ViewGene
Locus Name:
GeneID:
Location:

GeneID:1043
TrivialName: PA14_10330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10330
PAO1 Ortholog Locus:PA4144
Sequence Length:1416
Protein Length:471
Start: 891558
Stop: 890143
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07531.1|AE004831_3 (AE004831) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 470/471 (99%), Positives = 470/471 (99%)
Sequence:
ATGCGTGCCCTCGCCGGCCTGTTGTGCGGCCTGCTCGGCCTGGTTCCCGGCGCCGCCGCCTACGAGCCGGAC
GTGTTCGGCACCGCCGGCCAGGTCGCCGGCCAGGCGGTCTACGACCTCGGCGGCAGCGGTTTGCCCTGCCGC
GGCGGGCCGCCACCGACCGAGCTGAGCCTGGAGGAAGCCATCGAGCGGATCCTCTGCCACGACCCGCAGACC
CGCCTCGCCTGGGCCAATGCCAAGGCCCAGGCGGCCCAGGTCGGGATCGGCAAGTCCGCCTACCTGCCGCGC
CTGGACGGCCGTCTCGACGCCAGTCGCGGCTACAGCGACATGGATTATCGCGATGCCCCCTACCTCTCCGGC
GACGGCCATCGCCACCGGCGCGGCGCCAGCCTCCAATTGAGCTGGGTGCTGTTCGACTTCGGCCGCCGCAGC
GCCGCCCTGCGCAACGCCCAGCAGTTGCTGCTGGCAGCCAACGCCAGCCAGGACGCGACCCTGCAGAACACC
TTCGCCCTCGCCGCCCAGGCCTACTACGACGCCCTCGCCGCCCAGCGCAGCCTGGCCGCCTCGCGGCAGGTC
GCGGAGCTGGCGGCGCAGAACCTGGAAGCCGCCGACGCCAAGTACCGGGCCGGCGCCGCCGCCCTTTCCGAT
CGCCTGCAGGCGCAGACCGCGCTGTCCCAGGCGAGCCTCGCCCAGGTCCGCGACGAAGGCGCCCTGAGCAAC
GCCCTCGGCGTCATCGCCCTGCGCATGGGCCTGGCGCCGGATACCCCGCTGCGCCTCTCCGGCGAGCTGGAG
GCGCAACCCGACACCGGCTTCGTCAAGGCCATCGACGAGATGCTCGCCGAAGCCCGCCGCGAGCATCCGGCA
CTGCTCGCCGCCCAGGCGCGGCTGAAGGCCGCCGCCGCCTCGGTGGAGGAAAGCCGCGCCGCCGGCCGGCCG
AGCCTGGCGCTGAGCGCCAACCTGGCACGCAGCCATAGCGACCAGGCGATGGCCTTCAACGGCGATACCCGC
GAACGCGACCGCAGCATCGGCCTGCAACTGAACATCCCGTTGTTCGAAGGCTTCGAACGCACCTACCAGGTC
CGCAACGCCCTGGCCCGCCGCGAGGCCAGCGAAGCGGAGCTGGCCGACACCGAGCAGCAGGTTTCGCTGGAG
GTGTGGAACAACTACCAGTCGCTCAGCGTCGAGACCCGCAGCCTGGCGCGCACCCGCGAACTGGTCGAACAG
TCGCGGCAAAGCCTGGAGGTGGTGCAGGGCCGCTACCGCTCAGGGGTCGGCAGCATGATCGAGCTGCTCAAC
GCCCTGACCGCCTACGCCAGCGCCGAGGACCAGCACATCCGTGCCCTCGGCAACTGGCAGACCTCGCGCCTG
CGACTGGCGGCCAGCCTCGGTCGCCTGGGCTTCTGGAGCCTGCGCTGA
Translation:
MRALAGLLCGLLGLVPGAAAYEPDVFGTAGQVAGQAVYDLGGSGLPCRGGPPPTELSLEEAIERILCHDPQT
RLAWANAKAQAAQVGIGKSAYLPRLDGRLDASRGYSDMDYRDAPYLSGDGHRHRRGASLQLSWVLFDFGRRS
AALRNAQQLLLAANASQDATLQNTFALAAQAYYDALAAQRSLAASRQVAELAAQNLEAADAKYRAGAAALSD
RLQAQTALSQASLAQVRDEGALSNALGVIALRMGLAPDTPLRLSGELEAQPDTGFVKAIDEMLAEARREHPA
LLAAQARLKAAAASVEESRAAGRPSLALSANLARSHSDQAMAFNGDTRERDRSIGLQLNIPLFEGFERTYQV
RNALARREASEAELADTEQQVSLEVWNNYQSLSVETRSLARTRELVEQSRQSLEVVQGRYRSGVGSMIELLN
ALTAYASAEDQHIRALGNWQTSRLRLAASLGRLGFWSLR*
AnnotationID:1052GeneID:1043
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 15:03:29
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein precursor
Cell Localization:()
Synonyms:ompK
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1538,pfam02321
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1538, TolC, Outer membrane protein 
[Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
CD-Length = 457 residues,  94.3% aligned
Score =  164 bits (417), Expect = 1e-41
Identities = 118/434 (27%), Positives = 199/434 (45%), Gaps = 7/434 (1%)

