ViewGene
Locus Name:
GeneID:
Location:

GeneID:1224
TrivialName: PA14_28400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28400
PAO1 Ortholog Locus:PA2760
Sequence Length:1278
Protein Length:425
Start: 2453901
Stop: 2452624
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06148.1|AE004704_2 (AE004704) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 425/425 (100%), Positives = 425/425 (100%)
Sequence:
ATGTTGAAGAAAAGGATTTGCCTGCTGGCACTGGGCATCGCGACTGCAAGCCAGGCGATGGCCAATGACCAA
GAAGCAGCAAAGGGGTTTGTCGAGGACAGCCACCTCGATCTGTTCTTCCGCAATGGCTACATCAGCCGTGAC
TACAAACATGGCCGGCAGGACAAGGCCGAATGGGGCCAGGCCGCCACTGCCACCTTCACCTCCGGCTTCACC
CAGGGGACGGTGGGCGTCGGTGTCGACGCGTTCGGCCTGTACGCGGTACGCCTGGACGGCGGCAAGGGTCGT
AGCGGCGCCGCCGGTATCGACTTCTTCAAGCAGGGCGACAGCGGCTCCGCGGCGGACGATCTGTCCAAGGGC
GGCGCGGCGGTGAAGTTCCGCATCTCCAACACCGTGCTCAAGTACGGCGACCAGATGCCCAGCCTGCCGGTG
CTCAGCTACGACAACTCGCGCCTGCTCCCGGAAAGCTACAGCGGCACCCTGATCACCTCCAAGGAGATCGAG
GGCCTGGAGCTGAACGCCGGTCGCTTCACCGCGGAATCCCGCAAGAGCGCCGAAGGGCGCGACAGCGGCGGC
CTGAAGAGCATCAACGTGTTCGGCGGCAAGTACGCCTTCACCGATCACTTCAACGCCTCGCTGTACGCTTCC
GACGTCGAGGACGTACTGAAGAAGCAGTACATCAACCTGAACTACACCATCCCGCTGCAGGCCGACCAGTCG
CTGAACTTCGACTTCAACGGCTATCGCACCAAGCTGGACAGCGACTTCGCCGACCAGAACTTCAACGGTAAC
CGCGACAACAAGATCTGGAGCCTGGCGGCGTCCTACACCATCGACGCCCACACCTTCATGATCGCCCACCAG
CGCAACACCGGCGACACCGGCTACAACTACGGCTGGTACCAGAACGCCGGCGGCATCGGCGACGGCGGCACC
ACCATCTGGCTGGCCAACTCCTACTGGTCGGACTTCAACGCCGAGGACGAGCGTTCCTGGCAGGTCAGCTAC
GCCCTGGACTTCGCCAAGTACGGCGTGCCCGGCCTGACCTACCGCGTAGCCTACGTGCGCGGCGACAACATC
AAGACCGCCGAGACCAGCAACGGCAAGGAGCGCGAGATCTTCAACCAGGTCCAGTACGTGGTGCAGAGCGGT
CCGGCCAAGGACCTCACCCTGCGTCTGCGCAGCTCGTTCCTGCGTGTCTCCAACGACGCCCGCTCGTACAAC
GACGACGGCAACGAAATCCGTGCCTTCGTCGAGTACCCGTTCAGCGTGTTCTGA
Translation:
MLKKRICLLALGIATASQAMANDQEAAKGFVEDSHLDLFFRNGYISRDYKHGRQDKAEWGQAATATFTSGFT
QGTVGVGVDAFGLYAVRLDGGKGRSGAAGIDFFKQGDSGSAADDLSKGGAAVKFRISNTVLKYGDQMPSLPV
LSYDNSRLLPESYSGTLITSKEIEGLELNAGRFTAESRKSAEGRDSGGLKSINVFGGKYAFTDHFNASLYAS
DVEDVLKKQYINLNYTIPLQADQSLNFDFNGYRTKLDSDFADQNFNGNRDNKIWSLAASYTIDAHTFMIAHQ
RNTGDTGYNYGWYQNAGGIGDGGTTIWLANSYWSDFNAEDERSWQVSYALDFAKYGVPGLTYRVAYVRGDNI
KTAETSNGKEREIFNQVQYVVQSGPAKDLTLRLRSSFLRVSNDARSYNDDGNEIRAFVEYPFSVF*
AnnotationID:1233GeneID:1224
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 13:01:12
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane porin, OprD family
Cell Localization:()
Synonyms:oprQ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative outer membrane protein OprE3
Functional Category Confidence Code:5
COGs:pfam03573
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58813.1| (AE016875) outer membrane porin, OprD family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 424

 Score =  605 bits (1560), Expect = e-172
 Identities = 297/427 (69%), Positives = 349/427 (81%), Gaps = 5/427 (1%)

>gb|AAN65899.1|AE016218_1 (AE016775) outer membrane protein OprE3 [Pseudomonas putida KT2440]
          Length = 439

