ViewGene
Locus Name:
GeneID:
Location:

GeneID:1058
TrivialName: PA14_59750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59750
PAO1 Ortholog Locus:
Sequence Length:1347
Protein Length:448
Start: 5317504
Stop: 5318850
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84168.1| (AY273869) fimbrial subunit [Pseudomonas aeruginosa]
Identities = 448/448 (100%), Positives = 448/448 (100%)
Sequence:
ATGAAAACATCCCTGCGCGTCCTGCCTCTGCTCCTCGCGCTGCTCGCCTCGTCTAGCTGGGCGACCTGCTAC
AAGGTCACGGCGGTAGGCAACGCCACGACTACCTCCAACACCCAGATACGTCCCGGTGAAGGCTCTGCCGGC
ACCTGGGCCGGAGCCTGCGATACCTGCAACGGTTCCCTCGGTCTACCGAGCGTGATCAACGTCAGCGACGCC
AGCTTCCAGCCCGACGGTAGCTTGATCGCCAGCTCGGTGGCGCCGCTCAGCCAATACGGCGACAGCGCCGGC
TACGACCCAGAGCGCGTGTTCTTCCGCTGTGCTCCAGAGGACGATGTGTACGAGATGTTCTCCACCAATGCC
GACGATCTCTACAGCGGCTGGTACCTAGGAGGCGACAGTGCGGGCAACTCGATTGGCCTGCAGTCCGCCTAT
CGCACCGCCTGGCCCAACGTGCTGCTGCGCCTAACCCACGTGGAAACCGGGCAGTATTTCACCGATGTCTGG
CGCGAGCGTCTGCTCGGCGGGCTCGATATCGACTCGCGAGGCTTTCAACTGGTCAAGGCGAAGAACCTCAGC
GCGGTACGCGCCGAACTGTTCCGCGCTCCGCTGGAGTTCATCCGCTACTACTCGCCGACTACCGCCTCGCGG
TTGTACGCCTACACCCAGCCCGCTGGCTACATCGCCATCAAGGGTCCCGGCCTGGCCTACCCCAACGTCGGC
GCCAGCCATAACGCCAACTACCTCGGCTGGCACTACAACTGGCCGGGCGCCATCGGCCTGTACAACGACGTG
ACGCTCAAGCGCTATCCCACCTGTTCCGTAACCAACGTCACGCCCCACGTTGTGTTCCCGTCGATTTCCCTC
AGTGAGATTAATGCCGGCGCGAACCGTGAGATGCCCTTCGAGGTGGCCTTCAAGTGCCAAACGGGAGTGATC
AACAGCACCGCCTCCAGCGGTACTGCACTGGGTATCAGGGCTTCAGCCGGGGCGCAGGCCGCGTCCGCTGCA
CTGGGCCTGAGGAACGCCAATGGCGGGCTCTCCTACCTAGTTTCCGACCGCTACGGCCAGCCTGGTATGGCC
CAAGGCGTGGGTATCCGCTTGCTGCGCGACGGCAGTGCGATGAACCTGCTGGTAAGCGAGGATTCCGCGATG
GGCAGCAATGCCGAAACACGGGGCTGGTATCCAGTGATCGGCAACGCCTCGAACAAGACTGGCGAAGCGGGA
GGCATCAGCCAGTACAGCGAGACCTTCCGTGCGCGCCTGGAAAAACTCACCGTTGGCAGCATGCCCAGCGTT
ACCCCGGGACGGGTGGAGGCCAGCGCGCAGGTAGTGATTCGTGTCCAGTAA
Translation:
MKTSLRVLPLLLALLASSSWATCYKVTAVGNATTTSNTQIRPGEGSAGTWAGACDTCNGSLGLPSVINVSDA
SFQPDGSLIASSVAPLSQYGDSAGYDPERVFFRCAPEDDVYEMFSTNADDLYSGWYLGGDSAGNSIGLQSAY
RTAWPNVLLRLTHVETGQYFTDVWRERLLGGLDIDSRGFQLVKAKNLSAVRAELFRAPLEFIRYYSPTTASR
LYAYTQPAGYIAIKGPGLAYPNVGASHNANYLGWHYNWPGAIGLYNDVTLKRYPTCSVTNVTPHVVFPSISL
SEINAGANREMPFEVAFKCQTGVINSTASSGTALGIRASAGAQAASAALGLRNANGGLSYLVSDRYGQPGMA
QGVGIRLLRDGSAMNLLVSEDSAMGSNAETRGWYPVIGNASNKTGEAGGISQYSETFRARLEKLTVGSMPSV
TPGRVEASAQVVIRVQ*
AnnotationID:1067GeneID:1058
AnnotatorUID: diggins
Modification Date/Time: 2006-01-30 22:10:52
Gene Name:cupD4
Confidence Code:3
GeneProduct:fimbrial subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC93347.1| (AJ414159) putative exported protein [Yersinia pestis CO92]
          Length = 455

