ViewGene

Locus Name:
GeneID:
Location:

GeneID: 138

TrivialName: PA14_28890

AnnotatorUID: danlee

Modification Date/Time: 2006-06-28 15:03:35

LocusName: PA14_28890

PAO1 Ortholog Locus: PA2728

Sequence Length: 2661

Protein Length: 886

Start: 2496599

Stop: 2493939

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Fused with PA14_28900 to create PA14_28895. Homology: gb|AAG06116.1|AE004700_12 (AE004700) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 877/886 (98%), Positives = 879/886 (99%)

Sequence:

TTGCGCGAGGAGCAGCGCCAGCGCCTGGCCCACTGGCTGCCGCTGTTCCGCGACGCCACGCCAGGGCAGCCG
AGCCGTGGCGACGGCCTGTTGGCGGAGGCCGAGCAGATCGAACGGCAACTGCGCCAGCTCGACCTCGAACGG
CATGCGCCGCTGCTGTCGCCGGCCCTCGCCATGCTCGAAGAGAACAACCTCGAACGCTTCCAGGCCCACGCC
CGCCAGGTGCTCGAGGCACGCACCTGGCTGGCTCGGCTCAACCCGCTGCGCCTGCTGCGGCGCGGCCGCCTG
CGGCGCTTCCTGCGCGAGCACGGCGAGGCCGACGACGACAGCCGCCTGGCCGCCCTCCTCGGCGCCTGCGAC
CTGGAGCGCCAGTGGCGGCCGCTGCGCCGGCAACTGGCGGCGCTGCAACAGAGCCTGGGGCTGGCGACAGTC
GCCACCGATGCCGGTCCGGAACTGACCGGCCTGGCCGGCCACGCCAGCCAGCAGCTGCGCGAGATCCAGACC
CTGGCTCGTGGCCTGGCCCAAGCGCCGCGCGCCGAGCAGCTCGACGCGGTGATCCTCACCGGCGAGAAACAG
CGCTTCGAAGCACTGCTCGGCGACCTCGACGCCGCGCTGATCCGCCAGGCCGCACGCCAGCTCAGCCTGGAC
AAACTGAAGGTGCTCGCCGACTGGCTCGGCGACGAACTGCTGGAACAGCTGCACCGCGCCATCGCCGGCAAC
CAGAGCAACCTGCCGGCCCTCGGCCGCCTGCGCGAGGCGCTACCGCAACTGGTCGCCTACCAGCGCTTCCGT
GGCCGCGCCGGCCAGCTCGAAGCCGCCGAGCTGGAATTCCTGGCCCTGCTGCGCCAGCGCCAGGAACGACTC
GACGCGATTCCCGCCGAAGCACTCGAAGCCACGGTGCGCCGCATGCTCAATCGCGAAGCGCGGCTGGGCTGG
AAGCAGCGCCTGGAACAAGACAATCCGGAACTGCTGTTCAGCCAGGACGAAGCCAGGGCCAGGGTCGCCAGC
CTCGCCGAAGCCGATGTGCAGATGCGCGCGCTGAACCGCGAACTGCTCGGCAAGGGCATCGACGCCGCGCGC
CTGGGCAGCCGCAAGCAATGGGAAGACGTCACCCGCCTGACCGGCAAGCGCTCGCGGCGCCTGCGCGAGTTC
ATCGAGCTGGGCGCCGAACTCGGCCTGATGAGCCTGCGCCCGGTCTGGCTGATGAACCCCGACCTGGCCAGC
CGCGTGCTGCCGCTCAAGGCCGGGCTGTTCGACATGGTGATCTACGACGAAGCCTCGCAGATGCCGGTGGAG
TTCGCCCTGCCGACCCTCTATCGCGGGCGGGTCACGGTGGTCAGCGGCGACGAGAAGCAGATGCCGCCGACC
GCGTTCTTCTCCAGCCGCGTGGAAAGCGACGAGGCCGAACTTTTCGACGGCGAAGCGCCCGACGAGGACGCC
GACGAGGAGCAGCGCGAAGCCTACGAGGACACCTGGAACCGCCGCGAGATCAAGGACTGCCCGGACCTCCTG
CAACTGGCGCGCAACGCCCTGCCCAGCACCACCCTGCAGATCCACTACCGCTCGGCCTACCGCGAGCTGATC
GGCTTCTCCAACGCCTCGTTCTACGGCAACCGCCTGAGCGTGCCGGTACGCCATCCGCAGGCCAACATCCTG
CGCATCAAGCCGCTGGAACTGATCCAGGTGAACGGCCTGTACCAGAACCAGAGCAACGAGCGCGAGGCCGAG
CGAGTCGTCGACTACCTCGCCGAACTCTGGCGCCAACCCTACGCGGCGCGGCCGTCGGTGGGCGTGGTCACC
TTCAACCGCAAGCAGGCCGACCTCATCGAGGAGCGCCTGGAACTGCGCGCCGAGCAGGACGAGACGTTCCGC
GCCGCCTACAGCGAGGAGCGCGAGCGCAGCGAAGACGGCGAGGACATGGGCGTGTTCGTGAAGAACGTGGAG
AACGTGCAGGGCGACGAGCGCGACGTGATCGTCTTCTCCTCCACCTTCGGCCGCAACGGCCAGGGCAGCTTC
CGGCGCAACTTCGGCGTGCTCGGGCAGACCGGCGGCGAGCGCCGCCTCAACGTGGCGGTGACCCGCGCGCGG
CGCAAGGTGGTGATGATCACCTCGATGCCGATCGGCGACATCTCCGACATGCTCGGCACCCAGCGCTCGCCG
AGCAGCCCGCGCGACTACCTGCAAGGCTACCTGGAATACGCCCGCGCACTGTCCGCCGGCGAATTCGCCGGC
ACCGGCCAGCTGCTCGAGCGCCTGCAAACCGACCGCAGCGACCAGCGCCGCCAGCACTACCAGCGGCACGAC
GGCTTCAGCGAGATCGTCGGCGAGTATATCCGCTCGCTGGGCTGGTCCGCCGCGCCCGCCAGCGAAGGCGAC
GCCTTCGGCCTCGACTTCGCCATCGAGAACCCGGCCACCGGCCTTTACGCCATCGGCATCGAATGCGACGCC
CCCTGCCACCCGCTGCTGGAACGCGCCCGCGCCCGGGAAATCTGGCGCCCCTCGGTGCTGCGGCGGGCGATC
CCGTACCTCCACCGGGTTTCCTCCCAGGGCTGGTACCACGACGGCGACAACGAACGCGCACGGCTGCGCGCC
GCCATCGAGAAGGCCCTGGCGCCCAGCGCGGAAACCCATCCCACGGCAGCAGCGGAGGCCTCCCAATGA

