ViewGene
Locus Name:
GeneID:
Location:

GeneID:110
TrivialName: PA14_12230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12230
PAO1 Ortholog Locus:PA3987
Sequence Length:2622
Protein Length:873
Start: 1058031
Stop: 1055410
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07374.1|AE004816_10 (AE004816) leucyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
Identities = 870/873 (99%), Positives = 872/873 (99%)
Sequence:
ATGCACGAGCAATATCAGCCACTCGAGATCGAAACCCAGGCCCAGAACTACTGGAAAGAACACCAGTCCTTC
CTCGTCAGGGAGCTACCCGACAAGGAGAAGTTCTACTGCCTGTCGATGTTCCCGTATCCGAGCGGCAAGCTG
CACATGGGCCACGTGCGCAACTACACCATCGGCGACGTGATCAGCCGCTACCACCGCATGCAGGGCCGCAAC
GTGCTGCAGCCGATGGGCTGGGACGCGTTCGGCATGCCGGCGGAAAACGCCGCGATGAAGAACAACGTCGCC
CCGGCGGCCTGGACCTACGACAACATCGCCTACATGAAGTCGCAGTTGGACAGCCTCGGCCTGGCGATCGAC
TGGAGCCGCGAGGTCACCACCTGCAAGCCGGACTACTACCGCTGGGAGCAGTGGCTGTTCACCCGCCTGTTC
GAAAAAGGGGTGATCTACCGCAAGAACGGCACGGTCAATTGGGATCCGGTCGACCAGACCGTACTCGCCAAC
GAGCAGGTGATCGACGGGCGCGGCTGGCGCTCCGGCGCGCTGATCGAGAAGCGCGAGATCCCGATGTACTAC
TTCAAGATCACCGCCTACGCCGAGGAACTGCTGGAGAGCCTCGACAACCTGCCCGGCTGGCCGGAGCAGGTG
AAGACCATGCAGCGCAACTGGATCGGCAAGTCGCGTGGGATGGAGATCGGCTTCCCCTACGACCAGGCCTCC
ATCGGCCACGCCGGCCAACTGAAGGTGTTCACCACCCGTCCGGACACCCTGATGGGCGCCACCTACGTCGCC
GTCGCCGCCGAACACCCGCTGGCCACCCAGGCCGCGCAGAACGACCCGCAGTTGCAGGCGTTCATCGACGAA
TGCAAGCGCGGCGGCGTCGCCGAGGCCGACATCGCCACCCAGGAGAAGAAAGGCATGGCCACTTCCCTGTTC
GTCGAACACCCGCTGACCGGCGACAAGCTGCCGGTATGGGTCGCCAACTACGTGCTGATGAACTACGGCGAA
GGCGCGGTGATGGCGGTGCCCGGCCATGACGAGCGCGACTTCGAGTTCGCCAACAAGTACGGCCTGCCGATC
CGCCAGGTGATCGCCAAGGTCGAGGGCGACGACGACTTCGAGTCCAGCGTCTGGAAGGAGTGGTACGGCGCC
AAGGACGAGTCCGTGCTCACCGTCAACTCCGGCAAGTACGACAACCTCGGCTACCAGGCCGCCTTCGACGCC
ATCGGCGCCGACCTCGAGGCCAAGGGCCTGGGCCAGGCGCGCACCCAGTTCCGCCTGCGCGACTGGGGCATC
AGCCGCCAGCGCTACTGGGGCTGCCCGATCCCGATCATCCACTGCGAGGCTTGCGGCGACGTCCCGGTGCCA
GCCGACCAGTTGCCGGTGGTGCTGCCGGAAGACGTGGTACCGGACGGCTCCGGTTCGCCGCTGGCGAAGATG
CCGGAATTCTACGAATGCAGCTGCCCGAAATGCGGCCAGCCGGCCAAGCGCGAAACCGACACCATGGACACC
TTCGTCGAGTCGTCCTGGTATTTCGCCCGCTACGCCTGCCCGCAGTTCGAAGGCGGCATGCTGGACAGGAAG
GCGGCCGACTACTGGCTGCCGGTCGACCAGTACATCGGCGGCATCGAGCACGCCATCCTGCACCTGCTCTAT
GCGCGCTTCTTCCACAAGCTGATGCGCGACGAGGGCCTGGTCGGCAGCGACGAGCCGTTCAAGAACCTGCTG
