ViewGene
Locus Name:
GeneID:
Location:

GeneID:1055
TrivialName: PA14_19270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19270
PAO1 Ortholog Locus:PA3467
Sequence Length:1368
Protein Length:455
Start: 1662081
Stop: 1660714
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06855.1|AE004767_6 (AE004767) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 453/455 (99%), Positives = 454/455 (99%)
Sequence:
ATGCCCGACGCGCCCGCATCCGCCGCCGAACGCCTCGAACGGCTGCCGCTGAGTCCGTATCACCGACTGATC
TTCGTGATCATCGCGCTGGCGTTCTTCTTCGACTCAATGGACCTGGCGATGATGACCTTCCTGCTCGGCTCG
ATCAAAGCCGAGTTCGGGCTCGACTCGGCGCAGGCCGGGCTGCTGGCCAGCTCGAGCTTCTTCGGCATGGTG
ATCGGCGCGGCCCTGTCGGGCATGCTCGCCGACCGCTTCGGGCGCAAGCCGGTATTCCAGGCCAGCATCGTG
CTCTGGGGCCTGGCCAGCTACCTGTGCTCCACCGCCGGCGACCTCGGCAGCCTGACCTTCTACCGGGTATTG
CTGGGGATCGGCATGGGGATGGAGTTTCCCATCGCCCAGTCGCTGCTGTCGGAGATGATCCCGGCCAGCCGC
CGCGGCAAGTACATTGCGCTGATGGACGGCTTCTGGCCGCTGGGCTTCGTCGCCGCCGGCTGCCTGTCCTAC
TTCCTCCTGCCGCTGACCGGCTGGCGCAGCATTTTCCTGGTGCTGGCGCTGCCGGCGGTGTTCGTCCTCGCC
ATCCGCTTCCTGATTCCCGAGTCGCCGCGCTGGCTGGAGCAGGCCGGCCGGCGCGAACAGGCGGACCGGGTA
TTGCGCGACATAGAAGCACGGGTGATGCGTTCGCTGGGCCTGACCGAGCTGCCGCCGCCGCTGCGCCAGCCG
CAGCGGGAACGCAGCCGTCCGGGCTTCTTCAGCGCCTTCGCCGAACTCTGGTCGCCAGCCTACCGGCGCCGC
ACCCTGACCGTCTGGGGCCTGTGGTTCTTCGCCCTGCTCGGTTTCTACGGCCTGACCTCCTGGCTCAGCGCG
CTGCTCCAGCAATCCGGCTTCGCCGTCACCCAGTCGGTGTACTACACGGTGCTGATCTCGCTGGCCGGGATA
CCCGGCTTCCTCTGCGCGGCCTGGCTGGTGGAAAGCTGGGGCCGCAAGCCGAGCTGCGTGCTGATGCTCCTC
GGCGGCGGCGCGATGGCCTACGCCTACGGCCAGACCGCGGTGTTCGGCGGCAGCCTGGCGCTGCTGATCGGC
TTCGGCCTGGCCATGCAGTTCTTCCTGTTCGGCATGTGGGCGGTGCTCTACACCTATACGCCGGAACTCTAT
CCGACCTCCGCGCGCGCCACCGGCTCGGGCTTCGCCTCGGCGGTCGGGCGAATCGGCTCGCTGCTCGGCCCG
CTGGTCACCGGGCTGGTCCTGCCGCTCACCGGCCAGGGCGGGGTGTTCACCCTCGGCGCCCTCTGTTTCGGC
GTCGCCGCCCTGGTGGTCTGGGCCTTCGGCATCGAGACCCGCGGGCGCACCCTGGAGGAGCTTGCCGGCTGA
Translation:
MPDAPASAAERLERLPLSPYHRLIFVIIALAFFFDSMDLAMMTFLLGSIKAEFGLDSAQAGLLASSSFFGMV
IGAALSGMLADRFGRKPVFQASIVLWGLASYLCSTAGDLGSLTFYRVLLGIGMGMEFPIAQSLLSEMIPASR
RGKYIALMDGFWPLGFVAAGCLSYFLLPLTGWRSIFLVLALPAVFVLAIRFLIPESPRWLEQAGRREQADRV
LRDIEARVMRSLGLTELPPPLRQPQRERSRPGFFSAFAELWSPAYRRRTLTVWGLWFFALLGFYGLTSWLSA
LLQQSGFAVTQSVYYTVLISLAGIPGFLCAAWLVESWGRKPSCVLMLLGGGAMAYAYGQTAVFGGSLALLIG
FGLAMQFFLFGMWAVLYTYTPELYPTSARATGSGFASAVGRIGSLLGPLVTGLVLPLTGQGGVFTLGALCFG
VAALVVWAFGIETRGRTLEELAG*
AnnotationID:1064GeneID:1055
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 09:09:01
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA3467
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00083,COG2814
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD17203.1| (AL646076) PROBABLE METABOLITE TRANSPORT TRANSMEMBRANE PROTEIN
           [Ralstonia solanacearum]
          Length = 476

 Score =  659 bits (1701), Expect = 0.0
 Identities = 326/453 (71%), Positives = 378/453 (83%), Gaps = 6/453 (1%)

