ViewGene
Locus Name:
GeneID:
Location:

GeneID:1300
TrivialName: PA14_22980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22980
PAO1 Ortholog Locus:PA3190
Sequence Length:1263
Protein Length:420
Start: 1992306
Stop: 1993568
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06578.1|AE004743_1 (AE004743) probable binding protein component of ABC sugar transporter [Pseudomonas aeruginosa PAO1]
Identities = 420/420 (100%), Positives = 420/420 (100%)
Sequence:
ATGAATGCGATCCGTCGCCTCTCTGCCGTCATCTGTCTTTCCTCCCTCTGTCTCTCCCCGCTGCTGGCCCAG
GCCGGCGAAGTCGAAGTGCTGCACTGGTGGACCTCCGCCGGCGAGAAGCGCGCCGCCGAAACCCTGAAGAAG
CTGGTCGAAGCCAAGGGCCACACCTGGAAGGACTTCGCCGTGGCCGGCGGTGGCGGCGAGGCGGCGATGACG
GTGCTGAAGACCCGCGCGGTGTCCGGCAATCCGCCGGCCGCGGCGCAGATCAAGGGGCCGGATATCCAGGAG
TGGGGCGAACTGGGCCTGCTCGCCGACCTCAACGCGGTGGCCGCCGAAGGCAAGTGGGACAGCCTGCTGCCG
AAGCAGGTGGCGCAGATCATGAAGTACGACGGCGACTACGTAGCAGTGCCGATCAACGTACACCGGGTCAAC
TGGCTCTACATCAACCCGGAAGTGTTCAAGAAGGCCGGCGCCACCCCGCCGACCACCCTCGACGAACTGTTC
GTCGCCGCCGACAAGCTCAAGGCCGCCGGTTTCACGCCGCTGGCCCATGGCAGCCAACCGTGGCAGGACGGC
ACCGTGTTCGAGAACCTGGTGCTGAGCAAGATGGGTCCGGAAGGCTATCGCAAGGCCTTCGTCGAACAGGAC
AAGGCGACCCTCACCGGAGCGCAGATGGTCGAGGTGTTCGCCGCGCTGAAGAAGCTCCGCGGCTACGTCGAT
GCCGACGCCGCCGGTCGCGAATGGAGCGCCGCCACGGCGATGGTGATCAACGGCAAGGCCGGGATGCAGATC
ATGGGCGACTGGGCGAAGAGCGAATTCACCGCCGCCGGCAAGGTGCCGGGCAAGGACTACCAGTGCCTGCCG
TTCCCCGGCACGCAGAAGGCCTTCGACTACAACATCGACTCGCTGGTGATGTTCAAGCTGAGCAACGCGGAG
AACCGCAAGGCCCAGGAAGACCTGGCGCGCAGCGTGCTCGATCCGTCCTTCCAGAAGGACTTCAACCTCAAC
AAGGGCTCCATCCCGGTTCGCCTGGACGCCGACATGGCGCCGTTCGACAGTTGCGCCCAGCAGTCGATGAAG
GACTTCAAGCAGGCTTCCCAGGACGGCAACCTGGTGCCGAGCATGGCCCACAGCATGGCCGCTTCCAGCTAC
GTGCAGGGGGCGATCTTCGACGTGGTGACCAACTTCTTCAACGACCCCGCCGCGGACCCGCAGAAGGCCGCC
CAGCAACTGGCGGCCGCCATCGAGGCGGCGGCGCAGTAA
Translation:
MNAIRRLSAVICLSSLCLSPLLAQAGEVEVLHWWTSAGEKRAAETLKKLVEAKGHTWKDFAVAGGGGEAAMT
VLKTRAVSGNPPAAAQIKGPDIQEWGELGLLADLNAVAAEGKWDSLLPKQVAQIMKYDGDYVAVPINVHRVN
WLYINPEVFKKAGATPPTTLDELFVAADKLKAAGFTPLAHGSQPWQDGTVFENLVLSKMGPEGYRKAFVEQD
KATLTGAQMVEVFAALKKLRGYVDADAAGREWSAATAMVINGKAGMQIMGDWAKSEFTAAGKVPGKDYQCLP
FPGTQKAFDYNIDSLVMFKLSNAENRKAQEDLARSVLDPSFQKDFNLNKGSIPVRLDADMAPFDSCAQQSMK
DFKQASQDGNLVPSMAHSMAASSYVQGAIFDVVTNFFNDPAADPQKAAQQLAAAIEAAAQ*
AnnotationID:1309GeneID:1300
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 16:04:11
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC sugar transporter
Cell Localization:()
Synonyms:PA3190, gltB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative ABC-type sugar transport system, periplasmic component
Functional Category Confidence Code:5
COGs:COG1653
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO08578.1|AE016797_33 (AE016797) ABC-type sugar transport system, periplasmic component
           [Vibrio vulnificus CMCP6]
          Length = 415

 Score =  553 bits (1424), Expect = e-157
 Identities = 262/413 (63%), Positives = 324/413 (78%)

>gb|AAN66640.1|AE016291_9 (AE016777) sugar ABC transporter, periplasmic sugar-binding protein
           [Pseudomonas putida KT2440]
          Length = 428

