ViewGene
Locus Name:
GeneID:
Location:

GeneID:1150
TrivialName: PA14_70100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70100
PAO1 Ortholog Locus:PA5309
Sequence Length:1320
Protein Length:439
Start: 6251036
Stop: 6252355
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08694.1|AE004943_10 (AE004943) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 433/439 (98%), Positives = 436/439 (99%)
Sequence:
ATGAACGCCCGCGTTCACCAGCCGGTGCATACCGCCCAACACGCCCCCTCCTACTACGCCGCCACGCTCAAC
CGACGCATCGAGTGCCCTCCCCTGGCCGGCGAAGAACAGGCCGACGTGTGCGTCGTCGGCGGCGGCTTCTCG
GGAGTGAACACGGCGTTGGAACTGGCCCAGCGCGGCTTCTCCGTGGTCCTGCTGGAAGCGCACCGGATCGGC
TGGGGCGCCAGTGGGCGCAATGGCGGCCAGTTGATCCGCGGCGTCGGCCATGACGTCGAGCAGTTCCTCCCG
GTGATCGGCGCCGACGGCGTGAAGGCACTCAAGCTGATGGGCCTGGAGGCGGTGGAGATCGTCCGTCGCCGG
GTCGAGCAATACGCCATCGACTGCGATCTGCGCTGGGGCTACTGCGACCTGGCGAACAAGCCCGGCGACTAC
CAGGGCTTCCGCGAGGACATGGAGGAACTCCAGGCCCTCGGCTATCGCCACGAGATGCGCCTGGTGCCGGCC
GCGGAGATGCGCAGCGTGGTCGGCTCCGATCGCTACGTCGGCGGCCTGGTGGACATGGGCTCCGGCCACCTG
CACCCGCTCAACCTGGTCCTCGGCGAAGCCGCCGCTGCCCAGTCGCTGGGCGTCCGCCTGTTCGAGCGCTCG
CCGGTGACGCGCATCGACTACGGCACGGAAGTCCAGGTGCATACCGCCGCCGGCAAGGTGCGGGCGAAGACC
CTGGTGCTGGGCTGCAACGCCTACATGAACGACCTCAACCCGCTGCTCGGCGGCAAGGTACTGCCGGCCGGC
AGCTACGTGATCGCCACCGAACCGCTGGACGAGCAACTGGCCCGCCAACTGCTGCCGCAGAACATGGCAGTG
TGCGACCAGCGCGTGGCCCTCGACTACTACCGGCTCTCCGCCGACAACCGCCTGCTGTTCGGTGGCGCCTGC
CATTATTCCGGCCGCGACCCCAGCGACATCGCCGCCTACATGCGGCCGAAGATGCTGGAGGTATTCCCGCAA
CTGGCGAACGTCCGCATCGACTACCAATGGGGCGGCATGATCGGCATCGGTGCCAATCGCCTGCCACAGATC
GGCCGCCTGCCGGGGCAGCCCAACGTGTACTTCGCCCAGGCCTATTCCGGACACGGGGTGAACGCCACGCAC
CTCGCCGGGCAGTTGCTCGCCGAAGCCATCGGCGGCCAGCAGAGCGACGGCTTCGACCTGTTCGCCAAGGTG
CCGCACATCACCTTCCCCGGCGGCAAGCTGCTGCGCTCGCCACTGCTGGCGCTGGGCATGGCCTGGTACCGG
CTGAAGGAAAAACTCGGTAGCTGA
Translation:
MNARVHQPVHTAQHAPSYYAATLNRRIECPPLAGEEQADVCVVGGGFSGVNTALELAQRGFSVVLLEAHRIG
WGASGRNGGQLIRGVGHDVEQFLPVIGADGVKALKLMGLEAVEIVRRRVEQYAIDCDLRWGYCDLANKPGDY
QGFREDMEELQALGYRHEMRLVPAAEMRSVVGSDRYVGGLVDMGSGHLHPLNLVLGEAAAAQSLGVRLFERS
PVTRIDYGTEVQVHTAAGKVRAKTLVLGCNAYMNDLNPLLGGKVLPAGSYVIATEPLDEQLARQLLPQNMAV
CDQRVALDYYRLSADNRLLFGGACHYSGRDPSDIAAYMRPKMLEVFPQLANVRIDYQWGGMIGIGANRLPQI
GRLPGQPNVYFAQAYSGHGVNATHLAGQLLAEAIGGQQSDGFDLFAKVPHITFPGGKLLRSPLLALGMAWYR
LKEKLGS*
AnnotationID:1159GeneID:1150
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 13:01:59
Gene Name:
Confidence Code:3
GeneProduct:putative Glycine/D-amino acid oxidase
Cell Localization:()
Synonyms:PA5309
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0665
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70838.1|AE016728_7 (AE016793) oxidoreductase, putative [Pseudomonas putida KT2440]
          Length = 430

 Score =  681 bits (1758), Expect = 0.0
 Identities = 332/427 (77%), Positives = 373/427 (87%)

