ViewGene
Locus Name:
GeneID:
Location:

GeneID:1206
TrivialName: PA14_10600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10600
PAO1 Ortholog Locus:PA4126
Sequence Length:1305
Protein Length:434
Start: 913832
Stop: 912528
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07513.1|AE004829_3 (AE004829) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 434/434 (100%), Positives = 434/434 (100%)
Sequence:
ATGAGCACAGCCAGCACCCTGAACAGCACCACCCTGCCTCTCAGCGACAGCACCCACGACCGCGTCACCTGG
CGGCTGATGCCGCTGCTGCTGGTGTGCTACGTCTTCGCCCATCTGGACCGCATCAACATCGGTTTCGCCAAA
TTGCAGATGAGCGCCGACCTGCACTTCAGCGACACCGTCTACGGTCTCGGCGCCGGGCTATTCTTCATCGCC
TATGCGCTGTTCGGCCTGCCCAGCAACCTGATGCTGGAACGGATCGGCCCGCGCCGCTGGATCGCCTGCCTG
ATGCTGGTCTGGGGCTGTCTCTCCACCGCCATGCTGCTGGTGGAGACCGCACGCGGCTTCTACCTGCTGCGC
TTTCTTCTGGGGGTCGCCGAGGCCGGCTTCTTCCCCGGTATCCTGGTCTACCTGAACCGTTGGTTCCCGGCG
CGCCGACGCGGGCAGATCACCGCCCTGTTCGCCATCGCCGTGCCCATGGCCGGGGTGATCGGCGGACCGCTT
TCGGGCTGGATCCTAGAAGGCTTCCATGACGCCCTCGGACTGCGCGGCTGGCAGTGGATGTTCCTGATCGAA
GGCCTGCCGGTTGTGTTGCTCGGCGTGGTGGTCTGGTGCTCGCTGCCGGAAAGCTTCGAACGGGTGACGTGG
CTCAGCGACGAACAGAAGCACCTGCTGCGCGAGGAACTGGCCGGCGAGGAGCAGCGCAAGACCATCACCTCC
TTCTCCGGCATCTTCAGCAATCCGCAGGTGTGGCTGCTGGTGGCGATCTATTTCGCGGTGATGCTGGCGGTG
AACACCATCGCGTTCTGGATGCCGAGCCTGATCCACGGCGCCGGCATCGCCCAGGACAGCCGCATCGGCATG
CTCAGCGCGGTGCCCTATCTCGCCGGCTGCGCCTTCATGATCTTCATCGGCCGTTCCTCCGACCGCCTGCGC
GAGCGCCGCTGGCACCTGGGCATTCCGTTGCTGATGGCCGCCGCCGGGCTCAGCCTGGCGGCCCTGGCGCCG
ACCAGCGCCTGGCTGGTGATGGGCGGCCTGGTGATCGCCGGGATGGGCGCCAGCGCCGCCCTGCCGATGTTC
TGGCAATTGCCGCCGGCCTTCCTTTCCAGCGCCACCCTGGCCGCCGGAATCGCCCTGATCAGTTCCTTCGGC
AGCATCGCCGCCTTCCTCGCGCCCTACCTGATCGGCTGGATGCGCGACACCACCCAGAGCGCCAGCCTGGCC
CTGTACCTGCTGGCCATCCTCATCGCCCTCGGCGCCGGCCTGGTCCTGCGGACCCCCGCCGCCGTGGTCAAC
CCACGCTGA
Translation:
MSTASTLNSTTLPLSDSTHDRVTWRLMPLLLVCYVFAHLDRINIGFAKLQMSADLHFSDTVYGLGAGLFFIA
YALFGLPSNLMLERIGPRRWIACLMLVWGCLSTAMLLVETARGFYLLRFLLGVAEAGFFPGILVYLNRWFPA
RRRGQITALFAIAVPMAGVIGGPLSGWILEGFHDALGLRGWQWMFLIEGLPVVLLGVVVWCSLPESFERVTW
LSDEQKHLLREELAGEEQRKTITSFSGIFSNPQVWLLVAIYFAVMLAVNTIAFWMPSLIHGAGIAQDSRIGM
LSAVPYLAGCAFMIFIGRSSDRLRERRWHLGIPLLMAAAGLSLAALAPTSAWLVMGGLVIAGMGASAALPMF
WQLPPAFLSSATLAAGIALISSFGSIAAFLAPYLIGWMRDTTQSASLALYLLAILIALGAGLVLRTPAAVVN
PR*
AnnotationID:1215GeneID:1206
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 13:01:54
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:hpaX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2271,COG2223
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM43443.1| (AE012550) MFS transporter [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 461

 Score =  473 bits (1218), Expect = e-133
 Identities = 229/439 (52%), Positives = 300/439 (68%), Gaps = 7/439 (1%)

>gb|AAM39191.1| (AE012090) MFS transporter [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 456

 Score =  471 bits (1213), Expect = e-132
 Identities = 229/439 (52%), Positives = 301/439 (68%), Gaps = 7/439 (1%)

>emb|CAD16059.1| (AL646069) PROBABLE PERMEASE TRANSMEMBRANE PROTEIN [Ralstonia
           solanacearum]
          Length = 442

 Score =  457 bits (1177), Expect = e-128
 Identities = 214/417 (51%), Positives = 291/417 (69%)






 
Structural Features:
COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]
CD-Length = 448 residues,  92.9% aligned
Score = 95.7 bits (238), Expect = 9e-21
Identities = 88/423 (20%), Positives = 158/423 (37%), Gaps = 20/423 (4%)

COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
CD-Length = 417 residues,  84.4% aligned
Score = 78.7 bits (194), Expect = 1e-15
Identities = 81/379 (21%), Positives = 141/379 (37%), Gaps = 39/379 (10%)







   
Genomic Context:
other possible gene name: ttuB






   
Comment:


















    ReferenceID:2415




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19558




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36856




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1206_cdd.html


    		




 
URL:

















    ReferenceID:36954




  
Author/Investigator(s):
        Prieto MA, Garcia JL.





