ViewGene
Locus Name:
GeneID:
Location:

GeneID:142
TrivialName: PA14_58560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58560
PAO1 Ortholog Locus:PA4513
Sequence Length:2553
Protein Length:850
Start: 5217106
Stop: 5214554
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07901.1|AE004865_2 (AE004865) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 847/850 (99%), Positives = 849/850 (99%)
Sequence:
GTGAAGAAAGTCTGGTTCCAGTTGCATTGGTTCTTCGGCATCAGCGCCGGCCTGGTGCTGGCGCTGATGGGC
GTCACCGGAGCGACCCTGTCGTTCCAGGACGAACTGATGCGCGCGCTCAACCCTGACGTGCTGGTGGTGCAG
AAGCGCCCCGAGGGCGTGCTGCCGTTGGACGAACTGGTGCGCCGTATCGAAGGCGCCGAGCCGGGGCGGAAA
GTGGCCTTCGTCTGGGTCGAGATGGACAGCGACAAGGCCGGGCGGATCTTCTACACCCCGCCGCCGGGACAG
CGCCGCGGCGAGTCGCGCTGGATCGATCCCTACACCGGGGCTTTCGTCGGCGAGCCGCGCGGGGAGGGTTTC
TTCAACCTGATGATGCAACTGCACCGTTTCCTCGCCATGGGCGAGTACGGCAAGCAGGTCACCGCCGCCTGC
ACCCTGATCCTGATCTTCTTCTGCCTGTCCGGTCTCTACCTGCGCTGGCCGCGCAAGGTTTTCGACTGGCGC
GCCTGGCTGACCCTCGACTGGTCGCGCAAGGGGCGCAGTTTCAACTGGGACCTGCATGCCGTGGCCGGCACC
TGGTGCCTGGCGCTCTACCTGCTGGCTGCGCTGACCGGCCTGTACTGGTCCTACGAGTGGTACCGCAACGGC
CTGTTCAAACTGCTCGACGACGCGCCCGCCGGCCAGCAGGCGCAGCGCGGCAAGCCGGGCGGACGTGGCGAG
CGCCCGGCCGATGCGGCTCCGCTGGTGGTCGACTACGCGGCGGTATGGAACAGCATCCGCCAGGCCGGCGGC
GACCGCTTGCAGGCCTACAACCTGCGCCTGCCACCGGCGGGCGGCCAGCCGGCGACAGTGTTCTATCGCCTG
ACCGACGCGCCGCACGAGCGTGCCTTCAACACCCTGACCCTGGACCCGGCCAACGGCCAGGTGAAAAGCGAC
CAGCGCTATAGCGACCGTTCTTTCGGCAGCCAGTTGCTGGCCAGCGTCTATGCATTGCACGTAGGCAGCTAT
TTCGGCATGGCCGGACGCATCCTGATGATGCTCGCCAGCCTGGCGATGCCGCTGTTCTTCATCACCGGCTGG
CTGCTCTACCTCGACCGCCGGCGCAAGAAACGCGCGGTACGGGCGAGCCGCGCCGACCTGGGCGGCAGCGCC
GGCGCCAGCGGCGAGCCCTGGTTGATCGGCTACGCCAGCCAGAGCGGTTTTGCCGAGCAACTGGCTTGGCAG
AGCGCCGGCCAGTTGCAGGCGGCCGGGTTGCCGGTGCGGGTCGAATCGCTGGCGCGCCTGGATGCCGGGCAA
CTCGCCGAGGCGCGCAAGGCGCTGTTCGTGGTCAGCACCTTCGGCGACGGTGAGGCGCCGGACAGCGCCCGC
GGCTTCGAACGCAAGGTGCTTGGCCAGGCCGCCAGCCTCGATGGCCTGAGCTACGCCCTGCTGGCCTTGGGA
GATCGCCAGTACGAGCAGTTCTGCGGCTTCGCCCGGCGCATGCAGGGCTGGTTGCAGGGGCAGGGCGCGCGG
AGCCTGTTCGCCCCAGTGGAGGTCGATGATGGCGACGCCGCGGCCCTGCGCCAATGGCAGGAAAGCCTGGCC
GAGGTGACCGGCGGTGCCGCCCCGGCGGCCTGGGAAGCGCCGGCTTTCGAGGTCTGGTCGCTAGCGCGGCGG
GAGTGCCTGAACCCTGGCAGCCAGGGCGAGTCGACCTGGCTGCTGGACCTGCGTGCGCCGGCCGACAGCGCC
