ViewGene
Locus Name:
GeneID:
Location:

GeneID:1084
TrivialName: PA14_03800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03800
PAO1 Ortholog Locus:PA0291
Sequence Length:1392
Protein Length:463
Start: 341437
Stop: 342828
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03680.1|AE004467_2 (AE004467) Anaerobically-induced outer membrane porin OprE precursor [Pseudomonas aeruginosa PAO1]
Identities = 443/463 (95%), Positives = 451/463 (97%), Gaps = 3/463 (0%)
Sequence:
ATGAAGAGTCGCAAGATCAACAAGTCACGACTGGCCCTGGCCATCACTGCCGGTACCCTCGGTGCCCTGGCG
CAACAGGCGGTCGCCGCCGGTTTCATCGAGGACAGCAAGGCATCGCTGACCCTGCGCAACTTCTACATCAAT
ACCGACAACCGCAATGGCAGCGCCTCGCCGAGCAAGCAGGAAGAGTGGGGCCAGGGCTTCATCCTGAATTAC
CAGTCGGGCTTCACCCAGGGCACCGTCGGCTTCGGCGTCGACGCGCTGGGCCTGCTCGGCGTGCGCCTGGAC
GGCGGCGGCCGTGCCGGCAAGAGCGGCCTGGGCCTGGACCGCCAGCCGGGCACCGTGTTCCCGCTGGAAAGC
AACGGTGAGCCGGTGCACGACTTCGCCAGCCTGGGCCTGACCGCCAAGGCCAAGGTATCCAACACCGAGTTC
CGCTATGGCACCCTGCAGCCGAAGCTGCCGGTGGTCACCTACAACGACGGCCGCCTGCTGCCGGTCACCTTC
GAGGGCGGCCAGGTCACCTCGACCGACCTCAAGGACTTCACCCTGGTTGCCGGCCAACTGGAACACTCCAAG
GGCCGTAACTCCACCGACAACCGCAGCCTGAGCATCGCCGGCGCCAACGGCAGCAGCGCCGGCTCGCGCGAC
AGCAACAAGTTCTACTACGCGGGTGGCGACTACAAGGTCAACAAGGACCTGACCCTGCAGTACTACTACGGC
AACCTGGACGACTTCTACAAGCAGCACTTCCTCGGCCTGATCCACAACTGGCAGATCGGCCCGGGCGTCCTG
AAGACCGACCTGCGCGCCTTCGACAGCAGCTCCGACGGCAAGAACGGCAGCCGTTCCGGCCGTGCCGACGGC
TACGTCAGCAGCGGCTACTACGGCAGCGGCGTGACCAAGGGCGAAGTCGACAACCGCGCCTTCAGCGGTCTC
TTCACCTATACCGTCAGCGGCCACAGCATCGGCGCCGGTTACCAGATCCTCAACGGCGACAGCGACTTCCCG
TTCCTGAACCGTGGCGATGGCGAAGGTTCCACCGCGTACCTGATCACCGACGTGCAGATCGGCAAATTCCAG
CGCGCCGGCGAGCGCACCTGGCAGGTCCGCTACGGCTACGACTTCGCTGGCCTCGGCCTGCCGGGCCTGACC
TTCAACACCATGTACCTCAAGGGCGACAACATCAAGTCCGGGCGCGGCGACCAGAGCGAGTGGGAGCGTGAC
ATCGCCCTAGCCTATGTGATCCCGGACGGTACCTTCAAAGGGCTGGGCTTCACCTGGAAGAACGCTTCGTTC
CGCACCGGTCTGCCGGTGTCCGGCTCGGGCACTGCGACCCAGCGCGACCAGGACGAGAACCGCCTGATCGTC
AGCTACACCCTGCCGCTGCTGTAA
Translation:
MKSRKINKSRLALAITAGTLGALAQQAVAAGFIEDSKASLTLRNFYINTDNRNGSASPSKQEEWGQGFILNY
QSGFTQGTVGFGVDALGLLGVRLDGGGRAGKSGLGLDRQPGTVFPLESNGEPVHDFASLGLTAKAKVSNTEF
RYGTLQPKLPVVTYNDGRLLPVTFEGGQVTSTDLKDFTLVAGQLEHSKGRNSTDNRSLSIAGANGSSAGSRD
SNKFYYAGGDYKVNKDLTLQYYYGNLDDFYKQHFLGLIHNWQIGPGVLKTDLRAFDSSSDGKNGSRSGRADG
YVSSGYYGSGVTKGEVDNRAFSGLFTYTVSGHSIGAGYQILNGDSDFPFLNRGDGEGSTAYLITDVQIGKFQ
RAGERTWQVRYGYDFAGLGLPGLTFNTMYLKGDNIKSGRGDQSEWERDIALAYVIPDGTFKGLGFTWKNASF
RTGLPVSGSGTATQRDQDENRLIVSYTLPLL*
AnnotationID:1093GeneID:1084
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 06:06:35
Gene Name:oprE
Confidence Code:1
GeneProduct:anaerobically-induced outer membrane porin OprE precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03573
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56420.1| (AE016866) outer membrane porin OprE [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 443

 Score =  483 bits (1244), Expect = e-136
 Identities = 257/456 (56%), Positives = 313/456 (68%), Gaps = 29/456 (6%)

>gb|AAK94920.1|AF402099_1 (AF402099) outer membrane porin [Azotobacter vinelandii]
          Length = 320

 Score =  384 bits (987), Expect = e-106
 Identities = 196/311 (63%), Positives = 240/311 (77%), Gaps = 6/311 (1%)








 
Structural Features:
pfam03573, OprD, outer membrane porin, OprD family. 
CD-Length = 449 residues, 100.0% aligned
Score =  622 bits (1606), Expect = 2e-179
Identities = 292/451 (64%), Positives = 329/451 (72%), Gaps = 19/451 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2171




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19313




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33642




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1084_cdd.html


    		




 
URL:

















    ReferenceID:35437




  
Author/Investigator(s):
        Yamano Y, Nishikawa T, Komatsu Y.