 Score =  527 bits (1358), Expect = e-149
 Identities = 277/429 (64%), Positives = 321/429 (74%), Gaps = 13/429 (3%)

>gb|AAL95704.1|AF362907_1 (AF362907) putative binding protein component of ABC sugar
           transporter [Pseudomonas putida]
          Length = 334

 Score =  367 bits (942), Expect = e-101
 Identities = 181/276 (65%), Positives = 213/276 (77%), Gaps = 3/276 (1%)






 
Structural Features:
COG1653, UgpB, ABC-type sugar transport system, periplasmic component 
[Carbohydrate transport and metabolism]
CD-Length = 433 residues,  97.9% aligned
Score =  131 bits (329), Expect = 2e-31
Identities = 106/428 (24%), Positives = 154/428 (35%), Gaps = 14/428 (3%)








   
Genomic Context:






   
Comment:


















    ReferenceID:2603




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19745




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32353




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1300_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1300
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2363
                           PA3190_tr
                           translation of PA3190
                           420
                           99.99
                           99.99
                           0
                           2168.0
     

     
     
75810
                           gb|AAG06578.1|AE004743_1
                           (AE004743) probable binding protein component of ABC sugar transporter [Pseudomonas aeruginosa PAO1]
                           420
                           99.99
                           99.99
                           0
                           2168.0
     

     
     
75813
                           gb|AAN66640.1|AE016291_9
                           (AE016777) sugar ABC transporter, periplasmic sugar-binding protein [Pseudomonas putida KT2440]
                           431
                           64.26
                           74.47
                           14
                           1374.0
     

     
     
75811
                           dbj|BAC93856.1|
                           (AP005334) ABC-type sugar transport system, periplasmic component [Vibrio vulnificus YJ016]
                           420
                           62.61
                           77.38
                           5
                           1429.0
     

     
     
75812
                           gb|AAO08578.1|AE016797_33
                           (AE016797) ABC-type sugar transport system, periplasmic component [Vibrio vulnificus CMCP6]
                           420
                           62.38
                           77.14
                           5
                           1422.0
     

     






      

          
GC ORFID: 44302How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3190Glimmer Score: 

          
Start: 2961625Stop: 2960363

          
Length: 1263


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3190 translation of PA3190Homolog Bit Score 839.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4418 (ORF: BLASTX 504.0), t_PA3190 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATGCGATCCGTCGCCTCTCTGCCGTCATCTGTCTTTCCTCCCTCTGTCTCTCCCCGCTGCTGGCCCAG 
GCCGGCGAAGTCGAAGTGCTGCACTGGTGGACCTCCGCCGGCGAGAAGCGCGCCGCCGAAACCCTGAAGAAG 
CTGGTCGAAGCCAAGGGCCACACCTGGAAGGACTTCGCCGTGGCCGGCGGTGGCGGCGAGGCGGCGATGACG 
GTGCTGAAGACCCGCGCGGTGTCCGGCAATCCGCCGGCCGCGGCGCAGATCAAGGGGCCGGATATCCAGGAG 
TGGGGCGAACTGGGCCTGCTCGCCGACCTCAACGCGGTGGCCGCCGAAGGCAAGTGGGACAGCCTGCTGCCG 
AAGCAGGTGGCGCAGATCATGAAGTACGACGGCGACTACGTAGCAGTGCCGATCAACGTACACCGGGTCAAC 
TGGCTCTACATCAACCCGGAAGTGTTCAAGAAGGCCGGCGCCACCCCGCCGACCACCCTCGACGAACTGTTC 
GTCGCCGCCGACAAGCTCAAGGCCGCCGGTTTCACGCCGCTGGCCCATGGCAGCCAACCGTGGCAGGACGGC 
ACCGTGTTCGAGAACCTGGTGCTGAGCAAGATGGGTCCGGAAGGCTATCGCAAGGCCTTCGTCGAACAGGAC 
AAGGCGACCCTCACCGGAGCGCAGATGGTCGAGGTGTTCGCCGCGCTGAAGAAGCTCCGCGGCTACGTCGAT 
GCCGACGCCGCCGGTCGCGAATGGAGCGCCGCCACGGCGATGGTGATCAACGGCAAGGCCGGGATGCAGATC 
ATGGGCGACTGGGCGAAGAGCGAATTCACCGCCGCCGGCAAGGTGCCGGGCAAGGACTACCAGTGCCTGCCG 
TTCCCCGGCACGCAGAAGGCCTTCGACTACAACATCGACTCGCTGGTGATGTTCAAGCTGAGCAACGCGGAG 
AACCGCAAGGCCCAGGAAGACCTGGCGCGCAGCGTGCTCGATCCGTCCTTCCAGAAGGACTTCAACCTCAAC 
AAGGGCTCCATCCCGGTTCGCCTGGACGCCGACATGGCGCCGTTCGACAGTTGCGCCCAGCAGTCGATGAAG 
GACTTCAAGCAGGCTTCCCAGGACGGCAACCTGGTGCCGAGCATGGCCCACAGCATGGCCGCTTCCAGCTAC 
GTGCAGGGGGCGATCTTCGACGTGGTGACCAACTTCTTCAACGACCCCGCCGCGGACCCGCAGAAGGCCGCC 
CAGCAACTGGCGGCCGCCATCGAGGCGGCGGCGCAGTAA