ViewGene
Locus Name:
GeneID:
Location:

GeneID:133
TrivialName: PA14_49360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49360
PAO1 Ortholog Locus:PA1163
Sequence Length:2610
Protein Length:869
Start: 4385846
Stop: 4388455
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04552.1|AE004546_7 (AE004546) probable glucosyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 865/869 (99%), Positives = 866/869 (99%)
Sequence:
ATGTCTTCACGCAAGATCGGGCTCAACCTGGTGGTCATCGTCGCCCTGGCCGCCCTCTTCACCGGCATCTGG
GCCCTGTACAACCGTCCGGTCAGCGTACCGGACTGGCCGGAACGCATCTCCGGCTTCTCCTTCTCGCCGTTC
CGCCTCAACCAGAATCCGCAGAGCGGCCGCTACCCCAGCGCCGAACAGATGCGCGCCGACCTGGAACTGGTC
GCCCGGCACACCCACAGCATCCGCACCTATTCGGTCCAGGGCGCGCTCGGCGACATCCCGGCGCTGGCCGAG
GCGTTCGGCCTGCGCGTCAGCCTGGGCATCTGGCTCGGCCCGGACCTGGCCGGCAACGAGGCCGAGATCGCC
CGCGCCATCCGCATCGCCAACGAGTCGCCGAGCGTGGTGCGGGTGATAGTCGGCAACGAGGCGCTGTTCCGC
CGCGAGGTGACGGCAGAACAGTTGATCGCCTACCTCGACCGGGTCCGCGCGGCGGTCAAGGTTCCGGTGACC
ACCGCCGAACAGTGGCACGTCTACCGCGAACACCCGGAACTGGCGCAACACGTCGACCTGATCGCCGCCCAC
GTCCTGCCCTACTGGGAGGCCACGCCGGTGGCCGACGCGGTGGACTTCGTGCTCGAACGCGCGCGCGAACTC
AAGGCCGCCTTCCCGAGGAAGCCGCTGCTGCTCGCTGAGGTCGGCTGGCCGAGCAACGGGCGCATGCGCGGC
AGCGCCGAGGCGACACCCGCGGACCAGGCCATCTACCTGCGGCGCCTGACCAACGCGCTCAACGGCGAAGGC
TACAGCTACTTCGTCATCGAGGCCTTCGACCAGCCCTGGAAGGTCAGCGCCGAAGGCTCGGTGGGCGCCTAC
TGGGGCGTCTACAACGCCGACCGCAAGGCCAAGTTCAACTTCACCGGGCCGGTGGTGCCGATTCCCAAGTGG
CGCGCCCTGGCCATCGCCTCGGCGGTACTCGCGGTACTCGCCTTCACCCTGCTGCTGATCGACAGTTCCTCG
CTGCGCCAGCGCGGGAGGACCTTCCTCGCCGTGGTCTCGTTCGCCTGCGCCTCGGTGCTGGTGTGGATCGCC
TACGACTACAGCCAGCAGTACAGCACCTGGTTCAGCCTGACCGTCGGCGCGTTGCTGGGCGTCGGCGCGCTG
GGGGTGGTCATCGTGCTGTTCACCGAGGCCCACGAGCTGGCCGAGGCGGTCTGGACGCGCAAGCGGCGCCGG
CCATTCCTGCCGATCACCGCCGCGCAGGCCTATCGGCCCAAGGTGTCGATCCACGTGCCCTGCTACAACGAG
CCGCCGGAACTGCTGAAACAGACCCTCGACGCCCTCGCCCGCCTCGACTACCCGGACTACGAAGTCCTGGTG
ATCGACAACAACACTCGCGACCCGGCCGTCTGGCAGCCGGTCGAGGCGCACTGCGCGCGCCTGGGCGAGCGC
TTCCGCTTCTTCCACGTCGCCCCGCTGGAAGGCTTCAAGGCCGGCGCGCTGAACTTCGCCCTGGGCCACGTG
GCGGCGGACGTCGAGGTGGTCGCGGTGATCGACGCCGACTACTGCGTCGACCCCGACTGGCTCAGGCACATG
GTGCCGCACTTCGGCGACCCGCGGATCGCCGTGGTGCAGTCGCCGCAGGACTACCGCGACCAGCACGAGAGC
GCCTTCAAGCGGCTCTGCTACGCCGAGTACAAGGGCTTCTTCCACATCGGCATGGTCACCCGCAACGACCGC
