ViewGene
Locus Name:
GeneID:
Location:

GeneID:1147
TrivialName: PA14_34680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34680
PAO1 Ortholog Locus:PA2317
Sequence Length:1299
Protein Length:432
Start: 3080868
Stop: 3079570
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05705.1|AE004657_12 (AE004657) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 432/432 (100%), Positives = 432/432 (100%)
Sequence:
ATGATCAACATCGAGACGCCGACCTACTACACGGCGACCAAGAAGTACGAGCTGTCCTTCCCCTCCCTGGAA
ACCGACCTGGACGCCGACGTGGTGGTGATCGGCGGCGGCTTCTCCGGCATCAACACCGCGCTGGAACTGGCC
GAGCACGGTATCACCGACATCGTCGTGCTGGAGGCCCGCCACCTCGGCTTCGGCGGTACCGGGCGCAACGGC
GGGCAGATCATGGCCGGCATCGGCCACGACCTGGAGAAGATCCGCAAGGACGTCGGCGAGGACGGCCTGCGG
GCGATCTTCGAGATCAGCGACCTCGGCGCCGACATCATCAAGGGCCGCATCGAGAAGTACGCCATCGACGCC
GACTTCTGCCACGGCTACGGCTACATGGGCTTCAACGCGCGCCAGGCGAAGACCCTGCAGGCCTGGGAAAAG
GAGTTCCGGTCGCTCGGCTCGCCCCATGAGATCCGTTACCTGCACGGTGCCGAGGTGCGCCAGATCATCGGC
TCGGACGCCTACGGCAGCGCCCTGCTGCACATGGGCGGCGGCCATGTGCACTCGCTCAACCTGCTGCTCGGC
GAAGCCAAGGCGCTGGCCGGCCTCGGCGCACGGATATTCGAATACAGCCCGGCGCTGGAGGTGCAATACGGC
GAGCGCATCCGCGTGCGCACGGCCAAGGGCTCGGTCACCGCGAACAAGCTGCTCTGGGCCTGCGACAGCTTC
CTCAACCGGCTCGAGCCCGAGCTGCACCGCACCACCATCAATACCTACGCGTTCCAGATGATGACCGAGCCG
CTGCCGGACGAACTGATCCAGCGGATCAGCCCGATCCGCGGCGCCTACAGCGACATCCGCCCGGTCATCGAC
TACTACCGGGTGACCAACGAGAACCGCCTGCTGTTCGGCGCCGCCACGCCCTTCGTCGAACGCATCCCCGGC
GACCTCAAGGCCTGGAACCGCAAGCTGATGCTGAAGATCTTCCCCTACCTGGAGCACGTCCGCATCGATCTC
GCCTGGGGTGGGCCGATGGCTTGCAGCGCCAACCTGTTCCCGCAGATCGGCAGCCTCTCGGGGCGGCCCAAC
GCGTTCTTCGTCCAGGGTTATTCCGGGTTCGGCGTGACCCCCAGCCACATCGTCTGCAAGGTCCTCGCCGAA
GGCATGAGCGAAGGCTCGGCGCGCTACGACCTGCTCAGCTCGGTGCGCCGCATCCCGATCCACGGCAAGGAC
CACTTCCGCCCGCTGCTGCTCAGCGCGGGCAAGACCTGGCACCAGCTCTCCGGCTACTGGAACGGCCGGCGC
TGA
Translation:
MINIETPTYYTATKKYELSFPSLETDLDADVVVIGGGFSGINTALELAEHGITDIVVLEARHLGFGGTGRNG
GQIMAGIGHDLEKIRKDVGEDGLRAIFEISDLGADIIKGRIEKYAIDADFCHGYGYMGFNARQAKTLQAWEK
EFRSLGSPHEIRYLHGAEVRQIIGSDAYGSALLHMGGGHVHSLNLLLGEAKALAGLGARIFEYSPALEVQYG
ERIRVRTAKGSVTANKLLWACDSFLNRLEPELHRTTINTYAFQMMTEPLPDELIQRISPIRGAYSDIRPVID
YYRVTNENRLLFGAATPFVERIPGDLKAWNRKLMLKIFPYLEHVRIDLAWGGPMACSANLFPQIGSLSGRPN
AFFVQGYSGFGVTPSHIVCKVLAEGMSEGSARYDLLSSVRRIPIHGKDHFRPLLLSAGKTWHQLSGYWNGRR
*
AnnotationID:1156GeneID:1147
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 13:01:30
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid oxidase
Cell Localization:()
Synonyms:PA2317
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative oxidoreductase
Functional Category Confidence Code:5
COGs:COG0665
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL22002.1| (AE008843) putative oxidoreductase [Salmonella typhimurium LT2]
          Length = 433

