ViewGene
Locus Name:
GeneID:
Location:

GeneID:1089
TrivialName: PA14_10870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10870
PAO1 Ortholog Locus:PA4099
Sequence Length:1305
Protein Length:434
Start: 941890
Stop: 940586
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07486.1|AE004826_4 (AE004826) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 433/434 (99%), Positives = 434/434 (100%)
Sequence:
ATGAAAACCCTCCGCACCTTGCCGGCGCTGCTCTGCGCCGGTTTCCTCGGTCTCTCCGCGCAGGCCGCCGAA
GACAGCCGCAGCGGCCCGCTGGCCGGGTTCGGCGAACGACTCCAGCGCCACGGCGTGAAGACCCACGCGCAG
TTCTGGAGCCTGTCGCTGAAGAACCTCGACACCGGCCCGCGCCAGCACAGCTTCGGCAACAGCGGCGACCTG
TTCCTCGGCGCCGACCTCGACCTCGCCACCCTCGCCGGCCTGGACGGCGCCTCGCTGCACATCGAGGAAACC
CTGTTCATCCTCGACCGCGGCACCGGTCAGCCCACCGGGCCGAGCTGGCAGGGCGCGGTGGGCAGCTACTTC
GGCGGCGCGCCGCTGCACAACGACATCGGCGCCAACCAGCTGAGCCTGCTCACCTGGCAGCAGCAGTGGCTG
GGCGGACGCCTCGACAGCCATCTCGGACGCACCAATGCGCGGCGCTATTTCCTGATCTACAACTGCGAGACC
GTGGTCACCTGCAATGACCCGATCATCGACGCCTCCACCGGCATCCTGCCGCCGCCCTACGGCGCCTGGGGC
GGCTACCTGAAGTACCGGGCGACCCCGACCCTGTACCTGCACGCCGGGGCCTTCGAGTCCAACCCGGTGGAT
TACCTGAAGAAGCGCCATGGCCTCGATTTCGGCACCGACGACGCCAGCGGCACCAGCCTGCTGCTGGGGATC
GGCGACAAGCGCGAGGAAAGCCTCGATCCCTATCGCTCGCACTATGAACTCAATGCCTACCTGAACACCGCC
AACCAGGTCGACCCGCTCACCGGCGCCAGCGACCACGGCAGCGCCGGCGGCTTCTTCAAGTTCCAGCAGCTG
TTCTGGCGCGCCGACGGCGGCCGCCTCGATTCGCCGAGGGCGCTGGGGCTGTTCGGCTCGCTGTCGGTATCA
GCCGACGACAAGCAGCCGTTCCGTCATTTCGCCGAGCTGGGCATGACCTACCATGCACCCTTCGACCGCACG
CGGGACAAGCTCAACCTCAAGGCCAGCTACCTGCGCCTGAACGATCACCAGCTGGAGTTCCAGCGCCAGGCG
CGGATCGCCGCTGGCGGCGATGCGAAACTCGGCCAGCGCGACGTGTACGCCCTGGAAACCAATGCGCACATC
GCACTGACCCCGCACATCGCGCTGGAGCCGTCGGTGCAGTACATCTTCAACCCGGACAACTACTACAACCCC
GGCGCTCGCGAACTGAGTGGAGACGGTTTCGTCGTCGGCCTGCAACTGATGGTCGACATGGGCTCGCTGCTG
GGGCTTTAG
Translation:
MKTLRTLPALLCAGFLGLSAQAAEDSRSGPLAGFGERLQRHGVKTHAQFWSLSLKNLDTGPRQHSFGNSGDL
FLGADLDLATLAGLDGASLHIEETLFILDRGTGQPTGPSWQGAVGSYFGGAPLHNDIGANQLSLLTWQQQWL
GGRLDSHLGRTNARRYFLIYNCETVVTCNDPIIDASTGILPPPYGAWGGYLKYRATPTLYLHAGAFESNPVD
YLKKRHGLDFGTDDASGTSLLLGIGDKREESLDPYRSHYELNAYLNTANQVDPLTGASDHGSAGGFFKFQQL
FWRADGGRLDSPRALGLFGSLSVSADDKQPFRHFAELGMTYHAPFDRTRDKLNLKASYLRLNDHQLEFQRQA
RIAAGGDAKLGQRDVYALETNAHIALTPHIALEPSVQYIFNPDNYYNPGARELSGDGFVVGLQLMVDMGSLL
GL*
AnnotationID:1098GeneID:1089
AnnotatorUID: diggins
Modification Date/Time: 2005-06-07 20:08:25
Gene Name:
Confidence Code:3
GeneProduct:putative porin
Cell Localization:()
Synonyms:PA4099
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3659,pfam04966
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3659, OprB, Carbohydrate-selective porin 
[Cell envelope biogenesis, outer membrane]
CD-Length = 439 residues,  98.6% aligned
Score =  443 bits (1140), Expect = 2e-125
Identities = 171/448 (38%), Positives = 208/448 (46%), Gaps = 35/448 (7%)

