ViewGene
Locus Name:
GeneID:
Location:

GeneID:1090
TrivialName: PA14_01750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01750
PAO1 Ortholog Locus:PA0142
Sequence Length:1350
Protein Length:449
Start: 159868
Stop: 161217
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03532.1|AE004452_4 (AE004452) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 444/449 (98%), Positives = 447/449 (99%)
Sequence:
ATGTCCCGCACCTGGATTCGCAAACCCCTCGCCATCTTCACCGCCAACGGTCTCGACGCCGCCGGCGGCCTG
GTCGTCGAAGACGGCCGCATCGTCGAGCTGCTCGGCGCCGGCCAGCAGCCCGCGCAGCCCTGCGCCAGCCAG
TTCGACGCCAGCCGGCACGTGGTCTTGCCGGGACTCATCAACACCCATCACCACTTCTACCAGACCCTCACC
CGCGCCTGGGCGCCGGTGGTCAACCAGCCGCTGTTCCCCTGGCTGAAAACCCTCTACCCGGTCTGGGCGCGG
CTGACCCCGGAGAAGCTCGAACTGGCCACCAAGGTGGCGCTGGCCGAGCTGCTGCTGTCTGGCTGCACCACT
GCCGCCGACCACCACTACCTGTTCCCCGGCGGCCTCGAACAGGCTATCGACGTGCAGGCCGGGGTGGTCGAG
GAACTGGGCATGCGCGCCATGCTCACCCGCGGCTCGATGAGCCTCGGCGAGAAGGACGGCGGCTTGCCGCCG
CAGCAGACGGTGCAGGAGGCCGAGACCATCCTCGCCGACAGCGAGCGACTGATCGCTCGCTACCACCAGCGC
GGCGAAGGCGCCCGGGTGCAGATCGCCCTGGCGCCCTGCTCGCCGTTCTCGGTGACTCCGGAGATCATGCGC
GCCAGCGCCGAACTGGCGGCGCGCCATGACGTACGCCTGCACACCCACCTGGCGGAGACCCTCGACGAGGAA
GACTTCTGCCTGCAGCGCTTCGGCCTGCGCACCGTGGACTACCTGGATAGCGTCGGCTGGCTCGGCCCGCGC
ACCTGGCTGGCCCACGGCATCCACTTCAACGCCGAGGAGATCCGCCGGCTCGGCGAGGCGGGCACCGGTATC
TGCCATTGCCCGAGTTCGAACATGCGCCTGGCCTCGGGCATCTGCCCGACCGTGGAGCTGGAGGCGGCCGGC
GCGCCGATTGGCCTGGGAGTCGATGGTTCGGCCTCCAACGACGCCTCGAACATGATCCTCGAGGCGCGCCAG
GCCCTGTACCTGCAACGCCTGCGCTACGGCGCCGAGCGAATCACCCCGGAACTCGCCCTGGGCTGGGCCACC
CGTGGCTCGGCACGCCTGCTCGGACGCAGCGACATCGGCGAGCTGGCCCCCGGCAAGCAGGCCGACCTGGCC
TTGTTCAAGCTCGACGAGCTGCGCTTCTCGGGTAGCCACGACCCGCTCTCGGCGCTGCTGCTGTGCGCTGCC
GACCGTGCCGACCGGGTAATGGTCGGCGGCGCCTGGCGAGTGGTCGATGGTGCCGTGGAAGGGCTCGACCTG
GCCGCCCTGATCGCCCGCCACCGCGAGGCGGCGAGCGCCCTGATCGCCGGGTGA
Translation:
MSRTWIRKPLAIFTANGLDAAGGLVVEDGRIVELLGAGQQPAQPCASQFDASRHVVLPGLINTHHHFYQTLT
RAWAPVVNQPLFPWLKTLYPVWARLTPEKLELATKVALAELLLSGCTTAADHHYLFPGGLEQAIDVQAGVVE
ELGMRAMLTRGSMSLGEKDGGLPPQQTVQEAETILADSERLIARYHQRGEGARVQIALAPCSPFSVTPEIMR
ASAELAARHDVRLHTHLAETLDEEDFCLQRFGLRTVDYLDSVGWLGPRTWLAHGIHFNAEEIRRLGEAGTGI
CHCPSSNMRLASGICPTVELEAAGAPIGLGVDGSASNDASNMILEARQALYLQRLRYGAERITPELALGWAT
RGSARLLGRSDIGELAPGKQADLALFKLDELRFSGSHDPLSALLLCAADRADRVMVGGAWRVVDGAVEGLDL
AALIARHREAASALIAG*
AnnotationID:1099GeneID:1090
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 06:06:35
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA0142
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0402
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54307.1| (AE016858) hydroxydechloroatrazine ethylaminohydrolase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 451

 Score =  759 bits (1960), Expect = 0.0
 Identities = 369/448 (82%), Positives = 399/448 (89%)

>gb|AAN68192.1|AE016452_5 (AE016783) chlorohydrolase family protein [Pseudomonas putida
           KT2440]
          Length = 465