pfam02321, OEP, Outer membrane efflux protein.
CD-Length = 188 residues, 100.0% aligned
Score = 72.0 bits (176), Expect = 1e-13
Identities = 60/188 (31%), Positives = 102/188 (54%), Gaps = 1/188 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2089




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19231




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36887




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1043_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1043
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1880
                           PA4144_tr
                           translation of PA4144
                           471
                           99.78
                           99.78
                           0
                           2333.0
     

     
     
65014
                           gb|AAG07531.1|AE004831_3
                           (AE004831) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           471
                           99.78
                           99.78
                           0
                           2333.0
     

     






      

          
GC ORFID: 44045How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4144Glimmer Score: 

          
Start: 4062379Stop: 4063794

          
Length: 1416


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4144 translation of PA4144Homolog Bit Score 903.0

          
Other Homologs:  t_PA4144 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGCCCTCGCCGGCCTGTTGTGCGGCCTGCTCGGCCTGGTTCCCGGCGCCGCCGCCTACGAGCCGGAC 
GTGTTCGGCACCGCCGGCCAGGTCGCCGGCCAGGCGGTCTACGACCTCGGCGGCAGCGGTTTGCCCTGCCGC 
GGCGGGCCGCCACCGACCGAGCTGAGCCTGGAGGAAGCCATCGAGCGGATCCTCTGCCACGACCCGCAGACC 
CGCCTCGCCTGGGCCAATGCCAAGGCCCAGGCGGCCCAGGTCGGGATCGGCAAGTCCGCCTACCTGCCGCGC 
CTGGACGGCCGTCTCGACGCCAGTCGCGGCTACAGCGACATGGATTATCGCGATGCCCCCTACCTCTCCGGC 
GACGGCCATCGCCACCGGCGCGGCGCCAGCCTCCAATTGAGCTGGGTGCTGTTCGACTTCGGCCGCCGCAGC 
GCCGCCCTGCGCAACGCCCAGCAGTTGCTGCTGGCAGCCAACGCCAGCCAGGACGCGACCCTGCAGAACACC 
TTCGCCCTCGCCGCCCAGGCCTACTACGACGCCCTCGCCGCCCAGCGCAGCCTGGCCGCCTCGCGGCAGGTC 
GCGGAGCTGGCGGCGCAGAACCTGGAAGCCGCCGACGCCAAGTACCGGGCCGGCGCCGCCGCCCTTTCCGAT 
CGCCTGCAGGCGCAGACCGCGCTGTCCCAGGCGAGCCTCGCCCAGGTCCGCGACGAAGGCGCCCTGAGCAAC 
GCCCTCGGCGTCATCGCCCTGCGCATGGGCCTGGCGCCGGATACCCCGCTGCGCCTCTCCGGCGAGCTGGAG 
GCGCAACCCGACACCGGCTTCGTCAAGGCCATCGACGAGATGCTCGCCGAAGCCCGCCGCGAGCATCCGGCA 
CTGCTCGCCGCCCAGGCGCGGCTGAAGGCCGCCGCCGCCTCGGTGGAGGAAAGCCGCGCCGCCGGCCGGCCG 
AGCCTGGCGCTGAGCGCCAACCTGGCACGCAGCCATAGCGACCAGGCGATGGCCTTCAACGGCGATACCCGC 
GAACGCGACCGCAGCATCGGCCTGCAACTGAACATCCCGTTGTTCGAAGGCTTCGAACGCACCTACCAGGTC 
CGCAACGCCCTGGCCCGCCGCGAGGCCAGCGAAGCGGAGCTGGCCGACACCGAGCAGCAGGTTTCGCTGGAG 
GTGTGGAACAACTACCAGTCGCTCAGCGTCGAGACCCGCAGCCTGGCGCGCACCCGCGAACTGGTCGAACAG 
TCGCGGCAAAGCCTGGAGGTGGTGCAGGGCCGCTACCGCTCAGGGGTCGGCAGCATGATCGAGCTGCTCAAC 
GCCCTGACCGCCTACGCCAGCGCCGAGGACCAGCACATCCGTGCCCTCGGCAACTGGCAGACCTCGCGCCTG 
CGACTGGCGGCCAGCCTCGGTCGCCTGGGCTTCTGGAGCCTGCGCTGA