pfam04966, OprB, Carbohydrate-selective porin, OprB family.
CD-Length = 355 residues, 100.0% aligned
Score =  329 bits (844), Expect = 5e-91
Identities = 140/370 (37%), Positives = 186/370 (50%), Gaps = 30/370 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2181




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19323




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36841




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1089_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1089
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1962
                           PA4099_tr
                           translation of PA4099
                           434
                           99.76
                           99.99
                           0
                           2302.0
     

     
     
67081
                           gb|AAG07486.1|AE004826_4
                           (AE004826) hypothetical protein PA4099 [Pseudomonas aeruginosa PAO1]
                           434
                           99.76
                           99.99
                           0
                           2302.0
     

     
     
67082
                           gb|AAO56542.1|
                           (AE016866) conserved domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           437
                           40.27
                           47.13
                           187
                           947.0
     

     






      

          
GC ORFID: 44091How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4099Glimmer Score: 

          
Start: 4012047Stop: 4013351

          
Length: 1305


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4099 translation of PA4099Homolog Bit Score 891.0

          
Other Homologs:  t_PA4099 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACCCTCCGCACCTTGCCGGCGCTGCTCTGCGCCGGTTTCCTCGGTCTCTCCGCGCAGGCCGCCGAA 
GACAGCCGCAGCGGCCCGCTGGCCGGGTTCGGCGAACGACTCCAGCGCCACGGCGTGAAGACCCACGCGCAG 
TTCTGGAGCCTGTCGCTGAAGAACCTCGACACCGGCCCGCGCCAGCACAGCTTCGGCAACAGCGGCGACCTG 
TTCCTCGGCGCCGACCTCGACCTCGCCACCCTCGCCGGCCTGGACGGCGCCTCGCTGCACATCGAGGAAACC 
CTGTTCATCCTCGACCGCGGCACCGGTCAGCCCACCGGGCCGAGCTGGCAGGGCGCGGTGGGCAGCTACTTC 
GGCGGCGCGCCGCTGCACAACGACATCGGCGCCAACCAGCTGAGCCTGCTCACCTGGCAGCAGCAGTGGCTG 
GGCGGACGCCTCGACAGCCATCTCGGACGCACCAATGCGCGGCGCTATTTCCTGATCTACAACTGCGAGACC 
GTGGTCACCTGCAATGACCCGATCATCGACGCCTCCACCGGCATCCTGCCGCCGCCCTACGGCGCCTGGGGC 
GGCTACCTGAAGTACCGGGCGACCCCGACCCTGTACCTGCACGCCGGGGCCTTCGAGTCCAACCCGGTGGAT 
TACCTGAAGAAGCGCCATGGCCTCGATTTCGGCACCGACGACGCCAGCGGCACCAGCCTGCTGCTGGGGATC 
GGCGACAAGCGCGAGGAAAGCCTCGATCCCTATCGCTCGCACTATGAACTCAATGCCTACCTGAACACCGCC 
AACCAGGTCGACCCGCTCACCGGCGCCAGCGACCACGGCAGCGCCGGCGGCTTCTTCAAGTTCCAGCAGCTG 
TTCTGGCGCGCCGACGGCGGCCGCCTCGATTCGCCGAGGGCGCTGGGGCTGTTCGGCTCGCTGTCGGTATCA 
GCCGACGACAAGCAGCCGTTCCGTCATTTCGCCGAGCTGGGCATGACCTACCATGCACCCTTCGACCGCACG 
CGGGACAAGCTCAACCTCAAGGCCAGCTACCTGCGCCTGAACGATCACCAGCTGGAGTTCCAGCGCCAGGCG 
CGGATCGCCGCTGGCGGCGATGCGAAACTCGGCCAGCGCGACGTGTACGCCCTGGAAACCAATGCGCACATC 
GCACTGACCCCGCACATCGCGCTGGAGCCGTCGGTGCAGTACATCTTCAACCCGGACAACTACTACAACCCC 
GGCGCTCGCGAACTGAGTGGAGACGGTTTCGTCGTCGGCCTGCAACTGATGGTCGACATGGGCTCGCTGCTG 
GGGCTTTAG