ViewGene
Locus Name:
GeneID:
Location:

GeneID:996
TrivialName: PA14_01580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01580
PAO1 Ortholog Locus:PA0129
Sequence Length:1428
Protein Length:475
Start: 145308
Stop: 143881
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03519.1|AE004450_14 (AE004450) gamma-aminobutyrate permease [Pseudomonas aeruginosa PAO1]
Identities = 474/475 (99%), Positives = 474/475 (99%)
Sequence:
ATGTCCAAAGTCGTACTGGCTTCACAACTGCCGAACAAGCGCAACGCCTCGCTCGCGCCCGGCCTGAAACAA
CGCCACGTCACCATGCTGTCGATCGCCGGGGTGATCGGCGCCGGCCTGTTCGTCGGCTCCGGCCATGCCATC
GCCGCCGCCGGCCCGGCCGCCCTGCTCGCCTACCTGATCGCCGGCACCCTGGTGGTGCTGGTCATGCGCATG
CTCGGCGAAATGGCGGTCGCCTCCCCCGATACCGGTTCCTTCTCCACCTACGCCGATCGCTCCATCGGCCGC
TGGGCCGGTTTCACCATCGGCTGGCTCTACTGGTGGTTCTGGGTGCTGGTGATCCCCCTCGAAGCGATCGCC
GCCGCGGCCATCCTCAACGCCTGGTTCCCGGCCATCGACACCTGGATCTTCGCCCTCGCGGTGACCTTCCTG
CTCACCGTCACCAACCTCTTCAGCGTGGCCCGCTACGGCGAGTTCGAATTCTGGTTCGCGCTGCTCAAGGTG
ATCGCCATCATCGCCTTCATCGTGCTCGGCGCGGTGGCCATCGTCGGCGGCCTGCCGGAACGCGAGGTCAGC
GGCCTGTCCAGCCTGATGGCGAGCCACGGCGGCTTCGTGCCGAACGGCTACGGCGCGGTGCTCGGCGCCCTG
CTGACGACCATGTTCAGCTTCATGGGTACCGAGATCGTCACCATCGCCGCCGCCGAGTCCAAGGACCCGGCG
AAGCAGATCACCCGCGCCACCAACTCGGTGATCTGGCGGATCGGCCTGTTCTACCTGGTGTCGATCTTCATC
GTGATCTCCATCGTGCCGTGGAACGACCCGCTGCTGATCCAGGTCGGCTCCTACCAGCGCGCCCTGGAGCTG
CTGGACATCCCGCACGCCAAGCTGATCGTCGACCTGGTGGTACTGGTCGCCGTGGCCAGCTGCCTGAACTCG
GCGATCTACACCTCGTCGCGGATGGTCTTCTCCCTGGCCAAGCGCGGCGACGCCCCGAGCGTGCTCAAGCTG
ACCAACACCGCCCACGTACCACGCCCGGCGGTGCTGGCCAGCACCGCGGTGGGCTTCCTCACCACCATCGTC
AACTACTTCGCACCGGAGAAGGTCTTCACCTTCCTCCTCGCCAGCTCCGGCGCCGTGGCGCTACTGGTGTAC
CTGGTGATCGCCGTGGCCCAGTTGCGCATGCGCAAGCAATTGCAGGTCAGCGGCCAGCCCATCGAGTTCCGC
ATGTGGCTGTATCCCTGGCTGACCTGGGCGGTGATCCTGTTCATCGTCGCCGCGCTGAGCATCATGCTGATC
ATGCCGGAGCACCGTCACGAGGTGTTCGCCACCGCTCTGCTGACGATCTTCACCGTCTGCCTCGGGCTGCTC
AACGCGCGACGCAAGCCGCGCCTCGGCGAGGACTACGCCGGGAAGACGGCGCGGGTCTGA
Translation:
MSKVVLASQLPNKRNASLAPGLKQRHVTMLSIAGVIGAGLFVGSGHAIAAAGPAALLAYLIAGTLVVLVMRM
LGEMAVASPDTGSFSTYADRSIGRWAGFTIGWLYWWFWVLVIPLEAIAAAAILNAWFPAIDTWIFALAVTFL
LTVTNLFSVARYGEFEFWFALLKVIAIIAFIVLGAVAIVGGLPEREVSGLSSLMASHGGFVPNGYGAVLGAL
LTTMFSFMGTEIVTIAAAESKDPAKQITRATNSVIWRIGLFYLVSIFIVISIVPWNDPLLIQVGSYQRALEL
LDIPHAKLIVDLVVLVAVASCLNSAIYTSSRMVFSLAKRGDAPSVLKLTNTAHVPRPAVLASTAVGFLTTIV
NYFAPEKVFTFLLASSGAVALLVYLVIAVAQLRMRKQLQVSGQPIEFRMWLYPWLTWAVILFIVAALSIMLI
MPEHRHEVFATALLTIFTVCLGLLNARRKPRLGEDYAGKTARV*
AnnotationID:1005GeneID:996
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 05:05:29
Gene Name:gabP
Confidence Code:2
GeneProduct:gamma-aminobutyrate permease
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1113
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58781.1| (AE016875) gamma-aminobutyrate permease [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 463