ACCCAGGGCATGGTGGTCGCCGATACCTACTACCGGACCACCGCCAACGGCGGCAAGGACTGGTTCAACCCG
GCCGACGTCGAGGTCGAGCGTGACGCCAAGGCCAAGGTCGTCGGCGCACGCCTGAAGAGCGACGGCCAGCCG
GTCGAGATCGGCGGCACCGAGAAGATGTCGAAGTCGAAGAACAACGGCGTCGACCCGCAATCGATGATCGAC
CAGTACGGTGCCGATACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGCCGGACATGAGCCTGGAGTGGTCG
GACGCCGGCGTCGAGGGCGCCAACCGCTTCCTCCGCCGCGTCTGGCGCCTGGCTCACGCCCATGTCAGCGCC
GGCCTCCCCGGCGCGCTGGACGTCGCCGCCCTGGACGACGCGCAGAAGCAGGTCCGCCGCGCCATCCACCTG
GCGATCAGGCAGGCCAGCCAGGATGTCGGCCAGCACCACAAGTTCAACACCGCCATCGCCGCGGTGATGACC
CTGATGAACGTGCTGGAGAAGGCGCCGAACCAGGACGCCCAGGACCGCGCCCTGATCCAGGAAGGCCTGGAA
ACCGTGGTCCTGCTGCTGGCGCCCATCACTCCGCACATCTGCCACGTGCTCTGGGGCCAGCTCGGCCATGCC
GAAGCGGTGATCGATGCGCGCTGGCCGAGCGTCGACGAGAGCGCACTGGTGCAGGACACCCTGCAACTGGTG
GTGCAGGTCAACGGCAAGCTGCGCGGGCACATCGACGTGGCCGCCAGCGCCAGCCGCGAGGATGTCGAGGCC
GCCGCGCGCGCCAACGAGAACGTGCTGCGTTTCACCGAAGGCCTGAGCATCCGCAAGGTCATCGTGGTACCG
GGCAAACTGGTCAACATCGTCGCCAACTGA
Translation:
MHEQYQPLEIETQAQNYWKEHQSFLVRELPDKEKFYCLSMFPYPSGKLHMGHVRNYTIGDVISRYHRMQGRN
VLQPMGWDAFGMPAENAAMKNNVAPAAWTYDNIAYMKSQLDSLGLAIDWSREVTTCKPDYYRWEQWLFTRLF
EKGVIYRKNGTVNWDPVDQTVLANEQVIDGRGWRSGALIEKREIPMYYFKITAYAEELLESLDNLPGWPEQV
KTMQRNWIGKSRGMEIGFPYDQASIGHAGQLKVFTTRPDTLMGATYVAVAAEHPLATQAAQNDPQLQAFIDE
CKRGGVAEADIATQEKKGMATSLFVEHPLTGDKLPVWVANYVLMNYGEGAVMAVPGHDERDFEFANKYGLPI
RQVIAKVEGDDDFESSVWKEWYGAKDESVLTVNSGKYDNLGYQAAFDAIGADLEAKGLGQARTQFRLRDWGI
SRQRYWGCPIPIIHCEACGDVPVPADQLPVVLPEDVVPDGSGSPLAKMPEFYECSCPKCGQPAKRETDTMDT
FVESSWYFARYACPQFEGGMLDRKAADYWLPVDQYIGGIEHAILHLLYARFFHKLMRDEGLVGSDEPFKNLL
TQGMVVADTYYRTTANGGKDWFNPADVEVERDAKAKVVGARLKSDGQPVEIGGTEKMSKSKNNGVDPQSMID
QYGADTCRLFMMFASPPDMSLEWSDAGVEGANRFLRRVWRLAHAHVSAGLPGALDVAALDDAQKQVRRAIHL
AIRQASQDVGQHHKFNTAIAAVMTLMNVLEKAPNQDAQDRALIQEGLETVVLLLAPITPHICHVLWGQLGHA
EAVIDARWPSVDESALVQDTLQLVVQVNGKLRGHIDVAASASREDVEAAARANENVLRFTEGLSIRKVIVVP
GKLVNIVAN*
AnnotationID:120GeneID:110
AnnotatorUID: urbach
Modification Date/Time: 2004-09-01 12:12:13
Gene Name:leuS
Confidence Code:2
GeneProduct:leucyl-tRNA synthetase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
dbj|BAB34103.1|  (AP002552) leucine tRNA synthetase [Escherichia coli O157:H7]
Length: 877
PctIdentity: 57.46
PctSimilarity: 72.17
Gaps: 21
BitScore: 2675.0