  
Title:
        Identification of a novel positive regulator of the 4-hydroxyphenylacetate catabolic pathway of Escherichia coli.




  
PubMed:
        9126350


MedLine:
        




    
Source:
Biochem Biophys Res Commun. 1997 Mar 27;232(3):759-65.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9126350

















    ReferenceID:36957




  
Author/Investigator(s):
        Prieto MA, Diaz E, Garcia JL.





  
Title:
        Molecular characterization of the 4-hydroxyphenylacetate catabolic pathway of Escherichia coli W: engineering a mobile aromatic degradative cluster.




  
PubMed:
        8550403


MedLine:
        




    
Source:
J Bacteriol. 1996 Jan;178(1):111-20.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8550403









           
Homologs By Global Alignment 

           

       



     
Gene ID:1206
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2185
                           PA4126_tr
                           translation of PA4126
                           434
                           99.99
                           99.99
                           0
                           2232.0
     

     
     
72879
                           gb|AAG07513.1|AE004829_3
                           (AE004829) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           434
                           99.99
                           99.99
                           0
                           2232.0
     

     
     
72881
                           gb|AAM39191.1|
                           (AE012090) MFS transporter [Xanthomonas axonopodis pv. citri str. 306]
                           457
                           50.10
                           65.86
                           24
                           1220.0
     

     
     
72880
                           gb|AAM43443.1|
                           (AE012550) MFS transporter [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           462
                           49.56
                           64.93
                           29
                           1225.0
     

     
     
72882
                           emb|CAD16059.1|
                           (AL646069) PROBABLE PERMEASE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           449
                           48.55
                           66.14
                           22
                           1177.0
     

     






      

          
GC ORFID: 44208How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4126Glimmer Score: 

          
Start: 4040105Stop: 4041409

          
Length: 1305


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4126 translation of PA4126Homolog Bit Score 864.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7570 (ORF: BLASTX 421.0), psyr_15may02_Scaffold1_revised_gene740 (ORF: BLASTX 316.0), t_PA2214 (ORF: BLASTX 304.0), t_PA4126 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCACAGCCAGCACCCTGAACAGCACCACCCTGCCTCTCAGCGACAGCACCCACGACCGCGTCACCTGG 
CGGCTGATGCCGCTGCTGCTGGTGTGCTACGTCTTCGCCCATCTGGACCGCATCAACATCGGTTTCGCCAAA 
TTGCAGATGAGCGCCGACCTGCACTTCAGCGACACCGTCTACGGTCTCGGCGCCGGGCTATTCTTCATCGCC 
TATGCGCTGTTCGGCCTGCCCAGCAACCTGATGCTGGAACGGATCGGCCCGCGCCGCTGGATCGCCTGCCTG 
ATGCTGGTCTGGGGCTGTCTCTCCACCGCCATGCTGCTGGTGGAGACCGCACGCGGCTTCTACCTGCTGCGC 
TTTCTTCTGGGGGTCGCCGAGGCCGGCTTCTTCCCCGGTATCCTGGTCTACCTGAACCGTTGGTTCCCGGCG 
CGCCGACGCGGGCAGATCACCGCCCTGTTCGCCATCGCCGTGCCCATGGCCGGGGTGATCGGCGGACCGCTT 
TCGGGCTGGATCCTAGAAGGCTTCCATGACGCCCTCGGACTGCGCGGCTGGCAGTGGATGTTCCTGATCGAA 
GGCCTGCCGGTTGTGTTGCTCGGCGTGGTGGTCTGGTGCTCGCTGCCGGAAAGCTTCGAACGGGTGACGTGG 
CTCAGCGACGAACAGAAGCACCTGCTGCGCGAGGAACTGGCCGGCGAGGAGCAGCGCAAGACCATCACCTCC 
TTCTCCGGCATCTTCAGCAATCCGCAGGTGTGGCTGCTGGTGGCGATCTATTTCGCGGTGATGCTGGCGGTG 
AACACCATCGCGTTCTGGATGCCGAGCCTGATCCACGGCGCCGGCATCGCCCAGGACAGCCGCATCGGCATG 
CTCAGCGCGGTGCCCTATCTCGCCGGCTGCGCCTTCATGATCTTCATCGGCCGTTCCTCCGACCGCCTGCGC 
GAGCGCCGCTGGCACCTGGGCATTCCGTTGCTGATGGCCGCCGCCGGGCTCAGCCTGGCGGCCCTGGCGCCG 
ACCAGCGCCTGGCTGGTGATGGGCGGCCTGGTGATCGCCGGGATGGGCGCCAGCGCCGCCCTGCCGATGTTC 
TGGCAATTGCCGCCGGCCTTCCTTTCCAGCGCCACCCTGGCCGCCGGAATCGCCCTGATCAGTTCCTTCGGC 
AGCATCGCCGCCTTCCTCGCGCCCTACCTGATCGGCTGGATGCGCGACACCACCCAGAGCGCCAGCCTGGCC 
CTGTACCTGCTGGCCATCCTCATCGCCCTCGGCGCCGGCCTGGTCCTGCGGACCCCCGCCGCCGTGGTCAAC 
CCACGCTGA