ViewGene
Locus Name:
GeneID:
Location:

GeneID:1251
TrivialName: PA14_52370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52370
PAO1 Ortholog Locus:PA0919
Sequence Length:1284
Protein Length:427
Start: 4647593
Stop: 4648876
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04308.1|AE004526_3 (AE004526) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 423/427 (99%), Positives = 425/427 (99%)
Sequence:
ATGTCTGTCGTGAAACGTCACTGGCGCCGTTTTCTGGTCGCCGCCCTGGTGCTGATCGTCGGTGCCGCCCTG
CTGCTCTGGAGCCGACCGGCGGCCCAGGCGAAACTGGAAGCCCTGGCCCTCGACGACGGCGGCCACGCCACC
CTTGCCGAACCCGGCGAGAAGCCGCGCTCGCGGGTGGTGGTGATCGCCGCCCCCGAACAGCAACTGAACGAC
GCCCAGATGCTGAACCTGGCTCACGACAGCGCCGCCCGGGTGATCCAGTACTTCCCCCCGGAAAACGGCGAT
TGCAGGGCGCAGCAGTCCCGGCTCGAAGCGGTCATTGCCCGCCTCGGCGGCAAGCCGAACCTGGTCGCCGGC
ATCGGCCCGGGCTCGACCACCGCCTGGCGCTGGCTCGCCAGCCAGGACGACGACAAGGCCAAGGCGCTCTCG
GTCGGTTTCGACATTGCCCTGGCCGAGCGCGACTGCGACGCCCCGCTGCCGCACCAGGCAGCGCACGGCCAG
TGGCTGCTGGCCTGGAACGACAACCCGGACGACGACACCGCGGTCTTCGTCCGCAAGCAGTCGAGCGCGGAA
ACCAGCATCAGCGACTACGACACCCCGCTGTCCGACGTGCTCGCCCATAAGTTGCGCCTGCAACTGCAAGGC
AACGCCGAGGCCCTGCCGGTACTCGAGGTCCCCGCGGCGCAACCCTCGGACATCGTCACCCTGTTCTATTCC
GGCGACGGCGGCTGGCGCGACCTGGACAAGGACTCTGCCGAGCATATGGCGAGCATGGGCTACCCGGTGGTC
GGCATCGACACCCTGCGCTACTACTGGCAACACAAGAGCCCGGAACAGAGCGCCGCCGACCTCTCCAAGCTG
ATGCAACACTACCGCGAGAAGTGGGGCGCGAAACGTTTCGTCCTGGCCGGCTACTCGTTCGGCGCCGACATC
CTGCCGGCGATCTACAACCGCCTGCCCGGAAAGGACCAGCAGCAAGTGAAAGCCATGCTCCTGCTGGCGCTG
GCGCGGACCGGCAGCTTCGAGATCGAAGTGGAAGGCTGGCTGGGCAAGGCCGGCGAGGAAGCCGCCACCGGC
CCGGAAATGGCCAGGTTGCCGGCGGCCAAGGTGTTCTGCATCTATGGCGCCGAAGAAAAGGACGAAAGCGGC
TGTACCCAACCCCAGGCCGTCGGCGAGAAGCTCGAACTGCCGGGCGGCCACCACTTCGACGAGGACTACCTG
TCCCTGGCGAAGAAGATGCTCCAGGCCATCCGCGACCGCGAGAACGCTCCCGACGCCTGA
Translation:
MSVVKRHWRRFLVAALVLIVGAALLLWSRPAAQAKLEALALDDGGHATLAEPGEKPRSRVVVIAAPEQQLND
AQMLNLAHDSAARVIQYFPPENGDCRAQQSRLEAVIARLGGKPNLVAGIGPGSTTAWRWLASQDDDKAKALS
VGFDIALAERDCDAPLPHQAAHGQWLLAWNDNPDDDTAVFVRKQSSAETSISDYDTPLSDVLAHKLRLQLQG
NAEALPVLEVPAAQPSDIVTLFYSGDGGWRDLDKDSAEHMASMGYPVVGIDTLRYYWQHKSPEQSAADLSKL
MQHYREKWGAKRFVLAGYSFGADILPAIYNRLPGKDQQQVKAMLLLALARTGSFEIEVEGWLGKAGEEAATG
PEMARLPAAKVFCIYGAEEKDESGCTQPQAVGEKLELPGGHHFDEDYLSLAKKMLQAIRDRENAPDA*
AnnotationID:1260GeneID:1251
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 16:04:12
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0919
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3946, pfam06057
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3946, VirJ, Type IV secretory pathway, VirJ component. Score: 474, 8e-13
pfam06057, VirJ, Bacterial virulence protein (VirJ). Score: 275, 5e-75






