ViewGene
Locus Name:
GeneID:
Location:

GeneID:992
TrivialName: PA14_02690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02690
PAO1 Ortholog Locus:PA0220
Sequence Length:1434
Protein Length:477
Start: 238918
Stop: 240351
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03609.1|AE004460_2 (AE004460) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 477/477 (100%), Positives = 477/477 (100%)
Sequence:
ATGAACGACACGCCGAACGTGCGTGAGCCGGCCCTGCGCCGCGTGCTCGGGCTGGGACCGCTGCTGGCGGTG
GCCATCGGCCTGGTGGTTTCCCAGGGCGTGATGGTACTGATGCTGCAAGGTGCCGGGACGGCCGGCCTGGGC
TTCATCGTGCCGCTGGGAGTGGCCTACCTGCTGGCGCTGAGCTACGCCTTTTCCTTTTCCGAACTGGCCCTG
ATGATTCCCCGCGCCGGTAGCCTTAGCAGCTACACCGAGGTGGCCATCGGGCATTTCCCGGCGATCCTGGCG
ACCTTTTCCGGCTACGTGGTGGTGGCGATGTTCGCCCTCTCGGCGGAACTGCTGCTGCTCGACCTGATCATC
GGCAAGGTCTACCCCGGCGCGCTGCCGCCGATGCTGGTGGCCTACGGCGTGCTCGGCCTGTTCACCCTGCTC
AACCTGCTCGGCATCGACATCTTCGCGCGCCTGCAGAGCGCCCTGGCGCTGCTGATGATGATCGTCCTGCTG
GTGCTCGGCCTGGGTGCGGTGAGCAGTGACCACGCTTCCGCGCAGACTGCCCTGGCGAGCGGCTGGAACCCG
CTCGGGGTAAGCGCCCTGGCGCTCACCGCGATGGCCGTGTGGGGCTTCGTCGGCGCCGAGTTCGTCTGCCCG
CTGGTGGAGGAGACGCGGCGTCCGGAGCGCAATATCCCGCGTTCGATGATCCTCGGCCTGAGCATCATCTTC
CTGACCATCGCCCTCTACTGCTTCGGTGCGCTGCTGTGCATCCCGCAGGCGGAACTGGCCGGCGACCCGCTG
CCGCACTTCCTCTTCGCCAACCGCGTGTTCGGCGAGTACGGCCAGCTGTTCCTGGTGATCGCCGCGATCACC
GCCACCTGCAGCACCCTCAACTCGTCGCTGGCGGCGATCCCGCGGATGCTCTACGGGATGGCGCAGAACGGT
CAGGCCTTCCCGCAATTCAAGCAGCTCAGCCGGCGGGCGCGCACGCCCTGGGTGGCGGTGCTGTTCGTCGCC
GCGATCACCGGCCTGCCGATCCTGATCCTCGGCCAGGACCCGGACTCGATCAACCTGCTGCTGCTCGCCGCC
GCGCTGGCCTGGCTGCTGGCCTACATCATCGCCCACGTCGACGTGCTGGCCCTGCGCCGTCGCTATCCGCAC
ATCGCCCGTCCGTTCCGCACGCCGTTCTACCCGCTGCCGCAACTGTTCGGCATCGCCGGGATGATCTACGCG
GTGGTCCACGTCTCGCCGACCCCGGAAATGACCGGACGGATCTTCGCCAGCGCCGGCGTGGTGCTGGGCGTG
GTCTCGCTGGTGGCGGTGGTGTGGATCAAGGGCGTGATGCGCAAGCCCCTCTTCGTACCCGAACCGCTCGAG
ACGGCCGGTGAGACTGCCCAGGGCAAGTCCGTCGCCCTCGATCCCCTGCAATCCCCTTCGGCCTGA
Translation:
MNDTPNVREPALRRVLGLGPLLAVAIGLVVSQGVMVLMLQGAGTAGLGFIVPLGVAYLLALSYAFSFSELAL
MIPRAGSLSSYTEVAIGHFPAILATFSGYVVVAMFALSAELLLLDLIIGKVYPGALPPMLVAYGVLGLFTLL
NLLGIDIFARLQSALALLMMIVLLVLGLGAVSSDHASAQTALASGWNPLGVSALALTAMAVWGFVGAEFVCP
LVEETRRPERNIPRSMILGLSIIFLTIALYCFGALLCIPQAELAGDPLPHFLFANRVFGEYGQLFLVIAAIT
ATCSTLNSSLAAIPRMLYGMAQNGQAFPQFKQLSRRARTPWVAVLFVAAITGLPILILGQDPDSINLLLLAA
ALAWLLAYIIAHVDVLALRRRYPHIARPFRTPFYPLPQLFGIAGMIYAVVHVSPTPEMTGRIFASAGVVLGV
VSLVAVVWIKGVMRKPLFVPEPLETAGETAQGKSVALDPLQSPSA*
AnnotationID:1001GeneID:992
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 13:01:45
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid permease
Cell Localization:()
Synonyms:PA0220
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0531,COG1113,pfam00324
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]
CD-Length = 466 residues,  87.6% aligned
Score =  128 bits (322), Expect = 2e-30
Identities = 112/409 (27%), Positives = 202/409 (49%), Gaps = 11/409 (2%)

