ViewGene
Locus Name:
GeneID:
Location:

GeneID:1355
TrivialName: PA14_62400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62400
PAO1 Ortholog Locus:PA4715
Sequence Length:1236
Protein Length:411
Start: 5566931
Stop: 5565696
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08101.1|AE004885_6 (AE004885) probable aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 410/411 (99%), Positives = 411/411 (100%)
Sequence:
ATGGCTGAATCACGCCCTGCGCGCCGTTTCGCGCGCATCGACCGCCTTCCCCCCTACGTTTTCAATATCACC
GCCGAACTGAAGATGGCCGCTCGTCGCCGTGGCGAGGACATCATCGACCTGAGCATGGGCAATCCCGACGGG
CCGACCCCGCCGCATATCGTCGAGAAGCTCTGCACCGTCGCCCAGCGCGAAGACACCCATGGCTACTCCACC
TCGCGCGGCATCCCGCGCCTGCGCCGGGCCATCTCGCACTGGTACCGCGACCGCTACGACGTGCAGATCGAC
CCGGAAAGCGAAGCCATCGTCACCATCGGCTCCAAGGAAGGCCTCGCGCACCTGATGCTGGCGACCCTCGAC
CATGGCGACACCATCCTCGTGCCCAACCCGAGCTATCCGATCCACATCTACGGTGCGGTGATCGCCGGCGCC
CAGGTGCGCTCGGTGCCGCTGGTGCCGGGCATCGATTTCTTCAACGAGCTGGAACGGGCGATCCGCGAATCG
ATTCCCAAGCCGCGCATGATGATTCTCGGTTTCCCCTCCAACCCTACCGCGCAGTGCGTCGAGCTGGACTTC
TTCGAGCGCGTGGTGGCGCTGGCCAAGCAGTACGACGTGATGGTCGTGCACGACCTGGCCTATGCCGACATC
GTCTACGACGGCTGGAAAGCGCCGTCGATCATGCAGGTACCGGGCGCCAAGGATATCGCCGTGGAGTTCTTC
ACCCTGTCGAAGAGCTACAACATGGCCGGCTGGCGGATCGGCTTCATGGTCGGCAATCCCGAGCTGGTCTCG
GCCCTGGCGCGGATCAAGAGCTACCACGACTACGGCACCTTCACGCCCCTGCAGGTGGCGGCCATCGCCGCT
CTGGAAGGCGACCAGCAGTGCGTCCGCGATATCGCCCGGCAGTACCAGCAGCGCCGCGACGTCCTGGTGAAG
GGACTGCGCGAGGCCGGCTGGATGGTGGAGAACCCGAAGGCCTCGATGTACGTCTGGGCGAAGATCCCCGAG
CCCTACGCGCATCTGGGCTCGCTGGAGTTCGCCAAGAAGCTGTTGCAGGACGCCAAGGTCTCGGTGTCGCCG
GGGATCGGCTTCGGCGACTACGGCGACGATCATGTGCGTTTCGCCCTGATCGAGAACCGCGACCGCCTGCGC
CAGGCGGTGCGCGGGATCAAGTCGATGTTCCGCGCCGACGGGCTGCTGTCGCCGCAGAGGAAGGTCGATAGC
CTGGCGGAGTGA
Translation:
MAESRPARRFARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYST
SRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGA
QVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADI
VYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAA
LEGDQQCVRDIARQYQQRRDVLVKGLREAGWMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSP
GIGFGDYGDDHVRFALIENRDRLRQAVRGIKSMFRADGLLSPQRKVDSLAE*
AnnotationID:1364GeneID:1355
AnnotatorUID: diggins
Modification Date/Time: 2005-05-24 08:08:44
Gene Name:
Confidence Code:3
GeneProduct:putative aminotransferase
Cell Localization:(1) Cytoplasmic
Synonyms:yfdZ
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0436
Secondary Functional Category(ies):putative enzyme
EC Number:2.6.1.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM85078.1|AE013753_9 (AE013753) putative aminotransferase [Yersinia pestis KIM]
          Length = 411

 Score =  745 bits (1923), Expect = 0.0
 Identities = 365/402 (90%), Positives = 381/402 (94%)

>gb|AAN81366.1|AE016764_48 (AE016764) Hypothetical aminotransferase yfdZ [Escherichia coli
           CFT073]
          Length = 412

 Score =  742 bits (1915), Expect = 0.0
 Identities = 363/405 (89%), Positives = 384/405 (94%)

>gb|AAN66442.1|AE016273_11 (AE016777) aminotransferase, class I [Pseudomonas putida KT2440]
          Length = 402