 Score =  595 bits (1533), Expect = e-169
 Identities = 288/439 (65%), Positives = 346/439 (78%), Gaps = 14/439 (3%)

>gb|AAN66830.1|AE016312_1 (AE016778) porin D [Pseudomonas putida KT2440]
          Length = 421

 Score =  390 bits (1002), Expect = e-108
 Identities = 215/429 (50%), Positives = 280/429 (65%), Gaps = 16/429 (3%)








 
Structural Features:
pfam03573, OprD, outer membrane porin, OprD family. 
CD-Length = 449 residues,  94.4% aligned
Score =  256 bits (655), Expect = 3e-69
Identities = 150/429 (34%), Positives = 213/429 (49%), Gaps = 58/429 (13%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2451




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19594




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36279




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1224_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1224
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2218
                           PA2760_tr
                           translation of PA2760
                           425
                           99.99
                           99.99
                           0
                           2221.0
     

     
     
73514
                           gb|AAG06148.1|AE004704_2
                           (AE004704) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           425
                           99.99
                           99.99
                           0
                           2221.0
     

     
     
73515
                           dbj|BAA22267.1|
                           (AB006797) OprE3 [Pseudomonas aeruginosa]
                           425
                           99.76
                           99.76
                           0
                           2217.0
     

     
     
73516
                           gb|AAO58813.1|
                           (AE016875) outer membrane porin, OprD family [Pseudomonas syringae pv. tomato str. DC3000]
                           427
                           69.55
                           81.73
                           5
                           1565.0
     

     
     
73517
                           gb|AAN65899.1|AE016218_1
                           (AE016775) outer membrane protein OprE3 [Pseudomonas putida KT2440]
                           440
                           65.90
                           79.31
                           16
                           1547.0
     

     






      

          
GC ORFID: 44226How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2760Glimmer Score: 

          
Start: 2500025Stop: 2501302

          
Length: 1278


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2760 translation of PA2760Homolog Bit Score 860.0

          
Other Homologs:  t_PA0958 (ORF: BLASTX 341.0), psyr_15may02_Scaffold3_revised_gene4762 (ORF: BLASTX 278.0), t_PA2760 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGAAGAAAAGGATTTGCCTGCTGGCACTGGGCATCGCGACTGCAAGCCAGGCGATGGCCAATGACCAA 
GAAGCAGCAAAGGGGTTTGTCGAGGACAGCCACCTCGATCTGTTCTTCCGCAATGGCTACATCAGCCGTGAC 
TACAAACATGGCCGGCAGGACAAGGCCGAATGGGGCCAGGCCGCCACTGCCACCTTCACCTCCGGCTTCACC 
CAGGGGACGGTGGGCGTCGGTGTCGACGCGTTCGGCCTGTACGCGGTACGCCTGGACGGCGGCAAGGGTCGT 
AGCGGCGCCGCCGGTATCGACTTCTTCAAGCAGGGCGACAGCGGCTCCGCGGCGGACGATCTGTCCAAGGGC 
GGCGCGGCGGTGAAGTTCCGCATCTCCAACACCGTGCTCAAGTACGGCGACCAGATGCCCAGCCTGCCGGTG 
CTCAGCTACGACAACTCGCGCCTGCTCCCGGAAAGCTACAGCGGCACCCTGATCACCTCCAAGGAGATCGAG 
GGCCTGGAGCTGAACGCCGGTCGCTTCACCGCGGAATCCCGCAAGAGCGCCGAAGGGCGCGACAGCGGCGGC 
CTGAAGAGCATCAACGTGTTCGGCGGCAAGTACGCCTTCACCGATCACTTCAACGCCTCGCTGTACGCTTCC 
GACGTCGAGGACGTACTGAAGAAGCAGTACATCAACCTGAACTACACCATCCCGCTGCAGGCCGACCAGTCG 
CTGAACTTCGACTTCAACGGCTATCGCACCAAGCTGGACAGCGACTTCGCCGACCAGAACTTCAACGGTAAC 
CGCGACAACAAGATCTGGAGCCTGGCGGCGTCCTACACCATCGACGCCCACACCTTCATGATCGCCCACCAG 
CGCAACACCGGCGACACCGGCTACAACTACGGCTGGTACCAGAACGCCGGCGGCATCGGCGACGGCGGCACC 
ACCATCTGGCTGGCCAACTCCTACTGGTCGGACTTCAACGCCGAGGACGAGCGTTCCTGGCAGGTCAGCTAC 
GCCCTGGACTTCGCCAAGTACGGCGTGCCCGGCCTGACCTACCGCGTAGCCTACGTGCGCGGCGACAACATC 
AAGACCGCCGAGACCAGCAACGGCAAGGAGCGCGAGATCTTCAACCAGGTCCAGTACGTGGTGCAGAGCGGT 
CCGGCCAAGGACCTCACCCTGCGTCTGCGCAGCTCGTTCCTGCGTGTCTCCAACGACGCCCGCTCGTACAAC 
GACGACGGCAACGAAATCCGTGCCTTCGTCGAGTACCCGTTCAGCGTGTTCTGA