>gb|AAN25179.1|AE014767_10 (AE014767) probable sugar transporter [Bifidobacterium longum
           NCC2705]
          Length = 449

 Score =  294 bits (753), Expect = 7e-79
 Identities = 163/461 (35%), Positives = 263/461 (57%), Gaps = 27/461 (5%)

>dbj|BAC19624.1| (AP005223) putative transport protein [Corynebacterium efficiens
           YS-314]
          Length = 480

 Score =  284 bits (726), Expect = 9e-76
 Identities = 151/446 (33%), Positives = 247/446 (55%), Gaps = 16/446 (3%)






 
Structural Features:
pfam00083, Sugar_tr, Sugar (and other) transporter.
CD-Length = 448 residues,  98.9% aligned
Score =  175 bits (445), Expect = 1e-44
Identities = 117/449 (26%), Positives = 189/449 (42%), Gaps = 23/449 (5%)

COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  94.9% aligned
Score = 89.5 bits (222), Expect = 8e-19
Identities = 96/421 (22%), Positives = 155/421 (36%), Gaps = 48/421 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2113




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19255




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32091




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1055_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1055
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1910
                           PA3467_tr
                           translation of PA3467
                           455
                           99.56
                           99.78
                           0
                           2327.0
     

     
     
65719
                           gb|AAG06855.1|AE004767_6
                           (AE004767) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           455
                           99.56
                           99.78
                           0
                           2327.0
     

     
     
65720
                           emb|CAD17203.1|
                           (AL646076) PROBABLE METABOLITE TRANSPORT TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           482
                           68.04
                           78.83
                           33
                           1706.0
     

     






      

          
GC ORFID: 44057How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3467Glimmer Score: 

          
Start: 3291851Stop: 3293218

          
Length: 1368


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3467 translation of PA3467Homolog Bit Score 900.0

          
Other Homologs:  t_PA3467 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGACGCGCCCGCATCCGCCGCCGAACGCCTCGAACGGCTGCCGCTGAGTCCGTATCACCGACTGATC 
TTCGTGATCATCGCGCTGGCGTTCTTCTTCGACTCAATGGACCTGGCGATGATGACCTTCCTGCTCGGCTCG 
ATCAAAGCCGAGTTCGGGCTCGACTCGGCGCAGGCCGGGCTGCTGGCCAGCTCGAGCTTCTTCGGCATGGTG 
ATCGGCGCGGCCCTGTCGGGCATGCTCGCCGACCGCTTCGGGCGCAAGCCGGTATTCCAGGCCAGCATCGTG 
CTCTGGGGCCTGGCCAGCTACCTGTGCTCCACCGCCGGCGACCTCGGCAGCCTGACCTTCTACCGGGTATTG 
CTGGGGATCGGCATGGGGATGGAGTTTCCCATCGCCCAGTCGCTGCTGTCGGAGATGATCCCGGCCAGCCGC 
CGCGGCAAGTACATTGCGCTGATGGACGGCTTCTGGCCGCTGGGCTTCGTCGCCGCCGGCTGCCTGTCCTAC 
TTCCTCCTGCCGCTGACCGGCTGGCGCAGCATTTTCCTGGTGCTGGCGCTGCCGGCGGTGTTCGTCCTCGCC 
ATCCGCTTCCTGATTCCCGAGTCGCCGCGCTGGCTGGAGCAGGCCGGCCGGCGCGAACAGGCGGACCGGGTA 
TTGCGCGACATAGAAGCACGGGTGATGCGTTCGCTGGGCCTGACCGAGCTGCCGCCGCCGCTGCGCCAGCCG 
CAGCGGGAACGCAGCCGTCCGGGCTTCTTCAGCGCCTTCGCCGAACTCTGGTCGCCAGCCTACCGGCGCCGC 
ACCCTGACCGTCTGGGGCCTGTGGTTCTTCGCCCTGCTCGGTTTCTACGGCCTGACCTCCTGGCTCAGCGCG 
CTGCTCCAGCAATCCGGCTTCGCCGTCACCCAGTCGGTGTACTACACGGTGCTGATCTCGCTGGCCGGGATA 
CCCGGCTTCCTCTGCGCGGCCTGGCTGGTGGAAAGCTGGGGCCGCAAGCCGAGCTGCGTGCTGATGCTCCTC 
GGCGGCGGCGCGATGGCCTACGCCTACGGCCAGACCGCGGTGTTCGGCGGCAGCCTGGCGCTGCTGATCGGC 
TTCGGCCTGGCCATGCAGTTCTTCCTGTTCGGCATGTGGGCGGTGCTCTACACCTATACGCCGGAACTCTAT 
CCGACCTCCGCGCGCGCCACCGGCTCGGGCTTCGCCTCGGCGGTCGGGCGAATCGGCTCGCTGCTCGGCCCG 
CTGGTCACCGGGCTGGTCCTGCCGCTCACCGGCCAGGGCGGGGTGTTCACCCTCGGCGCCCTCTGTTTCGGC 
GTCGCCGCCCTGGTGGTCTGGGCCTTCGGCATCGAGACCCGCGGGCGCACCCTGGAGGAGCTTGCCGGCTGA