ViewGene

Locus Name:
GeneID:
Location:

GeneID:993
TrivialName: PA14_50180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50180
PAO1 Ortholog Locus:PA1099
Sequence Length:1422
Protein Length:473
Start: 4459546
Stop: 4458125
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04488.1|AE004540_8 (AE004540) two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 473/473 (100%), Positives = 473/473 (100%)
Sequence:
ATGGCAGCCAAAGTCCTGCTGGTCGAAGACGACCGCGCACTACGCGAAGCCCTCAGCGACACCCTGCTGCTG
GGCGGTCACGAGTTCGTCGCCGTGGACTCGGCGGAGGCGGCGCTGCCGGTCCTGGCCCGCGAAGCCTTCAGC
CTGGTGATCAGCGACGTGAACATGCCGGGCATGGACGGACACCAGTTGCTCGGCCTGATCCGTACGCGCTAC
CCGCACCTGCCGGTGTTGCTGATGACCGCCTACGGCGCGGTCGATCGCGCCGTCGAGGCGATGCGCCAGGGC
GCCGCCGACTACCTGGTCAAGCCGTTCGAGGCGCGGGCGCTGCTCGACCTGGTGGCACGCCATGCGCTGGGC
CAGTTGCCGGGCAGCGAGGAGGATGGTCCGGTGGCCCTGGAGCCGGCCAGCCGGCAGTTGCTGGAACTGGCC
GCGCGGGTCGCGCGCAGCGATTCCACCGTGCTGATCTCCGGCGAGTCCGGGACCGGCAAGGAAGTCCTGGCC
AACTATATCCACCAGCAATCGCCGCGTGCCGGCAAGCCGTTCATCGCGATCAACTGTGCGGCGATCCCGGAC
AACATGCTCGAGGCCACCCTGTTCGGCCACGAGAAAGGTTCCTTCACCGGCGCCATTGCCGCCCAGCCCGGC
AAGTTCGAGCTGGCCGACGGCGGCACCATTCTTCTCGACGAGATATCGGAAATGCCCCTCGGCCTGCAGGCC
AAGTTGCTGCGCGTATTGCAGGAGCGCGAGGTGGAGCGGGTCGGTGCGCGCAAGCCGATCAACCTGGATATC
CGCGTGCTTGCCACGACCAACCGCGACCTCGCGGCGGAAGTCGCGGCGGGGCGTTTCCGCGAGGACCTCTAC
TATCGCCTGTCGGTCTTCCCGCTGGCCTGGCGGCCGCTGCGCGAACGCCCTGCGGACATCCTGCCGCTGGCC
GAGCGTCTGCTGCGCAAGCACAGCCGCAAGATGAACCTCGGCGCGGTGGCGCTCGGCCCCGAGGCCGCCCAG
TGCCTGGTCCGGCATGCCTGGCCGGGCAACGTACGGGAACTCGACAACGCCATCCAGCGTGCGTTGATCCTG
CAACAGGGCGGCCTGATCCAGCCCGCCGACCTGTGCCTCACCGCGCCGATCGGCATGCCGCTCGCGGCCCCG
GTGCCGGTGCCCATGCCGGCAATGCCACCGGCCACCCCGCCGAGCGTCGAGATTCCGTCGCCGGCCGCAGGC
CAGGACGCTAGCGGCGCGCTGGGCGACGACCTGCGCCGCCGCGAATTCCAGGTGATCATCGATACCCTGCGC
ACCGAGCGCGGCCGCCGCAAGGAGGCTGCCGAGCGCCTTGGTATCAGCCCACGGACCCTGCGCTACAAGCTC
GCCCAGATGCGCGACGCGGGGATGGACGTGGAGGCCTATCTCTACGCCATCTGA
Translation:
MAAKVLLVEDDRALREALSDTLLLGGHEFVAVDSAEAALPVLAREAFSLVISDVNMPGMDGHQLLGLIRTRY
PHLPVLLMTAYGAVDRAVEAMRQGAADYLVKPFEARALLDLVARHALGQLPGSEEDGPVALEPASRQLLELA
ARVARSDSTVLISGESGTGKEVLANYIHQQSPRAGKPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQPG
KFELADGGTILLDEISEMPLGLQAKLLRVLQEREVERVGARKPINLDIRVLATTNRDLAAEVAAGRFREDLY
YRLSVFPLAWRPLRERPADILPLAERLLRKHSRKMNLGAVALGPEAAQCLVRHAWPGNVRELDNAIQRALIL
QQGGLIQPADLCLTAPIGMPLAAPVPVPMPAMPPATPPSVEIPSPAAGQDASGALGDDLRRREFQVIIDTLR
TERGRRKEAAERLGISPRTLRYKLAQMRDAGMDVEAYLYAI*
AnnotationID:1002GeneID:993
AnnotatorUID: danlee
Modification Date/Time: 2004-05-31 14:02:34
Gene Name:fleR
Confidence Code:1
GeneProduct:two-component response regulator
Cell Localization:(1) Cytoplasmic
Synonyms:PA1099
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2204
Secondary Functional Category(ies):Transcriptional regulators, Motility & Attachment
EC Number:
Status:ACTIVE
Pathway:
Two-component System 
Homology:
Structural Features:
COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, 
and DNA-binding domains [Signal transduction mechanisms]
             CD-Length = 464 residues,  99.4% aligned
             Score =  474 bits (1220), Expect = 2e-134
Genomic Context:
fleQSR (Pseudomonas aeruginosa)
Comment:
ReferenceID:1989
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19131
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32399
Author/Investigator(s): Ritchings BW, Almira EC, Lory S, Ramphal R.
Title: Cloning and phenotypic characterization of fleS and fleR, new response regulators of Pseudomonas aeruginosa which regulate motility and adhesion to mucin.
PubMed: 96071911
MedLine:
Source:
Infect Immun. 1995 Dec;63(12):4868-76.
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:993