GACGCGATCATCGAGCACGGCACCATGACCATGATCCGGCGCAGCGTGCTGGACGAGCTGAGATGGCCGGAA
TGGTGCATCACCGAAGACGCCGAGCTGGGCCTGCGGGTGTTCGAGAAGGGCCTGTCGGCCGCCTACTTCGAG
CGCAGCTACGGCAAGGGGGTGATGCCCGATACCTTCATCGACTTCAAGAAGCAGCGCTTCCGCTGGGCCTAC
GGCGCGATCCAGATCATGAAGCGGCATACCGACGCCCTGCTGCGCGGCCGCGGTCCCGACGGCAGCCGCCTG
ACCCGCGGCCAGCGCTACCACTTCGTGGCCGGCTGGCTGCCGTGGATCGCCGACGGCCTGAACATCTTCTTC
ACCCTCGGCGCGCTGCTCTGGTCGGCGGCGATGATCATCGTGCCCAAGCGCGTCGACCCGCCGCTGCTGATC
TTCGCGATCCTGCCGCTGGCCCTGTTCGCCTTCAAGGTCGGCAAGATCCTCTTCCTCTACCGGCGCACCGTC
GGCGTCGACCTGCGTGACTCGTTCTTCGCCGCCCTCGCCGGCCTGTCGCTCTCGCACACCATCGCCAAGGCG
GTGCTGTACGGCTTCGTCACCCGCGGCATCCCGTTCTTCCGCACGCCGAAGATGCGCTCCAGCCACGGCCTG
CTGGTGGCCCTGGCGGAGGCCCGCGAGGAAGTCTTCGTGATGCTCCTGCTGTGGGGCGCGGCGGCCGGCATC
GTGGCGGTTCAGGGCGTGCCGAGCCGCGACCTGCTGATCTGGGTCGCCATGCTCCTGGTGCAATCGCTGCCC
TACCTGGCGGCGCTGGTCATGGCCCTGCTCTCGTCGCTGCCGAAACCGCGCGAGGAACTGGCCGGCGGCGCC
GAGCAGATCGGCGGTTGA
Translation:
MSSRKIGLNLVVIVALAALFTGIWALYNRPVSVPDWPERISGFSFSPFRLNQNPQSGRYPSAEQMRADLELV
ARHTHSIRTYSVQGALGDIPALAEAFGLRVSLGIWLGPDLAGNEAEIARAIRIANESPSVVRVIVGNEALFR
REVTAEQLIAYLDRVRAAVKVPVTTAEQWHVYREHPELAQHVDLIAAHVLPYWEATPVADAVDFVLERAREL
KAAFPRKPLLLAEVGWPSNGRMRGSAEATPADQAIYLRRLTNALNGEGYSYFVIEAFDQPWKVSAEGSVGAY
WGVYNADRKAKFNFTGPVVPIPKWRALAIASAVLAVLAFTLLLIDSSSLRQRGRTFLAVVSFACASVLVWIA
YDYSQQYSTWFSLTVGALLGVGALGVVIVLFTEAHELAEAVWTRKRRRPFLPITAAQAYRPKVSIHVPCYNE
PPELLKQTLDALARLDYPDYEVLVIDNNTRDPAVWQPVEAHCARLGERFRFFHVAPLEGFKAGALNFALGHV
AADVEVVAVIDADYCVDPDWLRHMVPHFGDPRIAVVQSPQDYRDQHESAFKRLCYAEYKGFFHIGMVTRNDR
DAIIEHGTMTMIRRSVLDELRWPEWCITEDAELGLRVFEKGLSAAYFERSYGKGVMPDTFIDFKKQRFRWAY
GAIQIMKRHTDALLRGRGPDGSRLTRGQRYHFVAGWLPWIADGLNIFFTLGALLWSAAMIIVPKRVDPPLLI
FAILPLALFAFKVGKILFLYRRTVGVDLRDSFFAALAGLSLSHTIAKAVLYGFVTRGIPFFRTPKMRSSHGL
LVALAEAREEVFVMLLLWGAAAGIVAVQGVPSRDLLIWVAMLLVQSLPYLAALVMALLSSLPKPREELAGGA
EQIGG*
AnnotationID:143GeneID:133
AnnotatorUID: danlee
Modification Date/Time: 2005-07-29 14:02:34
Gene Name:
Confidence Code:3
GeneProduct:probable glucosyl transferase
Cell Localization:()
Synonyms:PA1163
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5309, COG1215
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG5309, Exo-beta-1,3-glucanase. Score: 357, E. value: 3e-99
COG1215, Glycosyltransferases. Score:  167, E. value: 4e-42






