ViewGene

Locus Name:
GeneID:
Location:

GeneID: 116

TrivialName: PA14_37730

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_37730

PAO1 Ortholog Locus: PA2070

Sequence Length: 2643

Protein Length: 880

Start: 3362016

Stop: 3364658

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05458.1|AE004634_1 (AE004634) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 872/880 (99%), Positives = 875/880 (99%)

Sequence:

ATGCACCGATCGCTCCACACCGACCCGCCGCTGGGCGCCGCCCTGCTGCTGGCCCTGCAGCTCGCTCCCAGC
AGCGCCGCCGCGGCGGAGGGACAGGCGCCTGTCGACCCGCCCACGGTCCAGTTGCAACGAATCGAGGTGACC
GGTAGCGCGATCCGCCGGGTCGATGCGGAAACCGCGGTGCCGATCAGCGTCCTGCGCGCCGAGGAGCTGCGC
CAACAGGGCGTGACCAGCACCGAGGAACTGATCGGCCGGCTTTCCGGCAACCAGGGCGTATACAACTCCAGT
CGCTCGGTCGGCAGCGCCACCGGCGGCGCCTCGTTCGCCGACCTGCGCGGGATCGGCGCGAACAAGACCCTG
GTGCTGCTCAACGGCCGGCGTCTGGCGAACAATGCCATCGACGGCTCCGCCGTGGATCTCAACACCATTCCC
TTCGCCGCCATCGACCGGGTCGAGGTGCTGCGCGACGGCGCCTCCGCACTGTACGGCACCGATGCCATCGGC
GGGGTGATCAACTTCATCACCCGCAAGAGCCTGAACGAAGGCCGCGTCGACAGCGGCTACGCCTCCCCCACC
CAGGACGGCGGCGGCAACCAGCGCAACGTCAGCGCTAGCTGGGGCTTCGGCGAGCTGGAGGAGGATCGCTTC
AATGTCTTCGCGGTGGCCAACTACGACAAGCAGGAACGCCTCGGCGCCAAGGACCGCGGCTACACCTACAAC
TACCAGCCGGGACGCGGCCTCGACTACAGCTCCGGCACCGCCTTCCCCGGCAACTGGAGCCAGGGCGCCAAC
GCCAGCAATCCGCTGGCCGCCGGCGGTTGCAAGGGCGCCGACCTGATCCCGCGCAACGGCATCTGCCGGCAG
AGCCTGTGGCGCTACCTCGACCTGGTGCCGGAAACCGAGAAGACCTCGGTGTTCAGCCGCGCCACCGGCAAG
CTGGCCGACGAGCACAACGTCAGCCTGGAGTACTTCTGGTCGCGCAACGACAACGCTACCCAGGTCGGCCCA
GGGACCCTCACCGGCCTGCAGATCGATCCCGGCACCGCCTTCTATCCCGGCAACGGCATCACTCCCGGTCCC
GGCGGCTTCGTCCTCGACCCGAGCCGGCCGGTGGAGGTCAACTGGCGGCAGAGCGTGCTCGGGCCACGCCTG
CAATCCTCGCAGAACACCGGCCAGCGCCTGCTGCTCGGCTTCGACGGCCAGTTCGCCGGCTGGGACTACGAT
ATCGGCGCCTCGTACAACCAGAACAAGGTGGTCGACCATATCCACAGCGGCTACGTCGACGATCGCGCCGCC
GCCCTCGGCATCGCCAACGGGACGCTGAACCCGTTCGGGCCGCAGACCGACGCCGGCCTCGCCTACCTCGGC
AGCCATGCCCTGAGCGGCGACTTCCGTACCTCGGTCGGCCGCGTCAAGGGCCTGGACGCCCGCGCCAGCCGG
GAGATCGGCGACTGGTTCGGCGCCGGGCCGGCGGCCCTGGCGCTGGGCGGCGAATTCCGCAAGGAAGCGTTC
CACCAGGACATCCAGGACTTCGCCGGCAACGTGCAGAGCCTCGGCGTCGATCCCGCCGCCACGGTCAGCGGC
GAGCGCAACCTGAAGGCGCAGTACGCCGAACTCAACGTGCCGGTGCTGGACAGCCTGGAACTCAGCGCGGCG
ATCCGCCACGACAAGTACAGCGACTTCGGCAGCACTACCAACCCGAAATATTCGTTCCGCTTCCAGCCGTTC
CGCCAGTTGGTCCTGCGCGGCGCCTACAGCGAAGGTTTCCGCGCGCCGTCGCTGTACGAACTGTACAACCCG
ACCTTCACCACCTATACCAGCGCCAACTACGACGACCCACGCCTGTGCGCCGGCGGCCAGCCGAGCCAGGGC
GGCATCGCCAACCGCGACTGCGCCCAGCAGTTCTACAACGCCACCGGCGGCAACACCGACCTGCGACCGGAA
ACCGCGCGCAACGTTACCCTGGGCCTGGTCTACCAGCCGCTGCGCGACCTTTCCGTCGGCCTGGACTTCTGG
TGGATCAGGATCGCCAACCAGATCGCCGAGTTTCCCGAAGCGGCGATCTTCGCCGACCCGCAGGCCTACGCC
GGACGCATCGTGCGCAAGGCCGACGGCTCGATCGATCACGTCGTCACCGGACTGGCCAACCTCGGCAAAGTG
AAGACCAGCGGCGTCGACCTGAGCCTCGATTATCGTTTCCCGGCCAGCCGCTACGGGCAGTTCGGGCTCGAC
CTGCAAGGCACCTACGTGTCCCGCTACGACTTCCAGCAGCAGATCGGCGGCCAGTACCTGGACAACGTCGGC
GACTTCCAGGGCGTCGGCGTGATCGCCCGCTGGAagCACGTCGCCAACGCCACCTGGAGCCGCGACgcctGG
CAGGCCACCCTGAGCAACCGCTACACCAGCGGCTACAACGACTACGATCGCGCCAGCCACGGCAGGGTCGGC
TCGTGGAACCTCTGGGACCTGGCCGGCAGCTACCGCCTCAGCCATGCGCTGGGGCTGACCCTCGGGGTGAAG
AACCTGTTCGACCGCGAACCGCCGTTCAGCAACCAGACCTACACCTTCCAGAGCGGCTACGACCCGCGCTAC
ACCGATCCCTACGGGCGCATCCTGTTCGGCCGCCTCAGCTACAGCTTCTGA

