGTTCACCATCACCGACCAATTGAAGGAGCTGTGCGCCGAGCTTTCCGGCACCTCGGTGGATTGCCGGGTG 
AGCTGCAACGGCCAGGCGTTCCGCGAGAACCTGCTGTTCACCCACCGCGGCCTCAGCGGCCCGGCGATGTTG 
CAGATTTCCTCCTACTGGCAACCGGGCGATACCCTGGAAATCGACCTGCTGCCGGACCACGACGCCAGCGAA 
TGGCTGGCGCAGCAACAGCGCGAGCGTCCCAACAGCGAGCTGAAGACCCTGCTCGCCGAGTTGTTCACCAAG 
AAGCTCGCCGGACTGCTGGCCGACCGCTGGTTCGTCTCCAAGCCGATGAAACAGTACACCCCGACCGAACTG 
GCGGGTATCGCCGGGCAGCTTTCGGCCTGGCGGGTCACGCCCTCGGGCACCGAGGGCTACCGCACCGCGGAA 
GTGACCCTGGGCGGGGTGAGCACCGACGAAGTGTCGTCGAAGACCATGGAGTCGCAGCGCTCGCCGGGGCTG 
TATTTCGTCGGCGAAGTACTGGACGTCAGCGGCCACCTCGGCGGCTTCAACTTCCAGTGGGCCTGGGCCTCG 
GGTTATGCGGCGGGACAGTACGCCTAG