 Score =  588 bits (1516), Expect = e-167
 Identities = 280/428 (65%), Positives = 342/428 (79%)

>gb|AAN68754.1|AE016507_5 (AE016785) oxidoreductase, putative [Pseudomonas putida KT2440]
          Length = 431

 Score =  334 bits (856), Expect = 7e-91
 Identities = 171/420 (40%), Positives = 258/420 (61%), Gaps = 2/420 (0%)








 
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism]
CD-Length = 387 residues,  99.2% aligned
Score =  192 bits (488), Expect = 8e-50
Identities = 94/394 (23%), Positives = 150/394 (38%), Gaps = 22/394 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2297




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19439




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32475




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1147_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1147
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2046
                           PA2317_tr
                           translation of PA2317
                           432
                           99.99
                           99.99
                           0
                           2270.0
     

     
     
69047
                           gb|AAG05705.1|AE004657_12
                           (AE004657) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           432
                           99.99
                           99.99
                           0
                           2270.0
     

     
     
69048
                           emb|CAE16659.1|
                           (BX571873) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           434
                           68.20
                           82.02
                           2
                           1602.0
     

     
     
69049
                           gb|AAL22002.1|
                           (AE008843) putative oxidoreductase [Salmonella typhimurium LT2]
                           433
                           64.66
                           78.98
                           1
                           1513.0
     

     
     
69050
                           gb|AAO70596.1|
                           (AE016844) putative oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           433
                           64.66
                           78.98
                           1
                           1513.0
     

     






      

          
GC ORFID: 44149How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2317Glimmer Score: 

          
Start: 1873048Stop: 1874346

          
Length: 1299


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2317 translation of PA2317Homolog Bit Score 879.0

          
Other Homologs:  t_PA5309 (ORF: BLASTX 337.0), t_PA2317 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCAACATCGAGACGCCGACCTACTACACGGCGACCAAGAAGTACGAGCTGTCCTTCCCCTCCCTGGAA 
ACCGACCTGGACGCCGACGTGGTGGTGATCGGCGGCGGCTTCTCCGGCATCAACACCGCGCTGGAACTGGCC 
GAGCACGGTATCACCGACATCGTCGTGCTGGAGGCCCGCCACCTCGGCTTCGGCGGTACCGGGCGCAACGGC 
GGGCAGATCATGGCCGGCATCGGCCACGACCTGGAGAAGATCCGCAAGGACGTCGGCGAGGACGGCCTGCGG 
GCGATCTTCGAGATCAGCGACCTCGGCGCCGACATCATCAAGGGCCGCATCGAGAAGTACGCCATCGACGCC 
GACTTCTGCCACGGCTACGGCTACATGGGCTTCAACGCGCGCCAGGCGAAGACCCTGCAGGCCTGGGAAAAG 
GAGTTCCGGTCGCTCGGCTCGCCCCATGAGATCCGTTACCTGCACGGTGCCGAGGTGCGCCAGATCATCGGC 
TCGGACGCCTACGGCAGCGCCCTGCTGCACATGGGCGGCGGCCATGTGCACTCGCTCAACCTGCTGCTCGGC 
GAAGCCAAGGCGCTGGCCGGCCTCGGCGCACGGATATTCGAATACAGCCCGGCGCTGGAGGTGCAATACGGC 
GAGCGCATCCGCGTGCGCACGGCCAAGGGCTCGGTCACCGCGAACAAGCTGCTCTGGGCCTGCGACAGCTTC 
CTCAACCGGCTCGAGCCCGAGCTGCACCGCACCACCATCAATACCTACGCGTTCCAGATGATGACCGAGCCG 
CTGCCGGACGAACTGATCCAGCGGATCAGCCCGATCCGCGGCGCCTACAGCGACATCCGCCCGGTCATCGAC 
TACTACCGGGTGACCAACGAGAACCGCCTGCTGTTCGGCGCCGCCACGCCCTTCGTCGAACGCATCCCCGGC 
GACCTCAAGGCCTGGAACCGCAAGCTGATGCTGAAGATCTTCCCCTACCTGGAGCACGTCCGCATCGATCTC 
GCCTGGGGTGGGCCGATGGCTTGCAGCGCCAACCTGTTCCCGCAGATCGGCAGCCTCTCGGGGCGGCCCAAC 
GCGTTCTTCGTCCAGGGTTATTCCGGGTTCGGCGTGACCCCCAGCCACATCGTCTGCAAGGTCCTCGCCGAA 
GGCATGAGCGAAGGCTCGGCGCGCTACGACCTGCTCAGCTCGGTGCGCCGCATCCCGATCCACGGCAAGGAC 
CACTTCCGCCCGCTGCTGCTCAGCGCGGGCAAGACCTGGCACCAGCTCTCCGGCTACTGGAACGGCCGGCGC 
TGA