   
Genomic Context:






   
Comment:


















    ReferenceID:2505




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19648




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1251
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2281
                           PA0919_tr
                           translation of PA0919
                           427
                           99.06
                           99.53
                           0
                           2204.0
     

     
     
74344
                           gb|AAG04308.1|AE004526_3
                           (AE004526) hypothetical protein PA0919 [Pseudomonas aeruginosa PAO1]
                           427
                           99.06
                           99.53
                           0
                           2204.0
     

     
     
74345
                           gb|AAN66825.1|AE016311_5
                           (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440]
                           441
                           58.50
                           72.33
                           25
                           1324.0
     

     
     
74346
                           gb|AAO57451.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           447
                           56.37
                           70.46
                           23
                           1303.0
     

     
     
74347
                           gb|AAB33407.1|
                           AcvB=virulence gene acvB product [Agrobacterium tumefaciens, Peptide Plasmid, 456 aa]
                           487
                           29.77
                           45.37
                           91
                           530.0
     

     






      

          
GC ORFID: 44253How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0919Glimmer Score: 

          
Start: 306314Stop: 305031

          
Length: 1284


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0919 translation of PA0919Homolog Bit Score 853.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4767 (ORF: BLASTX 491.0), t_PA0919 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTGTCGTGAAACGTCACTGGCGCCGTTTTCTGGTCGCCGCCCTGGTGCTGATCGTCGGTGCCGCCCTG 
CTGCTCTGGAGCCGACCGGCGGCCCAGGCGAAACTGGAAGCCCTGGCCCTCGACGACGGCGGCCACGCCACC 
CTTGCCGAACCCGGCGAGAAGCCGCGCTCGCGGGTGGTGGTGATCGCCGCCCCCGAACAGCAACTGAACGAC 
GCCCAGATGCTGAACCTGGCTCACGACAGCGCCGCCCGGGTGATCCAGTACTTCCCCCCGGAAAACGGCGAT 
TGCAGGGCGCAGCAGTCCCGGCTCGAAGCGGTCATTGCCCGCCTCGGCGGCAAGCCGAACCTGGTCGCCGGC 
ATCGGCCCGGGCTCGACCACCGCCTGGCGCTGGCTCGCCAGCCAGGACGACGACAAGGCCAAGGCGCTCTCG 
GTCGGTTTCGACATTGCCCTGGCCGAGCGCGACTGCGACGCCCCGCTGCCGCACCAGGCAGCGCACGGCCAG 
TGGCTGCTGGCCTGGAACGACAACCCGGACGACGACACCGCGGTCTTCGTCCGCAAGCAGTCGAGCGCGGAA 
ACCAGCATCAGCGACTACGACACCCCGCTGTCCGACGTGCTCGCCCATAAGTTGCGCCTGCAACTGCAAGGC 
AACGCCGAGGCCCTGCCGGTACTCGAGGTCCCCGCGGCGCAACCCTCGGACATCGTCACCCTGTTCTATTCC 
GGCGACGGCGGCTGGCGCGACCTGGACAAGGACTCTGCCGAGCATATGGCGAGCATGGGCTACCCGGTGGTC 
GGCATCGACACCCTGCGCTACTACTGGCAACACAAGAGCCCGGAACAGAGCGCCGCCGACCTCTCCAAGCTG 
ATGCAACACTACCGCGAGAAGTGGGGCGCGAAACGTTTCGTCCTGGCCGGCTACTCGTTCGGCGCCGACATC 
CTGCCGGCGATCTACAACCGCCTGCCCGGAAAGGACCAGCAGCAAGTGAAAGCCATGCTCCTGCTGGCGCTG 
GCGCGGACCGGCAGCTTCGAGATCGAAGTGGAAGGCTGGCTGGGCAAGGCCGGCGAGGAAGCCGCCACCGGC 
CCGGAAATGGCCAGGTTGCCGGCGGCCAAGGTGTTCTGCATCTATGGCGCCGAAGAAAAGGACGAAAGCGGC 
TGTACCCAACCCCAGGCCGTCGGCGAGAAGCTCGAACTGCCGGGCGGCCACCACTTCGACGAGGACTACCTG 
TCCCTGGCGAAGAAGATGCTCCAGGCCATCCGCGACCGCGAGAACGCTCCCGACGCCTGA