   
Genomic Context:






   
Comment:


















    ReferenceID:269




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17411




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:133
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
246
                           PA1163_tr
                           translation of PA1163
                           869
                           99.53
                           99.65
                           0
                           4484.0
     

     
     
17264
                           gb|AAG04552.1|AE004546_7
                           (AE004546) probable glucosyl transferase [Pseudomonas aeruginosa PAO1]
                           869
                           99.53
                           99.65
                           0
                           4484.0
     

     
     
17265
                           gb|AAN67147.1|AE016343_7
                           (AE016779) beta-(1-3)-glucosyl transferase, putative [Pseudomonas putida KT2440]
                           869
                           76.40
                           86.88
                           6
                           3569.0
     

     
     
17266
                           gb|AAO55044.1|
                           (AE016861) glycosyl transferase, group 2 family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           888
                           46.28
                           60.81
                           65
                           2052.0
     

     
     
17267
                           gb|AAC62210.1|
                           (AF047687) beta-(1-3)-glucosyl transferase [Bradyrhizobium japonicum] [Bradyrhizobium japonicum USDA 110]
                           992
                           32.96
                           47.98
                           195
                           1457.0
     

     






      

          
GC ORFID: 43135How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1163Glimmer Score: 

          
Start: 568062Stop: 565453

          
Length: 2610


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1163 translation of PA1163Homolog Bit Score 1731.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4806 (ORF: BLASTX 785.0), t_PA1163 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTTCACGCAAGATCGGGCTCAACCTGGTGGTCATCGTCGCCCTGGCCGCCCTCTTCACCGGCATCTGG 
GCCCTGTACAACCGTCCGGTCAGCGTACCGGACTGGCCGGAACGCATCTCCGGCTTCTCCTTCTCGCCGTTC 