ATCCAATGGCGCGCCGGCGATCTGCTGGAGATCGTTCCGCACCAGGCGCCCGCGCGCATCCGCGAATGGCTG
CAGCGGCATCACCTGGACGGCCAGGCGCGGGTGGCGGTCGAGGGCGTCGAGCAGAGCCTGGAGCAGGCCCTG
GCCGGGCGCCTGCTGCCGGATTCTTTCGAACACCTGGTCGGCTTGCACCCGCAGGCGCTGCTGGATGCGCTG
ATTCCGCTTTCCGTGCGCCAGTACTCCATCGCGTCGCTGCAGAGCGATGGCGACCTGCAACTGATCGTACGC
CAGGAGCAGCATGCCGACGGCAGCCTGGGCATCTGCTCCGGCTGGCTCACCGAGTACCTGCCGCTCGGCGCC
GCGCTGACCCTGCGCCTGCGCCGCAACGCGGGTTTCCACCTGCCGGAGGATGACGTGCCGCTGATTCTCATC
GGCAACGGCACCGGGCTCGCCGGCCTGCGCAGCCTGTTGCGCGCCAGCATTGCCGCCGGGCGCAAGCGCAAC
TGGCTGCTGTTCGGCGAACGCAATTTCGCCCACGACTACTACTGTCGTGCGGAGTTGGAGCAGGCCCTGGCC
AGGGGCGAGCTGCAACGCCTGGACCTGGCCTTCTCCCGCGACCAGGCGGAGAAGATCTATGTCCAGGACCGC
CTGCATGAAGCGGCGGATGAACTGCGGCGCTGGATCGACGAGGGCGCGGCCTTGTACGTCTGCGGCAGCCTG
CAGGGCATGGCCGGTGGTGTCGACCGGGTGCTGCGCGAAGTGCTCGGTGAGGAGGCCTTGCAACGCCTGGCC
GACGAAGGACGTTACCGGCGCGACGTGTACTGA
Translation:
MKKVWFQLHWFFGISAGLVLALMGVTGATLSFQDELMRALNPDVLVVQKRPEGVLPLDELVRRIEGAEPGRK
VAFVWVEMDSDKAGRIFYTPPPGQRRGESRWIDPYTGAFVGEPRGEGFFNLMMQLHRFLAMGEYGKQVTAAC
TLILIFFCLSGLYLRWPRKVFDWRAWLTLDWSRKGRSFNWDLHAVAGTWCLALYLLAALTGLYWSYEWYRNG
LFKLLDDAPAGQQAQRGKPGGRGERPADAAPLVVDYAAVWNSIRQAGGDRLQAYNLRLPPAGGQPATVFYRL
TDAPHERAFNTLTLDPANGQVKSDQRYSDRSFGSQLLASVYALHVGSYFGMAGRILMMLASLAMPLFFITGW
LLYLDRRRKKRAVRASRADLGGSAGASGEPWLIGYASQSGFAEQLAWQSAGQLQAAGLPVRVESLARLDAGQ
LAEARKALFVVSTFGDGEAPDSARGFERKVLGQAASLDGLSYALLALGDRQYEQFCGFARRMQGWLQGQGAR
SLFAPVEVDDGDAAALRQWQESLAEVTGGAAPAAWEAPAFEVWSLARRECLNPGSQGESTWLLDLRAPADSA
IQWRAGDLLEIVPHQAPARIREWLQRHHLDGQARVAVEGVEQSLEQALAGRLLPDSFEHLVGLHPQALLDAL
IPLSVRQYSIASLQSDGDLQLIVRQEQHADGSLGICSGWLTEYLPLGAALTLRLRRNAGFHLPEDDVPLILI
GNGTGLAGLRSLLRASIAAGRKRNWLLFGERNFAHDYYCRAELEQALARGELQRLDLAFSRDQAEKIYVQDR
LHEAADELRRWIDEGAALYVCGSLQGMAGGVDRVLREVLGEEALQRLADEGRYRRDVY*
AnnotationID:152GeneID:142
AnnotatorUID: danlee
Modification Date/Time: 2006-03-29 14:02:58
Gene Name:
Confidence Code:3
GeneProduct:probable oxidoreductase
Cell Localization:()
Synonyms:PA4513, piuB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:iron-uptake factor
Functional Category Confidence Code:5
COGs:COG0369,COG3182
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC06216.1| (AF051690) iron-uptake factor [Pseudomonas aeruginosa]
          Length = 814