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1773 PA1099_tr translation of PA1099 473 99.99 99.99 0 2374.0
62258 gb|AAG04488.1|AE004540_8 (AE004540) two-component response regulator [Pseudomonas aeruginosa PAO1] 473 99.99 99.99 0 2374.0
62259 gb|AAA93530.1| (L41213) transcriptional activator [Pseudomonas aeruginosa] 473 99.57 99.57 0 2363.0
62260 gb|AAG47966.1|AF312695_6 (AF312695) FleR [Pseudomonas fluorescens] 473 79.06 85.41 10 1854.0
62261 gb|AAO55474.1| (AE016862) sigma-54 dependent transcriptional regulator/response regulator FleR [Pseudomonas syringae pv. tomato str. DC3000] 474 76.16 83.96 4 1781.0
GC ORFID: 43995How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1099Glimmer Score:
Start: 494362Stop: 495783
Length: 1422
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1099 translation of PA1099Homolog Bit Score 919.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7916 (ORF: BLASTX 679.0), t_PA4726 (ORF: BLASTX 286.0), t_PA2359 (ORF: BLASTX 265.0), psyr_15may02_Scaffold1_revised_gene1290 (ORF: BLASTX 263.0), t_PA2354 (ORF: BLASTX 261.0), psyr_15may02_Scaffold8_revised_gene7914 (ORF: BLASTX 256.0), t_PA1099 (ORF: GLIMMER)
GC ORF Sequence
ATGGCAGCCAAAGTCCTGCTGGTCGAAGACGACCGCGCACTACGCGAAGCCCTCAGCGACACCCTGCTGCTG
GGCGGTCACGAGTTCGTCGCCGTGGACTCGGCGGAGGCGGCGCTGCCGGTCCTGGCCCGCGAAGCCTTCAGC
CTGGTGATCAGCGACGTGAACATGCCGGGCATGGACGGACACCAGTTGCTCGGCCTGATCCGTACGCGCTAC
CCGCACCTGCCGGTGTTGCTGATGACCGCCTACGGCGCGGTCGATCGCGCCGTCGAGGCGATGCGCCAGGGC
GCCGCCGACTACCTGGTCAAGCCGTTCGAGGCGCGGGCGCTGCTCGACCTGGTGGCACGCCATGCGCTGGGC
CAGTTGCCGGGCAGCGAGGAGGATGGTCCGGTGGCCCTGGAGCCGGCCAGCCGGCAGTTGCTGGAACTGGCC
GCGCGGGTCGCGCGCAGCGATTCCACCGTGCTGATCTCCGGCGAGTCCGGGACCGGCAAGGAAGTCCTGGCC
AACTATATCCACCAGCAATCGCCGCGTGCCGGCAAGCCGTTCATCGCGATCAACTGTGCGGCGATCCCGGAC
AACATGCTCGAGGCCACCCTGTTCGGCCACGAGAAAGGTTCCTTCACCGGCGCCATTGCCGCCCAGCCCGGC
AAGTTCGAGCTGGCCGACGGCGGCACCATTCTTCTCGACGAGATATCGGAAATGCCCCTCGGCCTGCAGGCC
AAGTTGCTGCGCGTATTGCAGGAGCGCGAGGTGGAGCGGGTCGGTGCGCGCAAGCCGATCAACCTGGATATC
CGCGTGCTTGCCACGACCAACCGCGACCTCGCGGCGGAAGTCGCGGCGGGGCGTTTCCGCGAGGACCTCTAC
TATCGCCTGTCGGTCTTCCCGCTGGCCTGGCGGCCGCTGCGCGAACGCCCTGCGGACATCCTGCCGCTGGCC
GAGCGTCTGCTGCGCAAGCACAGCCGCAAGATGAACCTCGGCGCGGTGGCGCTCGGCCCCGAGGCCGCCCAG
TGCCTGGTCCGGCATGCCTGGCCGGGCAACGTACGGGAACTCGACAACGCCATCCAGCGTGCGTTGATCCTG
CAACAGGGCGGCCTGATCCAGCCCGCCGACCTGTGCCTCACCGCGCCGATCGGCATGCCGCTCGCGGCCCCG
GTGCCGGTGCCCATGCCGGCAATGCCACCGGCCACCCCGCCGAGCGTCGAGATTCCGTCGCCGGCCGCAGGC
CAGGACGCTAGCGGCGCGCTGGGCGACGACCTGCGCCGCCGCGAATTCCAGGTGATCATCGATACCCTGCGC
ACCGAGCGCGGCCGCCGCAAGGAGGCTGCCGAGCGCCTTGGTATCAGCCCACGGACCCTGCGCTACAAGCTC
GCCCAGATGCGCGACGCGGGGATGGACGTGGAGGCCTATCTCTACGCCATCTGA