ViewGene
Locus Name:
GeneID:
Location:

GeneID:1388
TrivialName: PA14_37260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37260
PAO1 Ortholog Locus:PA2113
Sequence Length:1230
Protein Length:409
Start: 3318312
Stop: 3319541
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05501.1|AE004638_11 (AE004638) probable porin [Pseudomonas aeruginosa PAO1]
Identities = 407/409 (99%), Positives = 407/409 (99%)
Sequence:
ATGCATCCCACTCCCCGCCTGGCTGCCGCGCTGCTCGCCGGCAGCGGGCTGGGCTGGCCGCTGCTCGCCCAG
GCCGACCTGGTCGAGGACAGCCACGCCAGCCTCGAACTGCGCAACTTCTACTTCAACCGCGACTTCCGCCAG
AGCGGCGCGCGCGACAACGCCGACGAATGGGCGCAGGGCTTCCTCCTGCGCCTGGAGTCCGGCTTCAGCGAA
GGCACCGTCGGCTTCGGCGTCGACGCCATCGGCCTGCTCGGCCTCAAGCTCGACTCCGGCGGCGGCAGCGGC
GGAACCGGGCTGCTGCCGGCCGACGGCTCCGCCGGGGGTTCCCAGGACGACTACGCCAAGCTCGGCCTGACC
GCCAAGGCGCGGGTCTCCAACAGCCTGCTCAAGGTCGGCGCGCTGCACTTCAAGAGCCCGCTGGTCTCGGCC
AACGACACCCGCCTGCTGCCGGAACTGTTCCGCGGCGCGCTGCTCGACGTGCAGGAGATCGACGGCCTGACC
CTGCGCGGCGCGCACCTGGACCGCAACAAGCTGAACAGCTCCAGCGACTACCAGGTGTTCAGCGCCAACCGC
ATCGGCGGGCGCAGCGATGCCTTCGACTTCGCCGGCGGCGACTATCGCCTGACCCCGGCGCTGACCGCCAGC
CTGCACCAGGGTCGGCTCAAGGACATCTACCGACAGACCTTCGCCGGCCTGGTACACACCCTCGACCTCGGC
GGACAGCGCTCGCTCAAGAGCGACCTGCGCTTCGCCCGGGCCAGCGAGGACGGCGGCTTCCGCGAACTGGAC
AACCGCGCCTTCGGCGCCCTCTTCAGCCTGCGCCTGGGCGCCCACGCGGTGGCCGCCGGCTACCAGCGGATC
AGCGGCGACGATCCCTATCCCTACATCGCCGGCAGCGACCCGTACCTGGTCAACTTCATCCAGATCGGCGAC
TTCGGCAACGTCGACGAGCGCTCCTGGCAACTGCGCTACGACTACGATTTCGGCGCGCTCGGCCTGCCCGGC
CTGAGCTTCATGAGCCGCTACGTCTCCGGCGACAACGTCGCCCGCGGCGCGGCCAACGACGGCAAGGAATGG
GAACGCAACACCGACCTCGGCTACGTGGTGCAGAGCGGGCCGCTGAAGAACCTCGGAGTGAAATGGCGCAAC
GCCACGGTGCGTTCGAATTTCGCCAACGACCTCGACGAAAACCGCCTGATCCTCAGCTACAGCCTGGCGCTG
TGGTGA
Translation:
MHPTPRLAAALLAGSGLGWPLLAQADLVEDSHASLELRNFYFNRDFRQSGARDNADEWAQGFLLRLESGFSE
GTVGFGVDAIGLLGLKLDSGGGSGGTGLLPADGSAGGSQDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSA
NDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRIGGRSDAFDFAGGDYRLTPALTAS
LHQGRLKDIYRQTFAGLVHTLDLGGQRSLKSDLRFARASEDGGFRELDNRAFGALFSLRLGAHAVAAGYQRI
SGDDPYPYIAGSDPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARGAANDGKEW
ERNTDLGYVVQSGPLKNLGVKWRNATVRSNFANDLDENRLILSYSLALW*
AnnotationID:1397GeneID:1388
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 08:08:46
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane porin
Cell Localization:()
Synonyms:opdO
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03573
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67041.1|AE016333_2 (AE016779) porin, putative [Pseudomonas putida KT2440]
          Length = 429

 Score =  394 bits (1012), Expect = e-109
 Identities = 205/415 (49%), Positives = 275/415 (66%), Gaps = 14/415 (3%)

>gb|AAN68878.1|AE016519_11 (AE016786) phenylacetic acid-specific porin [Pseudomonas putida
           KT2440]
          Length = 417

 Score =  370 bits (951), Expect = e-102
 Identities = 201/414 (48%), Positives = 259/414 (62%), Gaps = 9/414 (2%)








 
Structural Features:
pfam03573, OprD, outer membrane porin, OprD family.
CD-Length = 449 residues,  98.0% aligned
Score =  276 bits (707), Expect = 3e-75
Identities = 162/441 (36%), Positives = 223/441 (50%), Gaps = 58/441 (13%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2779