 Score =  380 bits (976), Expect = e-105
 Identities = 190/429 (44%), Positives = 271/429 (63%), Gaps = 4/429 (0%)








 
Structural Features:
COG0402, SsnA, Cytosine deaminase and related metal-dependent hydrolases 
[Nucleotide transport and metabolism]
CD-Length = 421 residues, 100.0% aligned
Score =  273 bits (698), Expect = 4e-74
Identities = 157/440 (35%), Positives = 223/440 (50%), Gaps = 24/440 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2183




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19325




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33513




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1090_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1090
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1963
                           PA0142_tr
                           translation of PA0142
                           449
                           98.88
                           99.55
                           0
                           2303.0
     

     
     
67083
                           gb|AAG03532.1|AE004452_4
                           (AE004452) hypothetical protein PA0142 [Pseudomonas aeruginosa PAO1]
                           449
                           98.88
                           99.55
                           0
                           2303.0
     

     
     
67084
                           gb|AAO54307.1|
                           (AE016858) hydroxydechloroatrazine ethylaminohydrolase [Pseudomonas syringae pv. tomato str. DC3000]
                           451
                           81.81
                           88.47
                           2
                           1959.0
     

     
     
67085
                           dbj|BAC51424.1|
                           (AP005957) bll6159 [Bradyrhizobium japonicum USDA 110]
                           459
                           61.65
                           74.50
                           14
                           1479.0
     

     
     
67089
                           dbj|BAC69728.1|
                           (AP005029) putative hydrolase [Streptomyces avermitilis MA-4680]
                           467
                           43.25
                           57.60
                           26
                           887.0
     

     






      

          
GC ORFID: 44092How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0142Glimmer Score: 

          
Start: 5961207Stop: 5962556

          
Length: 1350


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0142 translation of PA0142Homolog Bit Score 891.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3596 (ORF: BLASTX 758.0), t_PA0142 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCGCACCTGGATTCGCAAACCCCTCGCCATCTTCACCGCCAACGGTCTCGACGCCGCCGGCGGCCTG 
GTCGTCGAAGACGGCCGCATCGTCGAGCTGCTCGGCGCCGGCCAGCAGCCCGCGCAGCCCTGCGCCAGCCAG 
TTCGACGCCAGCCGGCACGTGGTCTTGCCGGGACTCATCAACACCCATCACCACTTCTACCAGACCCTCACC 
CGCGCCTGGGCGCCGGTGGTCAACCAGCCGCTGTTCCCCTGGCTGAAAACCCTCTACCCGGTCTGGGCGCGG 
CTGACCCCGGAGAAGCTCGAACTGGCCACCAAGGTGGCGCTGGCCGAGCTGCTGCTGTCTGGCTGCACCACT 
GCCGCCGACCACCACTACCTGTTCCCCGGCGGCCTCGAACAGGCTATCGACGTGCAGGCCGGGGTGGTCGAG 
GAACTGGGCATGCGCGCCATGCTCACCCGCGGCTCGATGAGCCTCGGCGAGAAGGACGGCGGCTTGCCGCCG 
CAGCAGACGGTGCAGGAGGCCGAGACCATCCTCGCCGACAGCGAGCGACTGATCGCTCGCTACCACCAGCGC 
GGCGAAGGCGCCCGGGTGCAGATCGCCCTGGCGCCCTGCTCGCCGTTCTCGGTGACTCCGGAGATCATGCGC 
GCCAGCGCCGAACTGGCGGCGCGCCATGACGTACGCCTGCACACCCACCTGGCGGAGACCCTCGACGAGGAA 
GACTTCTGCCTGCAGCGCTTCGGCCTGCGCACCGTGGACTACCTGGATAGCGTCGGCTGGCTCGGCCCGCGC 
ACCTGGCTGGCCCACGGCATCCACTTCAACGCCGAGGAGATCCGCCGGCTCGGCGAGGCGGGCACCGGTATC 
TGCCATTGCCCGAGTTCGAACATGCGCCTGGCCTCGGGCATCTGCCCGACCGTGGAGCTGGAGGCGGCCGGC 
GCGCCGATTGGCCTGGGAGTCGATGGTTCGGCCTCCAACGACGCCTCGAACATGATCCTCGAGGCGCGCCAG 
GCCCTGTACCTGCAACGCCTGCGCTACGGCGCCGAGCGAATCACCCCGGAACTCGCCCTGGGCTGGGCCACC 
CGTGGCTCGGCACGCCTGCTCGGACGCAGCGACATCGGCGAGCTGGCCCCCGGCAAGCAGGCCGACCTGGCC 
TTGTTCAAGCTCGACGAGCTGCGCTTCTCGGGTAGCCACGACCCGCTCTCGGCGCTGCTGCTGTGCGCTGCC 
GACCGTGCCGACCGGGTAATGGTCGGCGGCGCCTGGCGAGTGGTCGATGGTGCCGTGGAAGGGCTCGACCTG 
GCCGCCCTGATCGCCCGCCACCGCGAGGCGGCGAGCGCCCTGATCGCCGGGTGA