ViewGene
Locus Name:
GeneID:
Location:

GeneID:1479
TrivialName: PA14_05840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05840
PAO1 Ortholog Locus:PA0447
Sequence Length:1182
Protein Length:393
Start: 517179
Stop: 515998
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03836.1|AE004482_3 (AE004482) glutaryl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 393/393 (100%), Positives = 393/393 (100%)
Sequence:
ATGGCCACCAAAGCTAGCTTCAACTGGGAAGATCCCCTGCTGCTGGACCAGCAGCTCACCGAAGAAGAGCGC
ATGGTTCGCGACAGCGCCCAGCAGTTCGCCCAGGACAAGCTGGCCCCGCGCGTGCTCGAAGCCTTCCGCCAC
GAACAGACCGACCCGAAGATCTTCCGCGAGATGGGCGAGACCGGCCTGCTCGGCGCGACCATTCCCGAAGCC
TACGGCGGCAGCGGCCTCAACTACGTCTGCTATGGCCTGATCGCTCGCGAAGTCGAGCGCGTCGACTCCGGC
TATCGCTCGATGATGAGCGTGCAGTCCTCGCTGGTGATGGTGCCAATCCATGAATTCGGCAACGAAGCCACC
CGGCAGAAGTACCTGCCCAAGCTGGCCAGCGGCGAATACATCGGCTGCTTCGGCCTGACCGAGCCGAACCAC
GGTTCCGACCCGGGCTCGATGGTCACCCGGGCGAAGAAGGTCGACGGCGGCTATCGCCTGAGCGGCAGCAAG
ATGTGGATCACCAACAGCCCGATCGCCGACGTCTTCGTGGTCTGGGCCAAGGACGACGAAGGGCAGATCCGC
GGTTTCGTCCTCGAGAAGGGCTGGGAAGGCCTGAGCGCCCCGGCGATCCATGGCAAGGTCGGCCTGCGCGCC
TCGATCACCGGCGAGATCGTGATGGACAACGTGTTCGTTCCGGAAGAGAACGCCTTCCCCGagGTGCGCGGC
CTGCGCGGTCCGTTCACCTGCCTGAACTCGGCGCGCTACGGCATCTCCTGGGGCGCCCTGGGCGCCGCCGAA
TTCTGCTGGCACACCGCCCGCCAGTACGTGCTCGACCGCCAGCAGTTCGGCCGCCCGCTGGCCGCCAACCAA
CTGATCCAGAAGAAGCTGGCCGACATGCAGACCGAGATCACCCTGGCCCTGCAAGGCTGCCTGCGCCTGGGG
CGGATGAAGGACGAAGGCACCGCGGCGGTGGAAATCACCTCGATCATGAAGCGCAACAGCTGCGGCAAGGCC
CTCGACATCGCCCGCCTGGCCCGCGACATGCTGGGCGGCAACGGCATCTCCGACGAGTTCGGCATCGCCCGC
CACCTGGTCAACCTGGAAGTGGTGAACACCTACGAGGGCACCCACGATGTCCACGCGCTGATCCTCGGCCGC
GCGCAGACCGGCATCCAGGCATTCTTCTGA
Translation:
MATKASFNWEDPLLLDQQLTEEERMVRDSAQQFAQDKLAPRVLEAFRHEQTDPKIFREMGETGLLGATIPEA
YGGSGLNYVCYGLIAREVERVDSGYRSMMSVQSSLVMVPIHEFGNEATRQKYLPKLASGEYIGCFGLTEPNH
GSDPGSMVTRAKKVDGGYRLSGSKMWITNSPIADVFVVWAKDDEGQIRGFVLEKGWEGLSAPAIHGKVGLRA
SITGEIVMDNVFVPEENAFPEVRGLRGPFTCLNSARYGISWGALGAAEFCWHTARQYVLDRQQFGRPLAANQ
LIQKKLADMQTEITLALQGCLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGIAR
HLVNLEVVNTYEGTHDVHALILGRAQTGIQAFF*
AnnotationID:1488GeneID:1479
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 13:01:41
Gene Name:gcdH
Confidence Code:2
GeneProduct: glutaryl-CoA dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01151,cd01158,cd00567,cd01156
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:1.3.99.7
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65791.1|AE016205_4 (AE016774) glutaryl-CoA dehydrogenase [Pseudomonas putida KT2440]
          Length = 393

 Score =  747 bits (1928), Expect = 0.0
 Identities = 366/393 (93%), Positives = 379/393 (96%)

>gb|AAO58881.1| (AE016875) acyl-CoA dehydrogenase, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 393

 Score =  730 bits (1885), Expect = 0.0
 Identities = 356/393 (90%), Positives = 377/393 (95%)

>emb|CAD14286.1| (AL646060) PROBABLE GLUTARYL-COA DEHYDROGENASE OXIDOREDUCTASE
           PROTEIN [Ralstonia solanacearum]
          Length = 435

 Score =  684 bits (1766), Expect = 0.0
 Identities = 337/397 (84%), Positives = 362/397 (91%), Gaps = 4/397 (1%)