Translation:

MREEQRQRLAHWLPLFRDATPGQPSRGDGLLAEAEQIERQLRQLDLERHAPLLSPALAMLEENNLERFQAHA
RQVLEARTWLARLNPLRLLRRGRLRRFLREHGEADDDSRLAALLGACDLERQWRPLRRQLAALQQSLGLATV
ATDAGPELTGLAGHASQQLREIQTLARGLAQAPRAEQLDAVILTGEKQRFEALLGDLDAALIRQAARQLSLD
KLKVLADWLGDELLEQLHRAIAGNQSNLPALGRLREALPQLVAYQRFRGRAGQLEAAELEFLALLRQRQERL
DAIPAEALEATVRRMLNREARLGWKQRLEQDNPELLFSQDEARARVASLAEADVQMRALNRELLGKGIDAAR
LGSRKQWEDVTRLTGKRSRRLREFIELGAELGLMSLRPVWLMNPDLASRVLPLKAGLFDMVIYDEASQMPVE
FALPTLYRGRVTVVSGDEKQMPPTAFFSSRVESDEAELFDGEAPDEDADEEQREAYEDTWNRREIKDCPDLL
QLARNALPSTTLQIHYRSAYRELIGFSNASFYGNRLSVPVRHPQANILRIKPLELIQVNGLYQNQSNEREAE
RVVDYLAELWRQPYAARPSVGVVTFNRKQADLIEERLELRAEQDETFRAAYSEERERSEDGEDMGVFVKNVE
NVQGDERDVIVFSSTFGRNGQGSFRRNFGVLGQTGGERRLNVAVTRARRKVVMITSMPIGDISDMLGTQRSP
SSPRDYLQGYLEYARALSAGEFAGTGQLLERLQTDRSDQRRQHYQRHDGFSEIVGEYIRSLGWSAAPASEGD
AFGLDFAIENPATGLYAIGIECDAPCHPLLERARAREIWRPSVLRRAIPYLHRVSSQGWYHDGDNERARLRA
AIEKALAPSAETHPTAAAEASQ*

