ViewGene
Locus Name:
GeneID:
Location:

GeneID:1273
TrivialName: PA14_07660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07660
PAO1 Ortholog Locus:PA0587
Sequence Length:1272
Protein Length:423
Start: 659450
Stop: 658179
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03976.1|AE004494_12 (AE004494) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 423/423 (100%), Positives = 423/423 (100%)
Sequence:
ATGAGCTACGTCATCGACCGGCGTCTGAACGGCAAGAACAAGAGCACGGTGAACCGCCAGCGCTTCCTGAGG
CGCTACCGTGAACACATCAAGAAGGCCGTCGAGGAGGCCGTCAGCCGGCGTTCCATCACCGACATGGAGCAC
GGCGAGCAGATCAGCATTCCCGGGCGCGATATCGACGAACCGGTGCTGCACCATGGCCGCGGCGGGCGGCAG
ACCGTCGTCCACCCCGGCAACAAGGAATTCACCGCCGGCGAGCACATCGCCCGCCCATCCGGCGGCGGGGGC
GGCCGCGGCGGCGGCAAGGCCAGCAACAGCGGCGAAGGCATGGACGACTTCGTCTTCCAGATCACCCAGGAG
GAATTCCTCGACTTCATGTTCGAGGACCTGGAGCTGCCCAACCTGGTCAAGCGCCACATCACCGGCACCGAC
ACCTTCAAGACCGTCCGCGCCGGCATCAGCAACGACGGCAACCCGTCGCGCATCAACATCGTCCGCACCCTG
CGCTCGGCCCATGCGCGGCGCATCGCGCTGTCCGGCGGCAGCCGGGCCAAGCTGCGCGCGGCGCTGAAGGAA
CTGGAGCGGATCAAGCGCGAAGAACCGGACAACCTCGGCGATATCCAGGAACTCGAGCTGGAAATCGCCAAG
CTCCGCGCGCGCATCGACCGGGTGCCGTTCCTCGATACCTTCGATCTCAAGTACAACCTGCTGGTCAAGCAG
CCCAACCCCACCTCCAAGGCGGTGATGTTCTGCCTGATGGACGTCTCCGGCTCGATGACCCAGGCGACCAAG
GACATCGCCAAGCGCTTCTTCATCCTGCTCTACCTGTTCCTCAAGCGGAACTACGAGAAGATCGAAGTGGTG
TTCATCCGCCACCACACCAGCGCCCGCGAGGTCGACGAGGAGGAGTTCTTCTACTCCCGCGAGACCGGCGGC
ACCATCGTCTCCAGCGCGCTGAAGATGATGCAGGAGATCATGGCCGAGCGTTATCCGACCCATGAGTGGAAC
ATCTACGCCGCCCAGGCCTCGGACGGCGACAACTGGAACGACGACTCGCCGGTGTGCCGGGACATCCTCCTC
AAGCAGATCATGCCGTTCGTCCAGTACTACACCTACGTCGAGATCACCCCGCGCGAACACCAGGCCCTGTGG
TTCGAGTACGAGCGCGTGCGCGAAGCCTTCGAAGACAGCTTCGCCCAGCAGCAGATCGTCTCGGCATCGGAC
ATCTACCCGGTGTTCCGCGAGCTGTTCCAGAGGAGGCTCGTCGCATGA
Translation:
MSYVIDRRLNGKNKSTVNRQRFLRRYREHIKKAVEEAVSRRSITDMEHGEQISIPGRDIDEPVLHHGRGGRQ
TVVHPGNKEFTAGEHIARPSGGGGGRGGGKASNSGEGMDDFVFQITQEEFLDFMFEDLELPNLVKRHITGTD
TFKTVRAGISNDGNPSRINIVRTLRSAHARRIALSGGSRAKLRAALKELERIKREEPDNLGDIQELELEIAK
LRARIDRVPFLDTFDLKYNLLVKQPNPTSKAVMFCLMDVSGSMTQATKDIAKRFFILLYLFLKRNYEKIEVV
FIRHHTSAREVDEEEFFYSRETGGTIVSSALKMMQEIMAERYPTHEWNIYAAQASDGDNWNDDSPVCRDILL
KQIMPFVQYYTYVEITPREHQALWFEYERVREAFEDSFAQQQIVSASDIYPVFRELFQRRLVA*
AnnotationID:1282GeneID:1273
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 09:09:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0587
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL20209.1| (AE008755) putative cytoplasmic protein [Salmonella typhimurium
           LT2]
          Length = 428