>gb|AAC45300.1| (U38543) oxidoreductase [Escherichia coli]
          Length = 426

 Score =  373 bits (957), Expect = e-102
 Identities = 197/427 (46%), Positives = 267/427 (62%), Gaps = 5/427 (1%)






 
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism]
CD-Length = 387 residues, 100.0% aligned
Score =  214 bits (544), Expect = 2e-56
Identities = 119/398 (29%), Positives = 164/398 (41%), Gaps = 23/398 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2303




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19445




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34792




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1150_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1150
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2050
                           PA5309_tr
                           translation of PA5309
                           439
                           98.63
                           99.31
                           0
                           2271.0
     

     
     
69056
                           gb|AAG08694.1|AE004943_10
                           (AE004943) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           439
                           98.63
                           99.31
                           0
                           2271.0
     

     
     
69058
                           gb|AAN70838.1|AE016728_7
                           (AE016793) oxidoreductase, putative [Pseudomonas putida KT2440]
                           439
                           75.62
                           84.96
                           9
                           1753.0
     

     
     
69057
                           gb|AAO53652.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           439
                           74.94
                           85.87
                           2
                           1755.0
     

     
     
69059
                           gb|AAN68754.1|AE016507_5
                           (AE016785) oxidoreductase, putative [Pseudomonas putida KT2440]
                           439
                           65.83
                           77.44
                           8
                           1553.0
     

     






      

          
GC ORFID: 44152How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5309Glimmer Score: 

          
Start: 5514725Stop: 5516044

          
Length: 1320


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5309 translation of PA5309Homolog Bit Score 879.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3925 (ORF: BLASTX 686.0), t_PA2776 (ORF: BLASTX 395.0), t_PA1565 (ORF: BLASTX 343.0), t_PA2317 (ORF: BLASTX 338.0), psyr_15may02_Scaffold1_revised_gene140 (ORF: BLASTX 178.0), t_PA5309 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCCCGCGTTCACCAGCCGGTGCATACCGCCCAACACGCCCCCTCCTACTACGCCGCCACGCTCAAC 
CGACGCATCGAGTGCCCTCCCCTGGCCGGCGAAGAACAGGCCGACGTGTGCGTCGTCGGCGGCGGCTTCTCG 
GGAGTGAACACGGCGTTGGAACTGGCCCAGCGCGGCTTCTCCGTGGTCCTGCTGGAAGCGCACCGGATCGGC 
TGGGGCGCCAGTGGGCGCAATGGCGGCCAGTTGATCCGCGGCGTCGGCCATGACGTCGAGCAGTTCCTCCCG 
GTGATCGGCGCCGACGGCGTGAAGGCACTCAAGCTGATGGGCCTGGAGGCGGTGGAGATCGTCCGTCGCCGG 
GTCGAGCAATACGCCATCGACTGCGATCTGCGCTGGGGCTACTGCGACCTGGCGAACAAGCCCGGCGACTAC 
CAGGGCTTCCGCGAGGACATGGAGGAACTCCAGGCCCTCGGCTATCGCCACGAGATGCGCCTGGTGCCGGCC 
GCGGAGATGCGCAGCGTGGTCGGCTCCGATCGCTACGTCGGCGGCCTGGTGGACATGGGCTCCGGCCACCTG 
CACCCGCTCAACCTGGTCCTCGGCGAAGCCGCCGCTGCCCAGTCGCTGGGCGTCCGCCTGTTCGAGCGCTCG 
CCGGTGACGCGCATCGACTACGGCACGGAAGTCCAGGTGCATACCGCCGCCGGCAAGGTGCGGGCGAAGACC 
CTGGTGCTGGGCTGCAACGCCTACATGAACGACCTCAACCCGCTGCTCGGCGGCAAGGTACTGCCGGCCGGC 
AGCTACGTGATCGCCACCGAACCGCTGGACGAGCAACTGGCCCGCCAACTGCTGCCGCAGAACATGGCAGTG 
TGCGACCAGCGCGTGGCCCTCGACTACTACCGGCTCTCCGCCGACAACCGCCTGCTGTTCGGTGGCGCCTGC 
CATTATTCCGGCCGCGACCCCAGCGACATCGCCGCCTACATGCGGCCGAAGATGCTGGAGGTATTCCCGCAA 
CTGGCGAACGTCCGCATCGACTACCAATGGGGCGGCATGATCGGCATCGGTGCCAATCGCCTGCCACAGATC 
GGCCGCCTGCCGGGGCAGCCCAACGTGTACTTCGCCCAGGCCTATTCCGGACACGGGGTGAACGCCACGCAC 
CTCGCCGGGCAGTTGCTCGCCGAAGCCATCGGCGGCCAGCAGAGCGACGGCTTCGACCTGTTCGCCAAGGTG 
CCGCACATCACCTTCCCCGGCGGCAAGCTGCTGCGCTCGCCACTGCTGGCGCTGGGCATGGCCTGGTACCGG 
CTGAAGGAAAAACTCGGTAGCTGA