CGCCTCAACCAGAATCCGCAGAGCGGCCGCTACCCCAGCGCCGAACAGATGCGCGCCGACCTGGAACTGGTC 
GCCCGGCACACCCACAGCATCCGCACCTATTCGGTCCAGGGCGCGCTCGGCGACATCCCGGCGCTGGCCGAG 
GCGTTCGGCCTGCGCGTCAGCCTGGGCATCTGGCTCGGCCCGGACCTGGCCGGCAACGAGGCCGAGATCGCC 
CGCGCCATCCGCATCGCCAACGAGTCGCCGAGCGTGGTGCGGGTGATAGTCGGCAACGAGGCGCTGTTCCGC 
CGCGAGGTGACGGCAGAACAGTTGATCGCCTACCTCGACCGGGTCCGCGCGGCGGTCAAGGTTCCGGTGACC 
ACCGCCGAACAGTGGCACGTCTACCGCGAACACCCGGAACTGGCGCAACACGTCGACCTGATCGCCGCCCAC 
GTCCTGCCCTACTGGGAGGCCACGCCGGTGGCCGACGCGGTGGACTTCGTGCTCGAACGCGCGCGCGAACTC 
AAGGCCGCCTTCCCGAGGAAGCCGCTGCTGCTCGCTGAGGTCGGCTGGCCGAGCAACGGGCGCATGCGCGGC 
AGCGCCGAGGCGACACCCGCGGACCAGGCCATCTACCTGCGGCGCCTGACCAACGCGCTCAACGGCGAAGGC 
TACAGCTACTTCGTCATCGAGGCCTTCGACCAGCCCTGGAAGGTCAGCGCCGAAGGCTCGGTGGGCGCCTAC 
TGGGGCGTCTACAACGCCGACCGCAAGGCCAAGTTCAACTTCACCGGGCCGGTGGTGCCGATTCCCAAGTGG 
CGCGCCCTGGCCATCGCCTCGGCGGTACTCGCGGTACTCGCCTTCACCCTGCTGCTGATCGACAGTTCCTCG 
CTGCGCCAGCGCGGGAGGACCTTCCTCGCCGTGGTCTCGTTCGCCTGCGCCTCGGTGCTGGTGTGGATCGCC 
TACGACTACAGCCAGCAGTACAGCACCTGGTTCAGCCTGACCGTCGGCGCGTTGCTGGGCGTCGGCGCGCTG 
GGGGTGGTCATCGTGCTGTTCACCGAGGCCCACGAGCTGGCCGAGGCGGTCTGGACGCGCAAGCGGCGCCGG 
CCATTCCTGCCGATCACCGCCGCGCAGGCCTATCGGCCCAAGGTGTCGATCCACGTGCCCTGCTACAACGAG 
CCGCCGGAACTGCTGAAACAGACCCTCGACGCCCTCGCCCGCCTCGACTACCCGGACTACGAAGTCCTGGTG 
ATCGACAACAACACTCGCGACCCGGCCGTCTGGCAGCCGGTCGAGGCGCACTGCGCGCGCCTGGGCGAGCGC 
TTCCGCTTCTTCCACGTCGCCCCGCTGGAAGGCTTCAAGGCCGGCGCGCTGAACTTCGCCCTGGGCCACGTG 
GCGGCGGACGTCGAGGTGGTCGCGGTGATCGACGCCGACTACTGCGTCGACCCCGACTGGCTCAGGCACATG 
GTGCCGCACTTCGGCGACCCGCGGATCGCCGTGGTGCAGTCGCCGCAGGACTACCGCGACCAGCACGAGAGC 
GCCTTCAAGCGGCTCTGCTACGCCGAGTACAAGGGCTTCTTCCACATCGGCATGGTCACCCGCAACGACCGC 
GACGCGATCATCGAGCACGGCACCATGACCATGATCCGGCGCAGCGTGCTGGACGAGCTGAGATGGCCGGAA 
TGGTGCATCACCGAAGACGCCGAGCTGGGCCTGCGGGTGTTCGAGAAGGGCCTGTCGGCCGCCTACTTCGAG 
CGCAGCTACGGCAAGGGGGTGATGCCCGATACCTTCATCGACTTCAAGAAGCAGCGCTTCCGCTGGGCCTAC 
GGCGCGATCCAGATCATGAAGCGGCATACCGACGCCCTGCTGCGCGGCCGCGGTCCCGACGGCAGCCGCCTG 
ACCCGCGGCCAGCGCTACCACTTCGTGGCCGGCTGGCTGCCGTGGATCGCCGACGGCCTGAACATCTTCTTC 
ACCCTCGGCGCGCTGCTCTGGTCGGCGGCGATGATCATCGTGCCCAAGCGCGTCGACCCGCCGCTGCTGATC 
TTCGCGATCCTGCCGCTGGCCCTGTTCGCCTTCAAGGTCGGCAAGATCCTCTTCCTCTACCGGCGCACCGTC 
GGCGTCGACCTGCGTGACTCGTTCTTCGCCGCCCTCGCCGGCCTGTCGCTCTCGCACACCATCGCCAAGGCG 
GTGCTGTACGGCTTCGTCACCCGCGGCATCCCGTTCTTCCGCACGCCGAAGATGCGCTCCAGCCACGGCCTG 
CTGGTGGCCCTGGCGGAGGCCCGCGAGGAAGTCTTCGTGATGCTCCTGCTGTGGGGCGCGGCGGCCGGCATC 
GTGGCGGTTCAGGGCGTGCCGAGCCGCGACCTGCTGATCTGGGTCGCCATGCTCCTGGTGCAATCGCTGCCC 
TACCTGGCGGCGCTGGTCATGGCCCTGCTCTCGTCGCTGCCGAAACCGCGCGAGGAACTGGCCGGCGGCGCC 
GAGCAGATCGGCGGTTGA