 Score =  521 bits (1342), Expect = e-147
 Identities = 253/423 (59%), Positives = 325/423 (76%), Gaps = 4/423 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2549




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19692




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33859




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1273_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1273
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2319
                           PA0587_tr
                           translation of PA0587
                           423
                           99.99
                           99.99
                           0
                           2186.0
     

     
     
74799
                           gb|AAG03976.1|AE004494_12
                           (AE004494) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           423
                           99.99
                           99.99
                           0
                           2186.0
     

     
     
74800
                           gb|AAO54088.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           423
                           88.65
                           95.03
                           0
                           1983.0
     

     
     
74801
                           gb|AAN66027.1|AE016231_10
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           440
                           84.54
                           90.45
                           17
                           1965.0
     

     
     
74812
                           dbj|BAC95114.1|
                           (AP005339) conserved hypothetical protein [Vibrio vulnificus YJ016]
                           425
                           59.29
                           74.35
                           4
                           1315.0
     

     






      

          
GC ORFID: 44275How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0587Glimmer Score: 

          
Start: 6460793Stop: 6459522

          
Length: 1272


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0587 translation of PA0587Homolog Bit Score 846.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6761 (ORF: BLASTX 772.0), t_PA0587 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCTACGTCATCGACCGGCGTCTGAACGGCAAGAACAAGAGCACGGTGAACCGCCAGCGCTTCCTGAGG 
CGCTACCGTGAACACATCAAGAAGGCCGTCGAGGAGGCCGTCAGCCGGCGTTCCATCACCGACATGGAGCAC 
GGCGAGCAGATCAGCATTCCCGGGCGCGATATCGACGAACCGGTGCTGCACCATGGCCGCGGCGGGCGGCAG 
ACCGTCGTCCACCCCGGCAACAAGGAATTCACCGCCGGCGAGCACATCGCCCGCCCATCCGGCGGCGGGGGC 
GGCCGCGGCGGCGGCAAGGCCAGCAACAGCGGCGAAGGCATGGACGACTTCGTCTTCCAGATCACCCAGGAG 
GAATTCCTCGACTTCATGTTCGAGGACCTGGAGCTGCCCAACCTGGTCAAGCGCCACATCACCGGCACCGAC 
ACCTTCAAGACCGTCCGCGCCGGCATCAGCAACGACGGCAACCCGTCGCGCATCAACATCGTCCGCACCCTG 
CGCTCGGCCCATGCGCGGCGCATCGCGCTGTCCGGCGGCAGCCGGGCCAAGCTGCGCGCGGCGCTGAAGGAA 
CTGGAGCGGATCAAGCGCGAAGAACCGGACAACCTCGGCGATATCCAGGAACTCGAGCTGGAAATCGCCAAG 
CTCCGCGCGCGCATCGACCGGGTGCCGTTCCTCGATACCTTCGATCTCAAGTACAACCTGCTGGTCAAGCAG 
CCCAACCCCACCTCCAAGGCGGTGATGTTCTGCCTGATGGACGTCTCCGGCTCGATGACCCAGGCGACCAAG 
GACATCGCCAAGCGCTTCTTCATCCTGCTCTACCTGTTCCTCAAGCGGAACTACGAGAAGATCGAAGTGGTG 
TTCATCCGCCACCACACCAGCGCCCGCGAGGTCGACGAGGAGGAGTTCTTCTACTCCCGCGAGACCGGCGGC 
ACCATCGTCTCCAGCGCGCTGAAGATGATGCAGGAGATCATGGCCGAGCGTTATCCGACCCATGAGTGGAAC 
ATCTACGCCGCCCAGGCCTCGGACGGCGACAACTGGAACGACGACTCGCCGGTGTGCCGGGACATCCTCCTC 
AAGCAGATCATGCCGTTCGTCCAGTACTACACCTACGTCGAGATCACCCCGCGCGAACACCAGGCCCTGTGG 
TTCGAGTACGAGCGCGTGCGCGAAGCCTTCGAAGACAGCTTCGCCCAGCAGCAGATCGTCTCGGCATCGGAC 
ATCTACCCGGTGTTCCGCGAGCTGTTCCAGAGGAGGCTCGTCGCATGA