Translation:

MHRSLHTDPPLGAALLLALQLAPSSAAAAEGQAPVDPPTVQLQRIEVTGSAIRRVDAETAVPISVLRAEELR
QQGVTSTEELIGRLSGNQGVYNSSRSVGSATGGASFADLRGIGANKTLVLLNGRRLANNAIDGSAVDLNTIP
FAAIDRVEVLRDGASALYGTDAIGGVINFITRKSLNEGRVDSGYASPTQDGGGNQRNVSASWGFGELEEDRF
NVFAVANYDKQERLGAKDRGYTYNYQPGRGLDYSSGTAFPGNWSQGANASNPLAAGGCKGADLIPRNGICRQ
SLWRYLDLVPETEKTSVFSRATGKLADEHNVSLEYFWSRNDNATQVGPGTLTGLQIDPGTAFYPGNGITPGP
GGFVLDPSRPVEVNWRQSVLGPRLQSSQNTGQRLLLGFDGQFAGWDYDIGASYNQNKVVDHIHSGYVDDRAA
ALGIANGTLNPFGPQTDAGLAYLGSHALSGDFRTSVGRVKGLDARASREIGDWFGAGPAALALGGEFRKEAF
HQDIQDFAGNVQSLGVDPAATVSGERNLKAQYAELNVPVLDSLELSAAIRHDKYSDFGSTTNPKYSFRFQPF
RQLVLRGAYSEGFRAPSLYELYNPTFTTYTSANYDDPRLCAGGQPSQGGIANRDCAQQFYNATGGNTDLRPE
TARNVTLGLVYQPLRDLSVGLDFWWIRIANQIAEFPEAAIFADPQAYAGRIVRKADGSIDHVVTGLANLGKV
KTSGVDLSLDYRFPASRYGQFGLDLQGTYVSRYDFQQQIGGQYLDNVGDFQGVGVIARWKHVANATWSRDAW
QATLSNRYTSGYNDYDRASHGRVGSWNLWDLAGSYRLSHALGLTLGVKNLFDREPPFSNQTYTFQSGYDPRY
TDPYGRILFGRLSYSF*