 Score =  739 bits (1908), Expect = 0.0
 Identities = 363/399 (90%), Positives = 380/399 (95%)






 
Structural Features:
COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase 
[Amino acid transport and metabolism]
CD-Length = 393 residues,  98.2% aligned
Score =  379 bits (975), Expect = 3e-106
Identities = 163/390 (41%), Positives = 237/390 (60%), Gaps = 12/390 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2713




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19858




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37652




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1355_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1355
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2464
                           PA4715_tr
                           translation of PA4715
                           411
                           99.75
                           99.99
                           0
                           2133.0
     

     
     
78318
                           gb|AAG08101.1|AE004885_6
                           (AE004885) probable aminotransferase [Pseudomonas aeruginosa PAO1]
                           411
                           99.75
                           99.99
                           0
                           2133.0
     

     
     
78319
                           gb|AAM85078.1|AE013753_9
                           (AE013753) putative aminotransferase [Yersinia pestis KIM]
                           412
                           88.83
                           93.44
                           2
                           1918.0
     

     
     
78320
                           emb|CAC92219.1|
                           (AJ414154) putative aminotransferase [Yersinia pestis CO92]
                           412
                           88.83
                           93.44
                           2
                           1918.0
     

     
     
78321
                           gb|AAC75438.1|
                           (AE000326) putative aminotransferase [Escherichia coli K12]
                           412
                           88.83
                           93.93
                           1
                           1920.0
     

     






      

          
GC ORFID: 44357How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4715Glimmer Score: 

          
Start: 4830611Stop: 4829376

          
Length: 1236


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4715 translation of PA4715Homolog Bit Score 826.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3726 (ORF: BLASTX 733.0), t_PA4715 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGAATCACGCCCTGCGCGCCGTTTCGCGCGCATCGACCGCCTTCCCCCCTACGTTTTCAATATCACC 
GCCGAACTGAAGATGGCCGCTCGTCGCCGTGGCGAGGACATCATCGACCTGAGCATGGGCAATCCCGACGGG 
CCGACCCCGCCGCATATCGTCGAGAAGCTCTGCACCGTCGCCCAGCGCGAAGACACCCATGGCTACTCCACC 
TCGCGCGGCATCCCGCGCCTGCGCCGGGCCATCTCGCACTGGTACCGCGACCGCTACGACGTGCAGATCGAC 
CCGGAAAGCGAAGCCATCGTCACCATCGGCTCCAAGGAAGGCCTCGCGCACCTGATGCTGGCGACCCTCGAC 
CATGGCGACACCATCCTCGTGCCCAACCCGAGCTATCCGATCCACATCTACGGTGCGGTGATCGCCGGCGCC 
CAGGTGCGCTCGGTGCCGCTGGTGCCGGGCATCGATTTCTTCAACGAGCTGGAACGGGCGATCCGCGAATCG 
ATTCCCAAGCCGCGCATGATGATTCTCGGTTTCCCCTCCAACCCTACCGCGCAGTGCGTCGAGCTGGACTTC 
TTCGAGCGCGTGGTGGCGCTGGCCAAGCAGTACGACGTGATGGTCGTGCACGACCTGGCCTATGCCGACATC 
GTCTACGACGGCTGGAAAGCGCCGTCGATCATGCAGGTACCGGGCGCCAAGGATATCGCCGTGGAGTTCTTC 
ACCCTGTCGAAGAGCTACAACATGGCCGGCTGGCGGATCGGCTTCATGGTCGGCAATCCCGAGCTGGTCTCG 
GCCCTGGCGCGGATCAAGAGCTACCACGACTACGGCACCTTCACGCCCCTGCAGGTGGCGGCCATCGCCGCT 
CTGGAAGGCGACCAGCAGTGCGTCCGCGATATCGCCCGGCAGTACCAGCAGCGCCGCGACGTCCTGGTGAAG 
GGACTGCGCGAGGCCGGCTGGATGGTGGAGAACCCGAAGGCCTCGATGTACGTCTGGGCGAAGATCCCCGAG 
CCCTACGCGCATCTGGGCTCGCTGGAGTTCGCCAAGAAGCTGTTGCAGGACGCCAAGGTCTCGGTGTCGCCG 
GGGATCGGCTTCGGCGACTACGGCGACGATCATGTGCGTTTCGCCCTGATCGAGAACCGCGACCGCCTGCGC 
CAGGCGGTGCGCGGGATCAAGTCGATGTTCCGCGCCGACGGGCTGCTGTCGCCGCAGAGGAAGGTCGATAGC 
CTGGCGGAGTGA