ViewGene
Locus Name:
GeneID:
Location:

GeneID:1393
TrivialName: PA14_68780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68780
PAO1 Ortholog Locus:PA5207
Sequence Length:1269
Protein Length:422
Start: 6135200
Stop: 6133932
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08592.1|AE004933_8 (AE004933) probable phosphate transporter [Pseudomonas aeruginosa PAO1]
Identities = 422/422 (100%), Positives = 422/422 (100%)
Sequence:
ATGTCCCTGATCGCCGACCACGGCTTCGCCTTCCTCGTACTCGCCTGCCTGTTCGGTTTCTTCATGGCCTGG
GGCGTCGGCGCCAACGACGTCGCCAACGCCATGGGCACCTCGGTGGGCTCACGGGCGCTGACCATCCGCCAG
GCGATCCTGGTGGCGATGGTCTTCGAGTTCTGCGGTGCCTACTTCGCCGGCGGCGAGGTCACCGAAACGATC
AGGAGCGGCATCGTCGATCCGCAGTACATGACCCCCGACCTGCTGGTCTTCGGCATGCTCTCGGCCTTGCTG
GCCGCCGGGGTCTGGCTGTTGCTGGCGACGATCAAGGGCTGGCCGGTGTCGACCACCCACTCCATCGTCGGC
GCGATCATCGGCTTCGCCTCGGTCGGTGTCTCGGTGCACGCGGTGCACTGGGGCGCGATCGGCCCGATCGTC
GCCAGTTGGGTGGTGACGCCGGTGCTGTCCGGGCTGCTCGCCTTCGCCCTGTTCAGGAGCGTGCAGTGGCTG
GTACTGCATGCCGAGGACCCGTTCCGCAGCGCGCGCCGCTACGTGCCGCTGTACATGTTCCTGGCGGGCTTC
ATGGTCGCGCTGATGACCGTCGGCAAGGGCCTGAAGCATGTCGGCCTGGAGCTTTCCGGCCTCCAGACGCTG
GGTCTGGCGTTGCTCGCCGGCGGCCTGGTGATGGGCCTGGGTATCGTCCTGCTGTTGCGTATCCGACCCACT
GGCGGAGCCGATCCGCGTGGCGGCTTCGCCAGCGTCGAGCGGGTCTTCGCGGTGCTGATGATCTTCACCGCC
TGCTCCATGGCTTTCGCCCATGGTGCCAACGACGTGGCCAACGCCATCGGCCCGGTGGCGGCGGTCGTCGCG
GTGGTCCAGGCCGGCGGCGACCTGGATCTGGTGAGCCGTTCGCCGGTGCCGTCCTGGGTACTGCTGCTGGGC
GCGGTGGGCATCGTCATCGGCCTGGCTACCTATGGCTACCGGGTGATCGCCACCATCGGCCGGGAGATCACC
GAGCTGACCCCCAGCCGCGGCTTCGCCGCCGAGCTGGCGACCGCCTCCACGGTGGTTGGCGCCTCGGCCATC
GGCCTGCCGGTGTCCACTACCCATACCCTGGTCGGCGCGGTGCTCGGCATCGGCATGGCGCGCGGCATCGGC
GCGCTCAACCTGCGGGTGATCGGCTCGATCTTCCTGTCCTGGGTAGTGACCCTGCCGGCCGGCGCGGTGCTG
GCGATCCTGTTCTTCCTGGTCCTGCGCGCGCTGTTCGGTGCCTGA
Translation:
MSLIADHGFAFLVLACLFGFFMAWGVGANDVANAMGTSVGSRALTIRQAILVAMVFEFCGAYFAGGEVTETI
RSGIVDPQYMTPDLLVFGMLSALLAAGVWLLLATIKGWPVSTTHSIVGAIIGFASVGVSVHAVHWGAIGPIV
ASWVVTPVLSGLLAFALFRSVQWLVLHAEDPFRSARRYVPLYMFLAGFMVALMTVGKGLKHVGLELSGLQTL
GLALLAGGLVMGLGIVLLLRIRPTGGADPRGGFASVERVFAVLMIFTACSMAFAHGANDVANAIGPVAAVVA
VVQAGGDLDLVSRSPVPSWVLLLGAVGIVIGLATYGYRVIATIGREITELTPSRGFAAELATASTVVGASAI
GLPVSTTHTLVGAVLGIGMARGIGALNLRVIGSIFLSWVVTLPAGAVLAILFFLVLRALFGA*
AnnotationID:1402GeneID:1393
AnnotatorUID: diggins
Modification Date/Time: 2006-01-20 06:06:46
Gene Name:
Confidence Code:3
GeneProduct:probable phosphate transporter
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01384
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN56752.1|AE015810_11 (AE015810) phosphate transporter, putative [Shewanella oneidensis
           MR-1]
          Length = 424

 Score =  507 bits (1306), Expect = e-143
 Identities = 253/421 (60%), Positives = 331/421 (78%), Gaps = 4/421 (0%)