AnnotationID:126 GeneID:116

AnnotatorUID: diggins

Modification Date/Time: 2005-03-03 06:06:59

Gene Name:

Confidence Code: 3

GeneProduct: putative TonB dependent receptor

Cell Localization: ()

Synonyms: PA2070

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam00593

Secondary Functional Category(ies): membrane proteins

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAO53814.1| (AE016856) TonB system transport protein, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 877

 Score = 1155 bits (2988), Expect = 0.0
 Identities = 555/865 (64%), Positives = 674/865 (77%), Gaps = 7/865 (0%)

Structural Features:

pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues,  99.9% aligned
Score =  226 bits (577), Expect = 8e-60
Identities = 174/842 (20%), Positives = 254/842 (30%), Gaps = 150/842 (17%)

Genomic Context:

Comment:

ReferenceID:235

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17377

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32635

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 116_cdd.html

URL:

Homologs By Global Alignment

Gene ID:116

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

221 PA2070_tr translation of PA2070 880 99.09 99.43 0 4585.0

16594 gb|AAG05458.1|AE004634_1 (AE004634) hypothetical protein PA2070 [Pseudomonas aeruginosa PAO1] 880 99.09 99.43 0 4585.0

16595 gb|AAO53814.1| (AE016856) TonB system transport protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 888 62.72 76.46 19 2989.0