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:223




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17365




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34099




  
Author/Investigator(s):
        Morgan S, Larossa R, Cheung A, Low B, Soll D.





  
Title:
        Regulation of biosynthesis of aminoacyl-transfer RNA synthetases and of transfer-RNA in Escherichia coli.




  
PubMed:
        45219


MedLine:
        




    
Source:
Arch Biol Med Exp (Santiago). 1979 Oct;12(3):415-26.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=45219









           
Homologs By Global Alignment 

           

       



     
Gene ID:110
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
208
                           PA3987_tr
                           translation of PA3987
                           873
                           99.65
                           99.88
                           0
                           4637.0
     

     
     
15364
                           gb|AAG07374.1|AE004816_10
                           (AE004816) leucyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
                           873
                           99.65
                           99.88
                           0
                           4637.0
     

     
     
15365
                           gb|AAN70363.1|AE016678_4
                           (AE016792) leucyl-tRNA synthetase [Pseudomonas putida KT2440]
                           873
                           81.21
                           88.65
                           5
                           3821.0
     

     
     
15366
                           gb|AAO58241.1|
                           (AE016873) leucyl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000]
                           873
                           79.83
                           87.74
                           5
                           3741.0
     

     
     
15367
                           gb|AAQ58182.1|
                           (AE016911) leucyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472]
                           873
                           69.64
                           81.21
                           1
                           3313.0
     

     






      

          
GC ORFID: 43112How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3987Glimmer Score: 

