ViewGene
Locus Name:
GeneID:
Location:

GeneID:1100
TrivialName: PA14_44260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44260
PAO1 Ortholog Locus:PA1565
Sequence Length:1311
Protein Length:436
Start: 3937420
Stop: 3938730
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04954.1|AE004585_2 (AE004585) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 434/436 (99%), Positives = 435/436 (99%)
Sequence:
ATGAACGCAGCAATCCATCCCCGTCCGGCCGCGGAACGCGCGCCGTCCTACTACGCCGCCACGCTCAACGAG
GAAACCGACTATCCGACCCTGCTGGGCGCGGTGACGGTCGACATCGCCATCATCGGCGGCGGCTTCACCGGC
GTCGCCACGGCGGTCGAACTGGCCGAGCGTGGCTACAAGGTGGCCCTGGTCGAGACCCATCGCATCGGCTGG
GGCGCCAGCGGGCGCAACGGCGGCCAGGTCACCGGCAGCCTGTCCGGCGACGCGGCGATGCACAAGCAGATG
CGCCAGTGGCTGGGCGCCGAGGTCGAGGACTTCATCTGGCACCTGCGCTGGCGCGGCCACGAGATCATCCGC
CAGCGGGTGGAGAAGTACGGCATCGCCTGCGACCTCCGCCATGGCCACCTGCACGCGGCGATGAAGGCCAGC
CACATGGGCGAGCTGCAGGCCTCCTACGAGGAGGCGGTGCGCCGCGGCATGGGCGACCAGGTGCTCCTGCTG
GACAAGGCCGGCGTCCAGGCCCACCTGGAGACCGAGCTGTACTGCGGCGCGCTGAAGAACACCCGCAACATG
CACCTGCACCCGCTCAACCTGTGCATCGGCGAGGCCAGGGCGGCGGCCGGCCTCGGCGCGCTGATCTTCGAA
CATTCCGAGGTCCTGGATATCGTCCACGGCCCGCGGCCGGCGGTGATCACCCGCGAGGGAAGGATCGAGGCG
CAGCAGATCCTGCTTGCCGGCGATGTCTACCACAAGCTCGAACGCAGGCAGCTCAAGGGGATGATCTTCCCG
GCCATGGGCGGAATCGTTACCACCCGGCCGCTGGGCGAGCTGGCACGGGAGATCAACCCGCAGGGGCTGGCG
GTCTACGATTGCCGCTTCGTCCTCGATTACTACCGCCCCACCGCCGACGGCCGCCTGCTGTTCGGTGGCGGC
GCCAACTACTCGGGCCGCGACTCGCGGGACATCGCCGCCGAGCTGCGGCCATGCATCGAGCGCACCTTCCCG
CGCCTGAAGGGCGTGGAGATCGAGTTCCAGTGGAGTTGCGCCATGGGCATCGTGATGAACCGCATCCCCCAG
CTCGGCAAGCTCTCCGACAACGTCTGGTACTGCCAGGGCTACTCGGGGCATGGCGTGGCCACCAGCCACATC
ATGGGCGAAATCATGGCCAAGGCGATGAGCGGGAGCCTGGAGCAGTTCGACACCTTCGCCCGTTGCAAGCAC
CTCAGGGTGCCGCTGGGCGACCTCTTCGGCAATCCGATGCTGGCCGCCGGGATGTGGTACTACCAGCTCATG
GAGAAGCTGCGCTGA
Translation:
MNAAIHPRPAAERAPSYYAATLNEETDYPTLLGAVTVDIAIIGGGFTGVATAVELAERGYKVALVETHRIGW
GASGRNGGQVTGSLSGDAAMHKQMRQWLGAEVEDFIWHLRWRGHEIIRQRVEKYGIACDLRHGHLHAAMKAS
HMGELQASYEEAVRRGMGDQVLLLDKAGVQAHLETELYCGALKNTRNMHLHPLNLCIGEARAAAGLGALIFE
HSEVLDIVHGPRPAVITREGRIEAQQILLAGDVYHKLERRQLKGMIFPAMGGIVTTRPLGELAREINPQGLA
VYDCRFVLDYYRPTADGRLLFGGGANYSGRDSRDIAAELRPCIERTFPRLKGVEIEFQWSCAMGIVMNRIPQ
LGKLSDNVWYCQGYSGHGVATSHIMGEIMAKAMSGSLEQFDTFARCKHLRVPLGDLFGNPMLAAGMWYYQLM
EKLR*
AnnotationID:1109GeneID:1100
AnnotatorUID: diggins
Modification Date/Time: 2005-05-30 07:07:42
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA1565
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0665
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70121.1|AE016652_2 (AE016791) oxidoreductase, putative [Pseudomonas putida KT2440]
          Length = 435