AnnotationID:148 GeneID:138

AnnotatorUID: diggins

Modification Date/Time: 2005-04-05 07:07:02

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA2728

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:14063

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17421

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36265

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 138_cdd.html

URL:

Homologs By Global Alignment

Gene ID:138

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

252 PA2728_tr translation of PA2728 886 98.98 99.20 0 4458.0

17563 gb|AAG06116.1|AE004700_12 (AE004700) hypothetical protein PA2728 [Pseudomonas aeruginosa PAO1] 886 98.87 99.20 0 4456.0

GC ORFID: `43140`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2728`	Glimmer Score:
Start: `2457327`	Stop: `2459987`
Length: `2661`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2728 translation of PA2728`	Homolog Bit Score `1721.0`
Other Homologs: `t_PA2727 (ORF: GLIMMER)`
GC ORF Sequence
TTGCGCGAGGAGCAGCGCCAGCGCCTGGCCCACTGGCTGCCGCTGTTCCGCGACGCCACGCCAGGGCAGCCG AGCCGTGGCGACGGCCTGTTGGCGGAGGCCGAGCAGATCGAACGGCAACTGCGCCAGCTCGACCTCGAACGG CATGCGCCGCTGCTGTCGCCGGCCCTCGCCATGCTCGAAGAGAACAACCTCGAACGCTTCCAGGCCCACGCC CGCCAGGTGCTCGAGGCACGCACCTGGCTGGCTCGGCTCAACCCGCTGCGCCTGCTGCGGCGCGGCCGCCTG CGGCGCTTCCTGCGCGAGCACGGCGAGGCCGACGACGACAGCCGCCTGGCCGCCCTCCTCGGCGCCTGCGAC CTGGAGCGCCAGTGGCGGCCGCTGCGCCGGCAACTGGCGGCGCTGCAACAGAGCCTGGGGCTGGCGACAGTC GCCACCGATGCCGGTCCGGAACTGACCGGCCTGGCCGGCCACGCCAGCCAGCAGCTGCGCGAGATCCAGACC CTGGCTCGTGGCCTGGCCCAAGCGCCGCGCGCCGAGCAGCTCGACGCGGTGATCCTCACCGGCGAGAAACAG CGCTTCGAAGCACTGCTCGGCGACCTCGACGCCGCGCTGATCCGCCAGGCCGCACGCCAGCTCAGCCTGGAC AAACTGAAGGTGCTCGCCGACTGGCTCGGCGACGAACTGCTGGAACAGCTGCACCGCGCCATCGCCGGCAAC CAGAGCAACCTGCCGGCCCTCGGCCGCCTGCGCGAGGCGCTACCGCAACTGGTCGCCTACCAGCGCTTCCGT GGCCGCGCCGGCCAGCTCGAAGCCGCCGAGCTGGAATTCCTGGCCCTGCTGCGCCAGCGCCAGGAACGACTC