 
Structural Features:
cd01151, GCD, Glutaryl-CoA dehydrogenase (GCD).
CD-Length = 386 residues, 100.0% aligned
Score =  665 bits (1718), Expect = 0.0 

cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues,  99.2% aligned
Score =  302 bits (775), Expect = 5e-83

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD). 
CD-Length = 369 residues, 100.0% aligned
Score =  296 bits (760), Expect = 3e-81

cd01156, IVD, Isovaleryl-CoA dehydrogenase (IVD)
CD-Length = 376 residues,  98.9% aligned
Score =  269 bits (689), Expect = 4e-73






   
Genomic Context:






   
Comment:


















    ReferenceID:2961




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20106




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33767




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1479_cdd.html


    		




 
URL:

















    ReferenceID:35344




  
Author/Investigator(s):
        Koeller DM, DiGiulio KA, Angeloni SV, Dowler LL, Frerman FE, White RA, Goodman SI.





  
Title:
        Cloning, structure, and chromosome localization of the mouse glutaryl-CoA dehydrogenase gene.




  
PubMed:
        7490088


MedLine:
        




    
Source:
Genomics. 1995 Aug 10;28(3):508-12.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7490088









           
Homologs By Global Alignment 

           

       



     
Gene ID:1479
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2657
                           PA0447_tr
                           translation of PA0447
                           393
                           99.99
                           99.99
                           0
                           2047.0
     

     
     
83920
                           gb|AAG03836.1|AE004482_3
                           (AE004482) glutaryl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           393
                           99.99
                           99.99
                           0
                           2047.0
     

     
     
83921
                           gb|AAN65791.1|AE016205_4
                           (AE016774) glutaryl-CoA dehydrogenase [Pseudomonas putida KT2440]
                           393
                           93.12
                           96.43
                           0
                           1928.0
     

     
     
83922
                           gb|AAO58881.1|
                           (AE016875) acyl-CoA dehydrogenase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           393
                           90.58
                           95.92
                           0
                           1885.0
     

     
     
83924
                           emb|CAE41826.1|
                           (BX640415) glutaryl-CoA dehydrogenase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           397
                           84.38
                           91.68
                           4
                           1755.0
     

     






      

          
GC ORFID: 44481How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0447Glimmer Score: 

          
Start: 6318521Stop: 6317340

          
Length: 1182


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0447 translation of PA0447Homolog Bit Score 793.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4219 (ORF: BLASTX 736.0), t_PA0447 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCACCAAAGCTAGCTTCAACTGGGAAGATCCCCTGCTGCTGGACCAGCAGCTCACCGAAGAAGAGCGC 
ATGGTTCGCGACAGCGCCCAGCAGTTCGCCCAGGACAAGCTGGCCCCGCGCGTGCTCGAAGCCTTCCGCCAC 
GAACAGACCGACCCGAAGATCTTCCGCGAGATGGGCGAGACCGGCCTGCTCGGCGCGACCATTCCCGAAGCC 
TACGGCGGCAGCGGCCTCAACTACGTCTGCTATGGCCTGATCGCTCGCGAAGTCGAGCGCGTCGACTCCGGC 
TATCGCTCGATGATGAGCGTGCAGTCCTCGCTGGTGATGGTGCCAATCCATGAATTCGGCAACGAAGCCACC 
CGGCAGAAGTACCTGCCCAAGCTGGCCAGCGGCGAATACATCGGCTGCTTCGGCCTGACCGAGCCGAACCAC 
GGTTCCGACCCGGGCTCGATGGTCACCCGGGCGAAGAAGGTCGACGGCGGCTATCGCCTGAGCGGCAGCAAG 
ATGTGGATCACCAACAGCCCGATCGCCGACGTCTTCGTGGTCTGGGCCAAGGACGACGAAGGGCAGATCCGC 
GGTTTCGTCCTCGAGAAGGGCTGGGAAGGCCTGAGCGCCCCGGCGATCCATGGCAAGGTCGGCCTGCGCGCC 
TCGATCACCGGCGAGATCGTGATGGACAACGTGTTCGTTCCGGAAGAGAACGCCTTCCCCGagGTGCGCGGC 
CTGCGCGGTCCGTTCACCTGCCTGAACTCGGCGCGCTACGGCATCTCCTGGGGCGCCCTGGGCGCCGCCGAA 
TTCTGCTGGCACACCGCCCGCCAGTACGTGCTCGACCGCCAGCAGTTCGGCCGCCCGCTGGCCGCCAACCAA 
CTGATCCAGAAGAAGCTGGCCGACATGCAGACCGAGATCACCCTGGCCCTGCAAGGCTGCCTGCGCCTGGGG 
CGGATGAAGGACGAAGGCACCGCGGCGGTGGAAATCACCTCGATCATGAAGCGCAACAGCTGCGGCAAGGCC 
CTCGACATCGCCCGCCTGGCCCGCGACATGCTGGGCGGCAACGGCATCTCCGACGAGTTCGGCATCGCCCGC 
CACCTGGTCAACCTGGAAGTGGTGAACACCTACGAGGGCACCCACGATGTCCACGCGCTGATCCTCGGCCGC 
GCGCAGACCGGCATCCAGGCATTCTTCTGA