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19924




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32604




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1388_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1388
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2526
                           PA2113_tr
                           translation of PA2113
                           409
                           99.51
                           99.51
                           0
                           2108.0
     

     
     
80030
                           gb|AAG05501.1|AE004638_11
                           (AE004638) probable porin [Pseudomonas aeruginosa PAO1]
                           409
                           99.51
                           99.51
                           0
                           2108.0
     

     
     
2527
                           PA3038_tr
                           translation of PA3038
                           422
                           55.21
                           69.90
                           14
                           1203.0
     

     
     
80031
                           gb|AAG06426.1|AE004728_12
                           (AE004728) probable porin [Pseudomonas aeruginosa PAO1]
                           422
                           55.21
                           69.90
                           14
                           1203.0
     

     
     
80032
                           gb|AAG04414.1|AE004535_1
                           (AE004535) probable porin [Pseudomonas aeruginosa PAO1]
                           424
                           54.71
                           69.10
                           23
                           1141.0
     

     






      

          
GC ORFID: 44390How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2113Glimmer Score: 

          
Start: 1635602Stop: 1634373

          
Length: 1230


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2113 translation of PA2113Homolog Bit Score 816.0

          
Other Homologs:  t_PA3038 (ORF: BLASTX 464.0), t_PA1025 (ORF: BLASTX 437.0), t_PA4137 (ORF: BLASTX 375.0), t_PA2213 (ORF: BLASTX 370.0), t_PA3588 (ORF: BLASTX 362.0), t_PA4179 (ORF: BLASTX 318.0), t_PA0291 (ORF: BLASTX 312.0), psyr_15may02_Scaffold1_revised_gene342 (ORF: BLASTX 309.0), psyr_15may02_Scaffold3_revised_gene5124 (ORF: BLASTX 302.0), t_PA4898 (ORF: BLASTX 298.0), t_PA0240 (ORF: BLASTX 298.0), t_PA2113 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATCCCACTCCCCGCCTGGCTGCCGCGCTGCTCGCCGGCAGCGGGCTGGGCTGGCCGCTGCTCGCCCAG 
GCCGACCTGGTCGAGGACAGCCACGCCAGCCTCGAACTGCGCAACTTCTACTTCAACCGCGACTTCCGCCAG 
AGCGGCGCGCGCGACAACGCCGACGAATGGGCGCAGGGCTTCCTCCTGCGCCTGGAGTCCGGCTTCAGCGAA 
GGCACCGTCGGCTTCGGCGTCGACGCCATCGGCCTGCTCGGCCTCAAGCTCGACTCCGGCGGCGGCAGCGGC 
GGAACCGGGCTGCTGCCGGCCGACGGCTCCGCCGGGGGTTCCCAGGACGACTACGCCAAGCTCGGCCTGACC 
GCCAAGGCGCGGGTCTCCAACAGCCTGCTCAAGGTCGGCGCGCTGCACTTCAAGAGCCCGCTGGTCTCGGCC 
AACGACACCCGCCTGCTGCCGGAACTGTTCCGCGGCGCGCTGCTCGACGTGCAGGAGATCGACGGCCTGACC 
CTGCGCGGCGCGCACCTGGACCGCAACAAGCTGAACAGCTCCAGCGACTACCAGGTGTTCAGCGCCAACCGC 
ATCGGCGGGCGCAGCGATGCCTTCGACTTCGCCGGCGGCGACTATCGCCTGACCCCGGCGCTGACCGCCAGC 
CTGCACCAGGGTCGGCTCAAGGACATCTACCGACAGACCTTCGCCGGCCTGGTACACACCCTCGACCTCGGC 
GGACAGCGCTCGCTCAAGAGCGACCTGCGCTTCGCCCGGGCCAGCGAGGACGGCGGCTTCCGCGAACTGGAC 
AACCGCGCCTTCGGCGCCCTCTTCAGCCTGCGCCTGGGCGCCCACGCGGTGGCCGCCGGCTACCAGCGGATC 
AGCGGCGACGATCCCTATCCCTACATCGCCGGCAGCGACCCGTACCTGGTCAACTTCATCCAGATCGGCGAC 
TTCGGCAACGTCGACGAGCGCTCCTGGCAACTGCGCTACGACTACGATTTCGGCGCGCTCGGCCTGCCCGGC 
CTGAGCTTCATGAGCCGCTACGTCTCCGGCGACAACGTCGCCCGCGGCGCGGCCAACGACGGCAAGGAATGG 
GAACGCAACACCGACCTCGGCTACGTGGTGCAGAGCGGGCCGCTGAAGAACCTCGGAGTGAAATGGCGCAAC 
GCCACGGTGCGTTCGAATTTCGCCAACGACCTCGACGAAAACCGCCTGATCCTCAGCTACAGCCTGGCGCTG 
TGGTGA