 Score =  348 bits (892), Expect = 5e-95
 Identities = 197/445 (44%), Positives = 270/445 (60%), Gaps = 24/445 (5%)

>gb|AAO70109.1| (AE016842) putative fimbrial protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 441

 Score =  236 bits (603), Expect = 2e-61
 Identities = 156/461 (33%), Positives = 241/461 (52%), Gaps = 33/461 (7%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold






   
Genomic Context:






   
Comment:


















    ReferenceID:2119




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19261




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1058
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
65761
                           gb|AAP84168.1|
                           (AY273869) fimbrial subunit [Pseudomonas aeruginosa]
                           448
                           99.99
                           99.99
                           0
                           2325.0
     

     
     
1913
                           PA2131_tr
                           translation of PA2131
                           456
                           69.51
                           80.04
                           11
                           1645.0
     

     
     
65762
                           gb|AAG05519.1|AE004640_8
                           (AE004640) fimbrial subunit CupA4 [Pseudomonas aeruginosa PAO1]
                           456
                           69.51
                           80.04
                           11
                           1645.0
     

     
     
65763
                           emb|CAC93347.1|
                           (AJ414159) putative exported protein [Yersinia pestis CO92]
                           475
                           41.68
                           57.05
                           47
                           911.0
     

     
     
65764
                           gb|AAM83939.1|AE013635_4
                           (AE013635) conserved hypothetical protein [Yersinia pestis KIM]
                           452
                           40.70
                           54.42
                           66
                           844.0
     

     






      

          
GC ORFID: 44060How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL041Glimmer Score: 

          
Start: 4581183Stop: 4582529

          
Length: 1347


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_RL041 CupA4 448 Homolog: PA2131 / Biofilm-related / P.aeruginosa / PA01 (AAG05519) translation of RL041Homolog Bit Score 900.0

          
Other Homologs:  t_PA2131 (ORF: BLASTX 637.0), t_RL041 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACATCCCTGCGCGTCCTGCCTCTGCTCCTCGCGCTGCTCGCCTCGTCTAGCTGGGCGACCTGCTAC 
AAGGTCACGGCGGTAGGCAACGCCACGACTACCTCCAACACCCAGATACGTCCCGGTGAAGGCTCTGCCGGC 
ACCTGGGCCGGAGCCTGCGATACCTGCAACGGTTCCCTCGGTCTACCGAGCGTGATCAACGTCAGCGACGCC 
AGCTTCCAGCCCGACGGTAGCTTGATCGCCAGCTCGGTGGCGCCGCTCAGCCAATACGGCGACAGCGCCGGC 
TACGACCCAGAGCGCGTGTTCTTCCGCTGTGCTCCAGAGGACGATGTGTACGAGATGTTCTCCACCAATGCC 
GACGATCTCTACAGCGGCTGGTACCTAGGAGGCGACAGTGCGGGCAACTCGATTGGCCTGCAGTCCGCCTAT 
CGCACCGCCTGGCCCAACGTGCTGCTGCGCCTAACCCACGTGGAAACCGGGCAGTATTTCACCGATGTCTGG 
CGCGAGCGTCTGCTCGGCGGGCTCGATATCGACTCGCGAGGCTTTCAACTGGTCAAGGCGAAGAACCTCAGC 
GCGGTACGCGCCGAACTGTTCCGCGCTCCGCTGGAGTTCATCCGCTACTACTCGCCGACTACCGCCTCGCGG 
TTGTACGCCTACACCCAGCCCGCTGGCTACATCGCCATCAAGGGTCCCGGCCTGGCCTACCCCAACGTCGGC 
GCCAGCCATAACGCCAACTACCTCGGCTGGCACTACAACTGGCCGGGCGCCATCGGCCTGTACAACGACGTG 
ACGCTCAAGCGCTATCCCACCTGTTCCGTAACCAACGTCACGCCCCACGTTGTGTTCCCGTCGATTTCCCTC 
AGTGAGATTAATGCCGGCGCGAACCGTGAGATGCCCTTCGAGGTGGCCTTCAAGTGCCAAACGGGAGTGATC 
AACAGCACCGCCTCCAGCGGTACTGCACTGGGTATCAGGGCTTCAGCCGGGGCGCAGGCCGCGTCCGCTGCA 
CTGGGCCTGAGGAACGCCAATGGCGGGCTCTCCTACCTAGTTTCCGACCGCTACGGCCAGCCTGGTATGGCC 
CAAGGCGTGGGTATCCGCTTGCTGCGCGACGGCAGTGCGATGAACCTGCTGGTAAGCGAGGATTCCGCGATG 
GGCAGCAATGCCGAAACACGGGGCTGGTATCCAGTGATCGGCAACGCCTCGAACAAGACTGGCGAAGCGGGA 
GGCATCAGCCAGTACAGCGAGACCTTCCGTGCGCGCCTGGAAAAACTCACCGTTGGCAGCATGCCCAGCGTT 
ACCCCGGGACGGGTGGAGGCCAGCGCGCAGGTAGTGATTCGTGTCCAGTAA