 Score = 1638 bits (4241), Expect = 0.0
 Identities = 811/814 (99%), Positives = 813/814 (99%)

>gb|AAN66485.1|AE016277_4 (AE016777) sulfite reductase, flavoprotein component, putative
           [Pseudomonas putida KT2440]
          Length = 849

 Score = 1114 bits (2881), Expect = 0.0
 Identities = 554/854 (64%), Positives = 665/854 (77%), Gaps = 9/854 (1%)








 
Structural Features:
COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) 
[Inorganic ion transport and metabolism]
CD-Length = 587 residues, 100.0% aligned
Score =  436 bits (1122), Expect = 1e-122
Identities = 198/588 (33%), Positives = 271/588 (46%), Gaps = 80/588 (13%)

COG3182, PiuB, Uncharacterized iron-regulated membrane protein 
CD-Length = 442 residues,  99.1% aligned
Score =  298 bits (764), Expect = 4e-81
Identities = 146/442 (33%), Positives = 203/442 (45%), Gaps = 35/442 (7%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14065




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17429




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31559




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:142_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:142
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
259
                           PA4513_tr
                           translation of PA4513
                           850
                           99.64
                           99.88
                           0
                           4429.0
     

     
     
17600
                           gb|AAG07901.1|AE004865_2
                           (AE004865) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           850
                           99.52
                           99.88
                           0
                           4426.0
     

     
     
17601
                           gb|AAC06216.1|
                           (AF051690) iron-uptake factor [Pseudomonas aeruginosa]
                           850
                           95.41
                           95.64
                           36
                           4241.0
     

     
     
17602
                           gb|AAN66485.1|AE016277_4
                           (AE016777) sulfite reductase, flavoprotein component, putative [Pseudomonas putida KT2440]
                           854
                           64.98
                           77.98
                           9
                           2891.0
     

     
     
17603
                           gb|AAO58015.1|
                           (AE016872) iron-uptake factor [Pseudomonas syringae pv. tomato str. DC3000]
                           850
                           60.11
                           74.11
                           28
                           2665.0
     

     






      

          
GC ORFID: 43144How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4513Glimmer Score: 