          
Start: 3895907Stop: 3898528

          
Length: 2622


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3987 translation of PA3987Homolog Bit Score 1790.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5732 (ORF: BLASTX 1450.0), t_PA3987 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACGAGCAATATCAGCCACTCGAGATCGAAACCCAGGCCCAGAACTACTGGAAAGAACACCAGTCCTTC 
CTCGTCAGGGAGCTACCCGACAAGGAGAAGTTCTACTGCCTGTCGATGTTCCCGTATCCGAGCGGCAAGCTG 
CACATGGGCCACGTGCGCAACTACACCATCGGCGACGTGATCAGCCGCTACCACCGCATGCAGGGCCGCAAC 
GTGCTGCAGCCGATGGGCTGGGACGCGTTCGGCATGCCGGCGGAAAACGCCGCGATGAAGAACAACGTCGCC 
CCGGCGGCCTGGACCTACGACAACATCGCCTACATGAAGTCGCAGTTGGACAGCCTCGGCCTGGCGATCGAC 
TGGAGCCGCGAGGTCACCACCTGCAAGCCGGACTACTACCGCTGGGAGCAGTGGCTGTTCACCCGCCTGTTC 
GAAAAAGGGGTGATCTACCGCAAGAACGGCACGGTCAATTGGGATCCGGTCGACCAGACCGTACTCGCCAAC 
GAGCAGGTGATCGACGGGCGCGGCTGGCGCTCCGGCGCGCTGATCGAGAAGCGCGAGATCCCGATGTACTAC 
TTCAAGATCACCGCCTACGCCGAGGAACTGCTGGAGAGCCTCGACAACCTGCCCGGCTGGCCGGAGCAGGTG 
AAGACCATGCAGCGCAACTGGATCGGCAAGTCGCGTGGGATGGAGATCGGCTTCCCCTACGACCAGGCCTCC 
ATCGGCCACGCCGGCCAACTGAAGGTGTTCACCACCCGTCCGGACACCCTGATGGGCGCCACCTACGTCGCC 
GTCGCCGCCGAACACCCGCTGGCCACCCAGGCCGCGCAGAACGACCCGCAGTTGCAGGCGTTCATCGACGAA 
TGCAAGCGCGGCGGCGTCGCCGAGGCCGACATCGCCACCCAGGAGAAGAAAGGCATGGCCACTTCCCTGTTC 
GTCGAACACCCGCTGACCGGCGACAAGCTGCCGGTATGGGTCGCCAACTACGTGCTGATGAACTACGGCGAA 
GGCGCGGTGATGGCGGTGCCCGGCCATGACGAGCGCGACTTCGAGTTCGCCAACAAGTACGGCCTGCCGATC 
CGCCAGGTGATCGCCAAGGTCGAGGGCGACGACGACTTCGAGTCCAGCGTCTGGAAGGAGTGGTACGGCGCC 
AAGGACGAGTCCGTGCTCACCGTCAACTCCGGCAAGTACGACAACCTCGGCTACCAGGCCGCCTTCGACGCC 
ATCGGCGCCGACCTCGAGGCCAAGGGCCTGGGCCAGGCGCGCACCCAGTTCCGCCTGCGCGACTGGGGCATC 
AGCCGCCAGCGCTACTGGGGCTGCCCGATCCCGATCATCCACTGCGAGGCTTGCGGCGACGTCCCGGTGCCA 
GCCGACCAGTTGCCGGTGGTGCTGCCGGAAGACGTGGTACCGGACGGCTCCGGTTCGCCGCTGGCGAAGATG 
CCGGAATTCTACGAATGCAGCTGCCCGAAATGCGGCCAGCCGGCCAAGCGCGAAACCGACACCATGGACACC 
TTCGTCGAGTCGTCCTGGTATTTCGCCCGCTACGCCTGCCCGCAGTTCGAAGGCGGCATGCTGGACAGGAAG 
GCGGCCGACTACTGGCTGCCGGTCGACCAGTACATCGGCGGCATCGAGCACGCCATCCTGCACCTGCTCTAT 
GCGCGCTTCTTCCACAAGCTGATGCGCGACGAGGGCCTGGTCGGCAGCGACGAGCCGTTCAAGAACCTGCTG 
ACCCAGGGCATGGTGGTCGCCGATACCTACTACCGGACCACCGCCAACGGCGGCAAGGACTGGTTCAACCCG 
GCCGACGTCGAGGTCGAGCGTGACGCCAAGGCCAAGGTCGTCGGCGCACGCCTGAAGAGCGACGGCCAGCCG 
GTCGAGATCGGCGGCACCGAGAAGATGTCGAAGTCGAAGAACAACGGCGTCGACCCGCAATCGATGATCGAC 
CAGTACGGTGCCGATACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGCCGGACATGAGCCTGGAGTGGTCG 
GACGCCGGCGTCGAGGGCGCCAACCGCTTCCTCCGCCGCGTCTGGCGCCTGGCTCACGCCCATGTCAGCGCC 
GGCCTCCCCGGCGCGCTGGACGTCGCCGCCCTGGACGACGCGCAGAAGCAGGTCCGCCGCGCCATCCACCTG 
GCGATCAGGCAGGCCAGCCAGGATGTCGGCCAGCACCACAAGTTCAACACCGCCATCGCCGCGGTGATGACC 
CTGATGAACGTGCTGGAGAAGGCGCCGAACCAGGACGCCCAGGACCGCGCCCTGATCCAGGAAGGCCTGGAA 
ACCGTGGTCCTGCTGCTGGCGCCCATCACTCCGCACATCTGCCACGTGCTCTGGGGCCAGCTCGGCCATGCC 
GAAGCGGTGATCGATGCGCGCTGGCCGAGCGTCGACGAGAGCGCACTGGTGCAGGACACCCTGCAACTGGTG 
GTGCAGGTCAACGGCAAGCTGCGCGGGCACATCGACGTGGCCGCCAGCGCCAGCCGCGAGGATGTCGAGGCC 
GCCGCGCGCGCCAACGAGAACGTGCTGCGTTTCACCGAAGGCCTGAGCATCCGCAAGGTCATCGTGGTACCG 
GGCAAACTGGTCAACATCGTCGCCAACTGA