ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1155

TrivialName: PA14_49610

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_49610

PAO1 Ortholog Locus: PA1144

Sequence Length: 1335

Protein Length: 444

Start: 4413782

Stop: 4415116

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04533.1|AE004544_5 (AE004544) probable MFS transporter [Pseudomonas aeruginosa PAO1] Identities = 440/444 (99%), Positives = 440/444 (99%)

Sequence:

ATGAACAACCACAACGGTACCCTGCACCGTGGCTGGCAATCGCTCCAGCGCTGGCGCATCCAGATCTTCGTC
ATCACCTGGCTGGCCTACGCCGCCTTCTACTTCACCCGCAAGGCCTTCTCGGTGGCCAAGCTCGGCATCGCC
GAAGACCCTTCCTTCGAACTCGACAAGAGCGCCATGGCCGATCTCGATGCCCTCTACCTGGCCGCCTACGCC
GTGGGCCAGTTCATGTGGGGGGTGTTCGCCGACCGCTTCGGCACCCGCGTGGTGGTGCTCGGCGGTTTGCTC
ACCTCGGCGCTGGCGGCGCTGGCGATGGGTACCTTCGCCACCCTGCCGATCTTCGCCGCCTGCATGGTGGTC
CAGGGCCTGGCGCAGTCCACCGGCTGGTCGGGGCTGTGCAAGAACATCGGCGCCTTCTTCGCCACCTACGAG
CGAGGCCGCGTGCTCGGCCTGTGGAGTACCTGCTACGCCTTCGGCGGGCTGGTGGCGACGCCGTTCGCCGGC
TGGTGCGCCTACCGGTTGACGCATGACTGGCGCATGGCCTTCCTGTCCTCGGCGGGAGTGGTGCTGGCGGTG
GCCGTGCTGTTCTTCTTCCTCCAGCGCAACCGTCCGCAGGACGTCGGCCTGCCGCCCGTGGAGGCCGAGGCC
GCGCCCCCCGCCAACGCGCCCCGGCCGAGCCATTCCGGCGCCCTGCTGAAGGCGCTCAGGAATCCCCACGTG
CTGGTCCTCGGCATCGCCTACTTCCTGCTCAAGCCGGCGCGCTACGCGATCCTGCTCTGGGGCCCGGTGATC
ATCTACGAACGCATGCCGGAGATCGGCAAGGTCGCCTCGGCCATCGTGCCTTCGGCCTTCGAGGTCGCCGGG
CTGGCCGGGCCGATCCTCATCGGCCTGGCCTCGGACAAGCTGTTCGGCGCCCGCCGCATGCCGGCCTGCGTG
CTCAGCCTGGCGGCGCTGACCCTGAGCCTGGCGCTGTTCGTCCCGGCGATGCAGAGCGGCAGCCTGTACCTG
GTGGTCGGCCTGCTGTTCATGATGGGCGTCACCCTCTACGGGCCGGACTCGATGATCAGCGGCGCCGCCGCC
ATCGACTTCGGCACCAGCGAGGCGGCCGGCACCGCCACCGGCTTCGTCAACGGCTGCGGCTCGGTCGGGGCG
ATCCTCGGCGGCCTGCTGCCGGGCTACTTCGACACCCTCACGGTGTTCTTCGTGTTCACCGCCACCGCGCTG
CTCGCCAGCCTGCTGCTGGTGCCGTTCTGGAACAGCCGGCCGGGCGCGCGCCGCGTCGAACCGAAGGCGCAT
GCCGGCGGGCCGCTGCTGGCGGCCGGCAAGCCGCGTTGA

Translation:

MNNHNGTLHRGWQSLQRWRIQIFVITWLAYAAFYFTRKAFSVAKLGIAEDPSFELDKSAMADLDALYLAAYA
VGQFMWGVFADRFGTRVVVLGGLLTSALAALAMGTFATLPIFAACMVVQGLAQSTGWSGLCKNIGAFFATYE
RGRVLGLWSTCYAFGGLVATPFAGWCAYRLTHDWRMAFLSSAGVVLAVAVLFFFLQRNRPQDVGLPPVEAEA
APPANAPRPSHSGALLKALRNPHVLVLGIAYFLLKPARYAILLWGPVIIYERMPEIGKVASAIVPSAFEVAG
LAGPILIGLASDKLFGARRMPACVLSLAALTLSLALFVPAMQSGSLYLVVGLLFMMGVTLYGPDSMISGAAA
IDFGTSEAAGTATGFVNGCGSVGAILGGLLPGYFDTLTVFFVFTATALLASLLLVPFWNSRPGARRVEPKAH
AGGPLLAAGKPR*

AnnotationID:1164 GeneID:1155

AnnotatorUID: danlee

Modification Date/Time: 2004-09-13 14:02:25

Gene Name:

Confidence Code: 3

GeneProduct: probable MFS transporter

Cell Localization: (4) Inner membrane protein

Synonyms: PA1144

Cell Localization Confidence Code: 2

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG2271

Secondary Functional Category(ies): Transport of small molecules

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]
      CD-Length = 448 residues,  95.8% aligned
      Score =  382 bits (983), Expect = 4e-107

Genomic Context:

Comment:

ReferenceID:2313

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19455

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1155

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2060 PA1144_tr translation of PA1144 444 99.09 99.09 0 2265.0

69167 gb|AAG04533.1|AE004544_5 (AE004544) probable MFS transporter [Pseudomonas aeruginosa PAO1] 444 99.09 99.09 0 2265.0

2061 PA1569_tr translation of PA1569 459 72.33 79.52 18 1655.0

69168 gb|AAG04958.1|AE004585_6 (AE004585) probable MFS transporter [Pseudomonas aeruginosa PAO1] 459 72.33 79.52 18 1655.0

69169 gb|AAN68157.1|AE016447_6 (AE016783) sugar MFS transporter, putative [Pseudomonas putida KT2440] 452 67.69 78.76 22 1558.0

GC ORFID: `44157`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1144`	Glimmer Score:
Start: `540126`	Stop: `538792`
Length: `1335`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1144 translation of PA1144`	Homolog Bit Score `877.0`
Other Homologs: `t_PA1569 (ORF: BLASTX 639.0), t_PA1144 (ORF: GLIMMER)`
GC ORF Sequence
ATGAACAACCACAACGGTACCCTGCACCGTGGCTGGCAATCGCTCCAGCGCTGGCGCATCCAGATCTTCGTC ATCACCTGGCTGGCCTACGCCGCCTTCTACTTCACCCGCAAGGCCTTCTCGGTGGCCAAGCTCGGCATCGCC GAAGACCCTTCCTTCGAACTCGACAAGAGCGCCATGGCCGATCTCGATGCCCTCTACCTGGCCGCCTACGCC GTGGGCCAGTTCATGTGGGGGGTGTTCGCCGACCGCTTCGGCACCCGCGTGGTGGTGCTCGGCGGTTTGCTC ACCTCGGCGCTGGCGGCGCTGGCGATGGGTACCTTCGCCACCCTGCCGATCTTCGCCGCCTGCATGGTGGTC CAGGGCCTGGCGCAGTCCACCGGCTGGTCGGGGCTGTGCAAGAACATCGGCGCCTTCTTCGCCACCTACGAG CGAGGCCGCGTGCTCGGCCTGTGGAGTACCTGCTACGCCTTCGGCGGGCTGGTGGCGACGCCGTTCGCCGGC TGGTGCGCCTACCGGTTGACGCATGACTGGCGCATGGCCTTCCTGTCCTCGGCGGGAGTGGTGCTGGCGGTG GCCGTGCTGTTCTTCTTCCTCCAGCGCAACCGTCCGCAGGACGTCGGCCTGCCGCCCGTGGAGGCCGAGGCC GCGCCCCCCGCCAACGCGCCCCGGCCGAGCCATTCCGGCGCCCTGCTGAAGGCGCTCAGGAATCCCCACGTG CTGGTCCTCGGCATCGCCTACTTCCTGCTCAAGCCGGCGCGCTACGCGATCCTGCTCTGGGGCCCGGTGATC ATCTACGAACGCATGCCGGAGATCGGCAAGGTCGCCTCGGCCATCGTGCCTTCGGCCTTCGAGGTCGCCGGG CTGGCCGGGCCGATCCTCATCGGCCTGGCCTCGGACAAGCTGTTCGGCGCCCGCCGCATGCCGGCCTGCGTG CTCAGCCTGGCGGCGCTGACCCTGAGCCTGGCGCTGTTCGTCCCGGCGATGCAGAGCGGCAGCCTGTACCTG GTGGTCGGCCTGCTGTTCATGATGGGCGTCACCCTCTACGGGCCGGACTCGATGATCAGCGGCGCCGCCGCC ATCGACTTCGGCACCAGCGAGGCGGCCGGCACCGCCACCGGCTTCGTCAACGGCTGCGGCTCGGTCGGGGCG ATCCTCGGCGGCCTGCTGCCGGGCTACTTCGACACCCTCACGGTGTTCTTCGTGTTCACCGCCACCGCGCTG CTCGCCAGCCTGCTGCTGGTGCCGTTCTGGAACAGCCGGCCGGGCGCGCGCCGCGTCGAACCGAAGGCGCAT GCCGGCGGGCCGCTGCTGGCGGCCGGCAAGCCGCGTTGA