 Score =  633 bits (1632), Expect = 0.0
 Identities = 320/447 (71%), Positives = 368/447 (82%), Gaps = 1/447 (0%)

>gb|AAN65915.1|AE016219_8 (AE016775) gamma-aminobutyrate transporter, putative [Pseudomonas
           putida KT2440]
          Length = 461

 Score =  629 bits (1622), Expect = e-179
 Identities = 319/448 (71%), Positives = 365/448 (81%), Gaps = 1/448 (0%)

>gb|AAC36833.1| (M88334) GABA permease [Escherichia coli]
          Length = 466

 Score =  580 bits (1495), Expect = e-165
 Identities = 296/444 (66%), Positives = 345/444 (77%), Gaps = 1/444 (0%)








 
Structural Features:
COG1113, AnsP, Gamma-aminobutyrate permease and related permeases 
[Amino acid transport and metabolism]
CD-Length = 462 residues, 100.0% aligned
Score =  448 bits (1154), Expect = 6e-127
Identities = 206/463 (44%), Positives = 278/463 (60%), Gaps = 1/463 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1995




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19137




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33498




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:996_cdd.html


    		




 
URL:

















    ReferenceID:35502




  
Author/Investigator(s):
        Niegemann E, Schulz A, Bartsch K.





  
Title:
        Molecular organization of the Escherichia coli gab cluster: nucleotide sequence of the structural genes gabD and gabP and expression of the GABA permease gene.




  
PubMed:
        8297211


MedLine:
        




    
Source:
Arch Microbiol. 1993;160(6):454-60.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8297211

















    ReferenceID:35503




  
Author/Investigator(s):
        Borriss R, Porwollik S, Schroeter R.





  
Title:
        The 52 degrees-55 degrees segment of the Bacillus subtilis chromosome: a region devoted to purine uptake and metabolism, and containing the genes cotA, gabP and guaA and the pur gene cluster within a 34960 bp nucleotide sequence.




  
PubMed:
        8969499


MedLine:
        




    
Source:
Microbiology. 1996 Nov;142 ( Pt 11):3027-31.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8969499









           
Homologs By Global Alignment 

           

       



     
Gene ID:996
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1794
                           PA0129_tr
                           translation of PA0129
                           475
                           99.78
                           99.78
                           0
                           2376.0
     

     
     
62694
                           gb|AAG03519.1|AE004450_14
                           (AE004450) gamma-aminobutyrate permease [Pseudomonas aeruginosa PAO1]
                           475
                           99.78
                           99.78
                           0
                           2376.0
     

     
     
62696
                           gb|AAN65915.1|AE016219_8
                           (AE016775) gamma-aminobutyrate transporter, putative [Pseudomonas putida KT2440]
                           476
                           67.43
                           77.94
                           16
                           1620.0
     

     
     