  
Title:
        Cloning and nucleotide sequence of anaerobically induced porin protein E1 (OprE) of Pseudomonas aeruginosa PAO1.




  
PubMed:
        8394980


MedLine:
        




    
Source:
Mol Microbiol. 1993 May;8(5):993-1004.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8394980









           
Homologs By Global Alignment 

           

       



     
Gene ID:1084
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1951
                           PA0291_tr
                           translation of PA0291
                           463
                           95.68
                           97.40
                           3
                           2308.0
     

     
     
66980
                           dbj|BAA02207.1|
                           (D12711) protein E1 [Pseudomonas aeruginosa]
                           463
                           95.68
                           97.40
                           3
                           2308.0
     

     
     
66979
                           gb|AAG03680.1|AE004467_2
                           (AE004467) Anaerobically-induced outer membrane porin OprE precursor [Pseudomonas aeruginosa PAO1]
                           463
                           95.68
                           97.40
                           3
                           2308.0
     

     
     
66981
                           gb|AAO56420.1|
                           (AE016866) outer membrane porin OprE [Pseudomonas syringae pv. tomato str. DC3000]
                           470
                           55.10
                           67.65
                           34
                           1272.0
     

     
     
66982
                           gb|AAN65866.1|AE016215_1
                           (AE016774) porin E [Pseudomonas putida KT2440]
                           479
                           48.43
                           61.37
                           51
                           1064.0
     

     






      

          
GC ORFID: 44086How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0291Glimmer Score: 

          
Start: 6142778Stop: 6144169

          
Length: 1392


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0291 translation of PA0291Homolog Bit Score 892.0

          
Other Homologs:  t_PA0755 (ORF: BLASTX 399.0), t_PA3038 (ORF: BLASTX 360.0), psyr_15may02_Scaffold6_revised_gene6498 (ORF: BLASTX 356.0), t_PA1025 (ORF: BLASTX 327.0), t_PA3588 (ORF: BLASTX 324.0), t_PA2113 (ORF: BLASTX 308.0), t_PA4137 (ORF: BLASTX 304.0), t_PA0291 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGAGTCGCAAGATCAACAAGTCACGACTGGCCCTGGCCATCACTGCCGGTACCCTCGGTGCCCTGGCG 
CAACAGGCGGTCGCCGCCGGTTTCATCGAGGACAGCAAGGCATCGCTGACCCTGCGCAACTTCTACATCAAT 
ACCGACAACCGCAATGGCAGCGCCTCGCCGAGCAAGCAGGAAGAGTGGGGCCAGGGCTTCATCCTGAATTAC 
CAGTCGGGCTTCACCCAGGGCACCGTCGGCTTCGGCGTCGACGCGCTGGGCCTGCTCGGCGTGCGCCTGGAC 
GGCGGCGGCCGTGCCGGCAAGAGCGGCCTGGGCCTGGACCGCCAGCCGGGCACCGTGTTCCCGCTGGAAAGC 
AACGGTGAGCCGGTGCACGACTTCGCCAGCCTGGGCCTGACCGCCAAGGCCAAGGTATCCAACACCGAGTTC 
CGCTATGGCACCCTGCAGCCGAAGCTGCCGGTGGTCACCTACAACGACGGCCGCCTGCTGCCGGTCACCTTC 
GAGGGCGGCCAGGTCACCTCGACCGACCTCAAGGACTTCACCCTGGTTGCCGGCCAACTGGAACACTCCAAG 
GGCCGTAACTCCACCGACAACCGCAGCCTGAGCATCGCCGGCGCCAACGGCAGCAGCGCCGGCTCGCGCGAC 
AGCAACAAGTTCTACTACGCGGGTGGCGACTACAAGGTCAACAAGGACCTGACCCTGCAGTACTACTACGGC 
AACCTGGACGACTTCTACAAGCAGCACTTCCTCGGCCTGATCCACAACTGGCAGATCGGCCCGGGCGTCCTG 
AAGACCGACCTGCGCGCCTTCGACAGCAGCTCCGACGGCAAGAACGGCAGCCGTTCCGGCCGTGCCGACGGC 
TACGTCAGCAGCGGCTACTACGGCAGCGGCGTGACCAAGGGCGAAGTCGACAACCGCGCCTTCAGCGGTCTC 
TTCACCTATACCGTCAGCGGCCACAGCATCGGCGCCGGTTACCAGATCCTCAACGGCGACAGCGACTTCCCG 
TTCCTGAACCGTGGCGATGGCGAAGGTTCCACCGCGTACCTGATCACCGACGTGCAGATCGGCAAATTCCAG 
CGCGCCGGCGAGCGCACCTGGCAGGTCCGCTACGGCTACGACTTCGCTGGCCTCGGCCTGCCGGGCCTGACC 
TTCAACACCATGTACCTCAAGGGCGACAACATCAAGTCCGGGCGCGGCGACCAGAGCGAGTGGGAGCGTGAC 
ATCGCCCTAGCCTATGTGATCCCGGACGGTACCTTCAAAGGGCTGGGCTTCACCTGGAAGAACGCTTCGTTC 
CGCACCGGTCTGCCGGTGTCCGGCTCGGGCACTGCGACCCAGCGCGACCAGGACGAGAACCGCCTGATCGTC 
AGCTACACCCTGCCGCTGCTGTAA