          
Start: 4480785Stop: 4478233

          
Length: 2553


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4513 translation of PA4513Homolog Bit Score 1710.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5430 (ORF: BLASTX 1076.0), t_PA4513 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAGAAAGTCTGGTTCCAGTTGCATTGGTTCTTCGGCATCAGCGCCGGCCTGGTGCTGGCGCTGATGGGC 
GTCACCGGAGCGACCCTGTCGTTCCAGGACGAACTGATGCGCGCGCTCAACCCTGACGTGCTGGTGGTGCAG 
AAGCGCCCCGAGGGCGTGCTGCCGTTGGACGAACTGGTGCGCCGTATCGAAGGCGCCGAGCCGGGGCGGAAA 
GTGGCCTTCGTCTGGGTCGAGATGGACAGCGACAAGGCCGGGCGGATCTTCTACACCCCGCCGCCGGGACAG 
CGCCGCGGCGAGTCGCGCTGGATCGATCCCTACACCGGGGCTTTCGTCGGCGAGCCGCGCGGGGAGGGTTTC 
TTCAACCTGATGATGCAACTGCACCGTTTCCTCGCCATGGGCGAGTACGGCAAGCAGGTCACCGCCGCCTGC 
ACCCTGATCCTGATCTTCTTCTGCCTGTCCGGTCTCTACCTGCGCTGGCCGCGCAAGGTTTTCGACTGGCGC 
GCCTGGCTGACCCTCGACTGGTCGCGCAAGGGGCGCAGTTTCAACTGGGACCTGCATGCCGTGGCCGGCACC 
TGGTGCCTGGCGCTCTACCTGCTGGCTGCGCTGACCGGCCTGTACTGGTCCTACGAGTGGTACCGCAACGGC 
CTGTTCAAACTGCTCGACGACGCGCCCGCCGGCCAGCAGGCGCAGCGCGGCAAGCCGGGCGGACGTGGCGAG 
CGCCCGGCCGATGCGGCTCCGCTGGTGGTCGACTACGCGGCGGTATGGAACAGCATCCGCCAGGCCGGCGGC 
GACCGCTTGCAGGCCTACAACCTGCGCCTGCCACCGGCGGGCGGCCAGCCGGCGACAGTGTTCTATCGCCTG 
ACCGACGCGCCGCACGAGCGTGCCTTCAACACCCTGACCCTGGACCCGGCCAACGGCCAGGTGAAAAGCGAC 
CAGCGCTATAGCGACCGTTCTTTCGGCAGCCAGTTGCTGGCCAGCGTCTATGCATTGCACGTAGGCAGCTAT 
TTCGGCATGGCCGGACGCATCCTGATGATGCTCGCCAGCCTGGCGATGCCGCTGTTCTTCATCACCGGCTGG 
CTGCTCTACCTCGACCGCCGGCGCAAGAAACGCGCGGTACGGGCGAGCCGCGCCGACCTGGGCGGCAGCGCC 
GGCGCCAGCGGCGAGCCCTGGTTGATCGGCTACGCCAGCCAGAGCGGTTTTGCCGAGCAACTGGCTTGGCAG 
AGCGCCGGCCAGTTGCAGGCGGCCGGGTTGCCGGTGCGGGTCGAATCGCTGGCGCGCCTGGATGCCGGGCAA 
CTCGCCGAGGCGCGCAAGGCGCTGTTCGTGGTCAGCACCTTCGGCGACGGTGAGGCGCCGGACAGCGCCCGC 
GGCTTCGAACGCAAGGTGCTTGGCCAGGCCGCCAGCCTCGATGGCCTGAGCTACGCCCTGCTGGCCTTGGGA 
GATCGCCAGTACGAGCAGTTCTGCGGCTTCGCCCGGCGCATGCAGGGCTGGTTGCAGGGGCAGGGCGCGCGG 
AGCCTGTTCGCCCCAGTGGAGGTCGATGATGGCGACGCCGCGGCCCTGCGCCAATGGCAGGAAAGCCTGGCC 
GAGGTGACCGGCGGTGCCGCCCCGGCGGCCTGGGAAGCGCCGGCTTTCGAGGTCTGGTCGCTAGCGCGGCGG 
GAGTGCCTGAACCCTGGCAGCCAGGGCGAGTCGACCTGGCTGCTGGACCTGCGTGCGCCGGCCGACAGCGCC 
ATCCAATGGCGCGCCGGCGATCTGCTGGAGATCGTTCCGCACCAGGCGCCCGCGCGCATCCGCGAATGGCTG 
CAGCGGCATCACCTGGACGGCCAGGCGCGGGTGGCGGTCGAGGGCGTCGAGCAGAGCCTGGAGCAGGCCCTG 
GCCGGGCGCCTGCTGCCGGATTCTTTCGAACACCTGGTCGGCTTGCACCCGCAGGCGCTGCTGGATGCGCTG 
ATTCCGCTTTCCGTGCGCCAGTACTCCATCGCGTCGCTGCAGAGCGATGGCGACCTGCAACTGATCGTACGC 
CAGGAGCAGCATGCCGACGGCAGCCTGGGCATCTGCTCCGGCTGGCTCACCGAGTACCTGCCGCTCGGCGCC 
GCGCTGACCCTGCGCCTGCGCCGCAACGCGGGTTTCCACCTGCCGGAGGATGACGTGCCGCTGATTCTCATC 
GGCAACGGCACCGGGCTCGCCGGCCTGCGCAGCCTGTTGCGCGCCAGCATTGCCGCCGGGCGCAAGCGCAAC 
TGGCTGCTGTTCGGCGAACGCAATTTCGCCCACGACTACTACTGTCGTGCGGAGTTGGAGCAGGCCCTGGCC 
AGGGGCGAGCTGCAACGCCTGGACCTGGCCTTCTCCCGCGACCAGGCGGAGAAGATCTATGTCCAGGACCGC 
CTGCATGAAGCGGCGGATGAACTGCGGCGCTGGATCGACGAGGGCGCGGCCTTGTACGTCTGCGGCAGCCTG 
CAGGGCATGGCCGGTGGTGTCGACCGGGTGCTGCGCGAAGTGCTCGGTGAGGAGGCCTTGCAACGCCTGGCC 
GACGAAGGACGTTACCGGCGCGACGTGTACTGA