GACGCGATTCCCGCCGAAGCACTCGAAGCCACGGTGCGCCGCATGCTCAATCGCGAAGCGCGGCTGGGCTGG AAGCAGCGCCTGGAACAAGACAATCCGGAACTGCTGTTCAGCCAGGACGAAGCCAGGGCCAGGGTCGCCAGC CTCGCCGAAGCCGATGTGCAGATGCGCGCGCTGAACCGCGAACTGCTCGGCAAGGGCATCGACGCCGCGCGC CTGGGCAGCCGCAAGCAATGGGAAGACGTCACCCGCCTGACCGGCAAGCGCTCGCGGCGCCTGCGCGAGTTC ATCGAGCTGGGCGCCGAACTCGGCCTGATGAGCCTGCGCCCGGTCTGGCTGATGAACCCCGACCTGGCCAGC CGCGTGCTGCCGCTCAAGGCCGGGCTGTTCGACATGGTGATCTACGACGAAGCCTCGCAGATGCCGGTGGAG TTCGCCCTGCCGACCCTCTATCGCGGGCGGGTCACGGTGGTCAGCGGCGACGAGAAGCAGATGCCGCCGACC GCGTTCTTCTCCAGCCGCGTGGAAAGCGACGAGGCCGAACTTTTCGACGGCGAAGCGCCCGACGAGGACGCC GACGAGGAGCAGCGCGAAGCCTACGAGGACACCTGGAACCGCCGCGAGATCAAGGACTGCCCGGACCTCCTG CAACTGGCGCGCAACGCCCTGCCCAGCACCACCCTGCAGATCCACTACCGCTCGGCCTACCGCGAGCTGATC GGCTTCTCCAACGCCTCGTTCTACGGCAACCGCCTGAGCGTGCCGGTACGCCATCCGCAGGCCAACATCCTG CGCATCAAGCCGCTGGAACTGATCCAGGTGAACGGCCTGTACCAGAACCAGAGCAACGAGCGCGAGGCCGAG CGAGTCGTCGACTACCTCGCCGAACTCTGGCGCCAACCCTACGCGGCGCGGCCGTCGGTGGGCGTGGTCACC TTCAACCGCAAGCAGGCCGACCTCATCGAGGAGCGCCTGGAACTGCGCGCCGAGCAGGACGAGACGTTCCGC GCCGCCTACAGCGAGGAGCGCGAGCGCAGCGAAGACGGCGAGGACATGGGCGTGTTCGTGAAGAACGTGGAG AACGTGCAGGGCGACGAGCGCGACGTGATCGTCTTCTCCTCCACCTTCGGCCGCAACGGCCAGGGCAGCTTC CGGCGCAACTTCGGCGTGCTCGGGCAGACCGGCGGCGAGCGCCGCCTCAACGTGGCGGTGACCCGCGCGCGG CGCAAGGTGGTGATGATCACCTCGATGCCGATCGGCGACATCTCCGACATGCTCGGCACCCAGCGCTCGCCG AGCAGCCCGCGCGACTACCTGCAAGGCTACCTGGAATACGCCCGCGCACTGTCCGCCGGCGAATTCGCCGGC ACCGGCCAGCTGCTCGAGCGCCTGCAAACCGACCGCAGCGACCAGCGCCGCCAGCACTACCAGCGGCACGAC GGCTTCAGCGAGATCGTCGGCGAGTATATCCGCTCGCTGGGCTGGTCCGCCGCGCCCGCCAGCGAAGGCGAC GCCTTCGGCCTCGACTTCGCCATCGAGAACCCGGCCACCGGCCTTTACGCCATCGGCATCGAATGCGACGCC CCCTGCCACCCGCTGCTGGAACGCGCCCGCGCCCGGGAAATCTGGCGCCCCTCGGTGCTGCGGCGGGCGATC CCGTACCTCCACCGGGTTTCCTCCCAGGGCTGGTACCACGACGGCGACAACGAACGCGCACGGCTGCGCGCC GCCATCGAGAAGGCCCTGGCGCCCAGCGCGGAAACCCATCCCACGGCAGCAGCGGAGGCCTCCCAATGA