 Score =  725 bits (1871), Expect = 0.0
 Identities = 348/436 (79%), Positives = 390/436 (89%), Gaps = 1/436 (0%)







 
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism]
CD-Length = 387 residues,  94.6% aligned
Score =  178 bits (452), Expect = 1e-45
Identities = 95/377 (25%), Positives = 145/377 (38%), Gaps = 25/377 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2203




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19345




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37308




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1100_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1100
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1982
                           PA1565_tr
                           translation of PA1565
                           436
                           99.54
                           99.77
                           0
                           2297.0
     

     
     
67714
                           gb|AAG04954.1|AE004585_2
                           (AE004585) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           436
                           99.54
                           99.77
                           0
                           2297.0
     

     
     
67715
                           gb|AAN70121.1|AE016652_2
                           (AE016791) oxidoreductase, putative [Pseudomonas putida KT2440]
                           436
                           79.81
                           89.44
                           1
                           1873.0
     

     
     
67716
                           gb|AAN55099.1|AE015647_5
                           (AE015647) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           437
                           60.41
                           76.20
                           9
                           1425.0
     

     
     
1983
                           PA5309_tr
                           translation of PA5309
                           442
                           42.98
                           60.63
                           9
                           894.0
     

     






      

          
GC ORFID: 44102How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1565Glimmer Score: 

          
Start: 1016489Stop: 1015179

          
Length: 1311


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1565 translation of PA1565Homolog Bit Score 889.0

          
Other Homologs:  t_PA5309 (ORF: BLASTX 345.0), psyr_15may02_Scaffold2_revised_gene3925 (ORF: BLASTX 331.0), t_PA2776 (ORF: BLASTX 325.0), psyr_15may02_Scaffold1_revised_gene140 (ORF: BLASTX 155.0), t_PA1565 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCAGCAATCCATCCCCGTCCGGCCGCGGAACGCGCGCCGTCCTACTACGCCGCCACGCTCAACGAG 
GAAACCGACTATCCGACCCTGCTGGGCGCGGTGACGGTCGACATCGCCATCATCGGCGGCGGCTTCACCGGC 
GTCGCCACGGCGGTCGAACTGGCCGAGCGTGGCTACAAGGTGGCCCTGGTCGAGACCCATCGCATCGGCTGG 
GGCGCCAGCGGGCGCAACGGCGGCCAGGTCACCGGCAGCCTGTCCGGCGACGCGGCGATGCACAAGCAGATG 
CGCCAGTGGCTGGGCGCCGAGGTCGAGGACTTCATCTGGCACCTGCGCTGGCGCGGCCACGAGATCATCCGC 
CAGCGGGTGGAGAAGTACGGCATCGCCTGCGACCTCCGCCATGGCCACCTGCACGCGGCGATGAAGGCCAGC 
CACATGGGCGAGCTGCAGGCCTCCTACGAGGAGGCGGTGCGCCGCGGCATGGGCGACCAGGTGCTCCTGCTG 
GACAAGGCCGGCGTCCAGGCCCACCTGGAGACCGAGCTGTACTGCGGCGCGCTGAAGAACACCCGCAACATG 
CACCTGCACCCGCTCAACCTGTGCATCGGCGAGGCCAGGGCGGCGGCCGGCCTCGGCGCGCTGATCTTCGAA 
CATTCCGAGGTCCTGGATATCGTCCACGGCCCGCGGCCGGCGGTGATCACCCGCGAGGGAAGGATCGAGGCG 
CAGCAGATCCTGCTTGCCGGCGATGTCTACCACAAGCTCGAACGCAGGCAGCTCAAGGGGATGATCTTCCCG 
GCCATGGGCGGAATCGTTACCACCCGGCCGCTGGGCGAGCTGGCACGGGAGATCAACCCGCAGGGGCTGGCG 
GTCTACGATTGCCGCTTCGTCCTCGATTACTACCGCCCCACCGCCGACGGCCGCCTGCTGTTCGGTGGCGGC 
GCCAACTACTCGGGCCGCGACTCGCGGGACATCGCCGCCGAGCTGCGGCCATGCATCGAGCGCACCTTCCCG 
CGCCTGAAGGGCGTGGAGATCGAGTTCCAGTGGAGTTGCGCCATGGGCATCGTGATGAACCGCATCCCCCAG 
CTCGGCAAGCTCTCCGACAACGTCTGGTACTGCCAGGGCTACTCGGGGCATGGCGTGGCCACCAGCCACATC 
ATGGGCGAAATCATGGCCAAGGCGATGAGCGGGAGCCTGGAGCAGTTCGACACCTTCGCCCGTTGCAAGCAC 
CTCAGGGTGCCGCTGGGCGACCTCTTCGGCAATCCGATGCTGGCCGCCGGGATGTGGTACTACCAGCTCATG 
GAGAAGCTGCGCTGA