>gb|AAO89584.1| (AE016960) phosphate transporter family protein [Coxiella burnetii
           RSA 493]
          Length = 417

 Score =  493 bits (1269), Expect = e-139
 Identities = 241/417 (57%), Positives = 321/417 (76%), Gaps = 4/417 (0%)








 
Structural Features:
pfam01384, PHO4, Phosphate transporter family.
CD-Length = 379 residues, 100.0% aligned
Score =  308 bits (789), Expect = 1e-84
Identities = 187/386 (48%), Positives = 256/386 (66%), Gaps = 9/386 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2789




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17033




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA5207_CDS.cgi


    		




 
URL:

















    ReferenceID:19934




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1393
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2541
                           PA5207_tr
                           translation of PA5207
                           422
                           99.99
                           99.99
                           0
                           2107.0
     

     
     
80163
                           gb|AAG08592.1|AE004933_8
                           (AE004933) probable phosphate transporter [Pseudomonas aeruginosa PAO1]
                           422
                           99.99
                           99.99
                           0
                           2107.0
     

     
     
80164
                           gb|AAN56752.1|AE015810_11
                           (AE015810) phosphate transporter, putative [Shewanella oneidensis MR-1]
                           427
                           59.25
                           77.51
                           8
                           1310.0
     

     
     
80166
                           gb|AAO09133.1|AE016799_31
                           (AE016799) Phosphate/sulphate permease [Vibrio vulnificus CMCP6]
                           424
                           57.54
                           76.17
                           7
                           1259.0
     

     
     
80167
                           dbj|BAC93338.1|
                           (AP005332) pho4 family protein [Vibrio vulnificus YJ016]
                           424
                           57.54
                           76.17
                           7
                           1259.0
     

     






      

          
GC ORFID: 44395How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5207Glimmer Score: 

          
Start: 5398886Stop: 5397618

          
Length: 1269


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5207 translation of PA5207Homolog Bit Score 816.0

          
Other Homologs:  t_PA5207 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCTGATCGCCGACCACGGCTTCGCCTTCCTCGTACTCGCCTGCCTGTTCGGTTTCTTCATGGCCTGG 
GGCGTCGGCGCCAACGACGTCGCCAACGCCATGGGCACCTCGGTGGGCTCACGGGCGCTGACCATCCGCCAG 
GCGATCCTGGTGGCGATGGTCTTCGAGTTCTGCGGTGCCTACTTCGCCGGCGGCGAGGTCACCGAAACGATC 
AGGAGCGGCATCGTCGATCCGCAGTACATGACCCCCGACCTGCTGGTCTTCGGCATGCTCTCGGCCTTGCTG 
GCCGCCGGGGTCTGGCTGTTGCTGGCGACGATCAAGGGCTGGCCGGTGTCGACCACCCACTCCATCGTCGGC 
GCGATCATCGGCTTCGCCTCGGTCGGTGTCTCGGTGCACGCGGTGCACTGGGGCGCGATCGGCCCGATCGTC 
GCCAGTTGGGTGGTGACGCCGGTGCTGTCCGGGCTGCTCGCCTTCGCCCTGTTCAGGAGCGTGCAGTGGCTG 
GTACTGCATGCCGAGGACCCGTTCCGCAGCGCGCGCCGCTACGTGCCGCTGTACATGTTCCTGGCGGGCTTC 
ATGGTCGCGCTGATGACCGTCGGCAAGGGCCTGAAGCATGTCGGCCTGGAGCTTTCCGGCCTCCAGACGCTG 
GGTCTGGCGTTGCTCGCCGGCGGCCTGGTGATGGGCCTGGGTATCGTCCTGCTGTTGCGTATCCGACCCACT 
GGCGGAGCCGATCCGCGTGGCGGCTTCGCCAGCGTCGAGCGGGTCTTCGCGGTGCTGATGATCTTCACCGCC 
TGCTCCATGGCTTTCGCCCATGGTGCCAACGACGTGGCCAACGCCATCGGCCCGGTGGCGGCGGTCGTCGCG 
GTGGTCCAGGCCGGCGGCGACCTGGATCTGGTGAGCCGTTCGCCGGTGCCGTCCTGGGTACTGCTGCTGGGC 
GCGGTGGGCATCGTCATCGGCCTGGCTACCTATGGCTACCGGGTGATCGCCACCATCGGCCGGGAGATCACC 
GAGCTGACCCCCAGCCGCGGCTTCGCCGCCGAGCTGGCGACCGCCTCCACGGTGGTTGGCGCCTCGGCCATC 
GGCCTGCCGGTGTCCACTACCCATACCCTGGTCGGCGCGGTGCTCGGCATCGGCATGGCGCGCGGCATCGGC 
GCGCTCAACCTGCGGGTGATCGGCTCGATCTTCCTGTCCTGGGTAGTGACCCTGCCGGCCGGCGCGGTGCTG 
GCGATCCTGTTCTTCCTGGTCCTGCGCGCGCTGTTCGGTGCCTGA