62695
                           gb|AAO58781.1|
                           (AE016875) gamma-aminobutyrate permease [Pseudomonas syringae pv. tomato str. DC3000]
                           483
                           67.08
                           77.22
                           28
                           1628.0
     

     
     
62699
                           gb|AAC36833.1|
                           (M88334) GABA permease [Escherichia coli]
                           476
                           63.02
                           74.36
                           11
                           1482.0
     

     






      

          
GC ORFID: 43998How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0129Glimmer Score: 

          
Start: 5946647Stop: 5945220

          
Length: 1428


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0129 translation of PA0129Homolog Bit Score 919.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6478 (ORF: BLASTX 636.0), t_PA0129 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAAAGTCGTACTGGCTTCACAACTGCCGAACAAGCGCAACGCCTCGCTCGCGCCCGGCCTGAAACAA 
CGCCACGTCACCATGCTGTCGATCGCCGGGGTGATCGGCGCCGGCCTGTTCGTCGGCTCCGGCCATGCCATC 
GCCGCCGCCGGCCCGGCCGCCCTGCTCGCCTACCTGATCGCCGGCACCCTGGTGGTGCTGGTCATGCGCATG 
CTCGGCGAAATGGCGGTCGCCTCCCCCGATACCGGTTCCTTCTCCACCTACGCCGATCGCTCCATCGGCCGC 
TGGGCCGGTTTCACCATCGGCTGGCTCTACTGGTGGTTCTGGGTGCTGGTGATCCCCCTCGAAGCGATCGCC 
GCCGCGGCCATCCTCAACGCCTGGTTCCCGGCCATCGACACCTGGATCTTCGCCCTCGCGGTGACCTTCCTG 
CTCACCGTCACCAACCTCTTCAGCGTGGCCCGCTACGGCGAGTTCGAATTCTGGTTCGCGCTGCTCAAGGTG 
ATCGCCATCATCGCCTTCATCGTGCTCGGCGCGGTGGCCATCGTCGGCGGCCTGCCGGAACGCGAGGTCAGC 
GGCCTGTCCAGCCTGATGGCGAGCCACGGCGGCTTCGTGCCGAACGGCTACGGCGCGGTGCTCGGCGCCCTG 
CTGACGACCATGTTCAGCTTCATGGGTACCGAGATCGTCACCATCGCCGCCGCCGAGTCCAAGGACCCGGCG 
AAGCAGATCACCCGCGCCACCAACTCGGTGATCTGGCGGATCGGCCTGTTCTACCTGGTGTCGATCTTCATC 
GTGATCTCCATCGTGCCGTGGAACGACCCGCTGCTGATCCAGGTCGGCTCCTACCAGCGCGCCCTGGAGCTG 
CTGGACATCCCGCACGCCAAGCTGATCGTCGACCTGGTGGTACTGGTCGCCGTGGCCAGCTGCCTGAACTCG 
GCGATCTACACCTCGTCGCGGATGGTCTTCTCCCTGGCCAAGCGCGGCGACGCCCCGAGCGTGCTCAAGCTG 
ACCAACACCGCCCACGTACCACGCCCGGCGGTGCTGGCCAGCACCGCGGTGGGCTTCCTCACCACCATCGTC 
AACTACTTCGCACCGGAGAAGGTCTTCACCTTCCTCCTCGCCAGCTCCGGCGCCGTGGCGCTACTGGTGTAC 
CTGGTGATCGCCGTGGCCCAGTTGCGCATGCGCAAGCAATTGCAGGTCAGCGGCCAGCCCATCGAGTTCCGC 
ATGTGGCTGTATCCCTGGCTGACCTGGGCGGTGATCCTGTTCATCGTCGCCGCGCTGAGCATCATGCTGATC 
ATGCCGGAGCACCGTCACGAGGTGTTCGCCACCGCTCTGCTGACGATCTTCACCGTCTGCCTCGGGCTGCTC 
AACGCGCGACGCAAGCCGCGCCTCGGCGAGGACTACGCCGGGAAGACGGCGCGGGTCTGA