GC ORFID: `43118`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2070`	Glimmer Score:
Start: `1591898`	Stop: `1589256`
Length: `2643`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2070 translation of PA2070`	Homolog Bit Score `1770.0`
Other Homologs: `psyr_15may02_Scaffold2_revised_gene3079 (ORF: BLASTX 137.0), t_PA2070 (ORF: GLIMMER)`
GC ORF Sequence
ATGCACCGATCGCTCCACACCGACCCGCCGCTGGGCGCCGCCCTGCTGCTGGCCCTGCAGCTCGCTCCCAGC AGCGCCGCCGCGGCGGAGGGACAGGCGCCTGTCGACCCGCCCACGGTCCAGTTGCAACGAATCGAGGTGACC GGTAGCGCGATCCGCCGGGTCGATGCGGAAACCGCGGTGCCGATCAGCGTCCTGCGCGCCGAGGAGCTGCGC CAACAGGGCGTGACCAGCACCGAGGAACTGATCGGCCGGCTTTCCGGCAACCAGGGCGTATACAACTCCAGT CGCTCGGTCGGCAGCGCCACCGGCGGCGCCTCGTTCGCCGACCTGCGCGGGATCGGCGCGAACAAGACCCTG GTGCTGCTCAACGGCCGGCGTCTGGCGAACAATGCCATCGACGGCTCCGCCGTGGATCTCAACACCATTCCC TTCGCCGCCATCGACCGGGTCGAGGTGCTGCGCGACGGCGCCTCCGCACTGTACGGCACCGATGCCATCGGC GGGGTGATCAACTTCATCACCCGCAAGAGCCTGAACGAAGGCCGCGTCGACAGCGGCTACGCCTCCCCCACC CAGGACGGCGGCGGCAACCAGCGCAACGTCAGCGCTAGCTGGGGCTTCGGCGAGCTGGAGGAGGATCGCTTC AATGTCTTCGCGGTGGCCAACTACGACAAGCAGGAACGCCTCGGCGCCAAGGACCGCGGCTACACCTACAAC TACCAGCCGGGACGCGGCCTCGACTACAGCTCCGGCACCGCCTTCCCCGGCAACTGGAGCCAGGGCGCCAAC GCCAGCAATCCGCTGGCCGCCGGCGGTTGCAAGGGCGCCGACCTGATCCCGCGCAACGGCATCTGCCGGCAG AGCCTGTGGCGCTACCTCGACCTGGTGCCGGAAACCGAGAAGACCTCGGTGTTCAGCCGCGCCACCGGCAAG CTGGCCGACGAGCACAACGTCAGCCTGGAGTACTTCTGGTCGCGCAACGACAACGCTACCCAGGTCGGCCCA GGGACCCTCACCGGCCTGCAGATCGATCCCGGCACCGCCTTCTATCCCGGCAACGGCATCACTCCCGGTCCC GGCGGCTTCGTCCTCGACCCGAGCCGGCCGGTGGAGGTCAACTGGCGGCAGAGCGTGCTCGGGCCACGCCTG CAATCCTCGCAGAACACCGGCCAGCGCCTGCTGCTCGGCTTCGACGGCCAGTTCGCCGGCTGGGACTACGAT ATCGGCGCCTCGTACAACCAGAACAAGGTGGTCGACCATATCCACAGCGGCTACGTCGACGATCGCGCCGCC GCCCTCGGCATCGCCAACGGGACGCTGAACCCGTTCGGGCCGCAGACCGACGCCGGCCTCGCCTACCTCGGC AGCCATGCCCTGAGCGGCGACTTCCGTACCTCGGTCGGCCGCGTCAAGGGCCTGGACGCCCGCGCCAGCCGG GAGATCGGCGACTGGTTCGGCGCCGGGCCGGCGGCCCTGGCGCTGGGCGGCGAATTCCGCAAGGAAGCGTTC CACCAGGACATCCAGGACTTCGCCGGCAACGTGCAGAGCCTCGGCGTCGATCCCGCCGCCACGGTCAGCGGC GAGCGCAACCTGAAGGCGCAGTACGCCGAACTCAACGTGCCGGTGCTGGACAGCCTGGAACTCAGCGCGGCG ATCCGCCACGACAAGTACAGCGACTTCGGCAGCACTACCAACCCGAAATATTCGTTCCGCTTCCAGCCGTTC CGCCAGTTGGTCCTGCGCGGCGCCTACAGCGAAGGTTTCCGCGCGCCGTCGCTGTACGAACTGTACAACCCG ACCTTCACCACCTATACCAGCGCCAACTACGACGACCCACGCCTGTGCGCCGGCGGCCAGCCGAGCCAGGGC GGCATCGCCAACCGCGACTGCGCCCAGCAGTTCTACAACGCCACCGGCGGCAACACCGACCTGCGACCGGAA ACCGCGCGCAACGTTACCCTGGGCCTGGTCTACCAGCCGCTGCGCGACCTTTCCGTCGGCCTGGACTTCTGG TGGATCAGGATCGCCAACCAGATCGCCGAGTTTCCCGAAGCGGCGATCTTCGCCGACCCGCAGGCCTACGCC GGACGCATCGTGCGCAAGGCCGACGGCTCGATCGATCACGTCGTCACCGGACTGGCCAACCTCGGCAAAGTG AAGACCAGCGGCGTCGACCTGAGCCTCGATTATCGTTTCCCGGCCAGCCGCTACGGGCAGTTCGGGCTCGAC CTGCAAGGCACCTACGTGTCCCGCTACGACTTCCAGCAGCAGATCGGCGGCCAGTACCTGGACAACGTCGGC GACTTCCAGGGCGTCGGCGTGATCGCCCGCTGGAagCACGTCGCCAACGCCACCTGGAGCCGCGACgcctGG CAGGCCACCCTGAGCAACCGCTACACCAGCGGCTACAACGACTACGATCGCGCCAGCCACGGCAGGGTCGGC TCGTGGAACCTCTGGGACCTGGCCGGCAGCTACCGCCTCAGCCATGCGCTGGGGCTGACCCTCGGGGTGAAG AACCTGTTCGACCGCGAACCGCCGTTCAGCAACCAGACCTACACCTTCCAGAGCGGCTACGACCCGCGCTAC ACCGATCCCTACGGGCGCATCCTGTTCGGCCGCCTCAGCTACAGCTTCTGA