COG1113, AnsP, Gamma-aminobutyrate permease and related permeases 
[Amino acid transport and metabolism]
CD-Length = 462 residues,  98.9% aligned
Score =  100 bits (251), Expect = 4e-22
Identities = 102/463 (22%), Positives = 192/463 (41%), Gaps = 22/463 (4%)

pfam00324, AA_permease, Amino acid permease.
CD-Length = 473 residues,  97.3% aligned
Score = 89.2 bits (221), Expect = 9e-19
Identities = 87/461 (18%), Positives = 183/461 (39%), Gaps = 37/461 (8%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1987




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19129




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33568




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:992_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:992
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1772
                           PA0220_tr
                           translation of PA0220
                           477
                           99.99
                           99.99
                           0
                           2377.0
     

     
     
62257
                           gb|AAG03609.1|AE004460_2
                           (AE004460) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           477
                           99.99
                           99.99
                           0
                           2377.0
     

     






      

          
GC ORFID: 43994How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0220Glimmer Score: 

          
Start: 6040259Stop: 6041692

          
Length: 1434


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0220 translation of PA0220Homolog Bit Score 920.0

          
Other Homologs:  t_PA0220 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACACGCCGAACGTGCGTGAGCCGGCCCTGCGCCGCGTGCTCGGGCTGGGACCGCTGCTGGCGGTG 
GCCATCGGCCTGGTGGTTTCCCAGGGCGTGATGGTACTGATGCTGCAAGGTGCCGGGACGGCCGGCCTGGGC 
TTCATCGTGCCGCTGGGAGTGGCCTACCTGCTGGCGCTGAGCTACGCCTTTTCCTTTTCCGAACTGGCCCTG 
ATGATTCCCCGCGCCGGTAGCCTTAGCAGCTACACCGAGGTGGCCATCGGGCATTTCCCGGCGATCCTGGCG 
ACCTTTTCCGGCTACGTGGTGGTGGCGATGTTCGCCCTCTCGGCGGAACTGCTGCTGCTCGACCTGATCATC 
GGCAAGGTCTACCCCGGCGCGCTGCCGCCGATGCTGGTGGCCTACGGCGTGCTCGGCCTGTTCACCCTGCTC 
AACCTGCTCGGCATCGACATCTTCGCGCGCCTGCAGAGCGCCCTGGCGCTGCTGATGATGATCGTCCTGCTG 
GTGCTCGGCCTGGGTGCGGTGAGCAGTGACCACGCTTCCGCGCAGACTGCCCTGGCGAGCGGCTGGAACCCG 
CTCGGGGTAAGCGCCCTGGCGCTCACCGCGATGGCCGTGTGGGGCTTCGTCGGCGCCGAGTTCGTCTGCCCG 
CTGGTGGAGGAGACGCGGCGTCCGGAGCGCAATATCCCGCGTTCGATGATCCTCGGCCTGAGCATCATCTTC 
CTGACCATCGCCCTCTACTGCTTCGGTGCGCTGCTGTGCATCCCGCAGGCGGAACTGGCCGGCGACCCGCTG 
CCGCACTTCCTCTTCGCCAACCGCGTGTTCGGCGAGTACGGCCAGCTGTTCCTGGTGATCGCCGCGATCACC 
GCCACCTGCAGCACCCTCAACTCGTCGCTGGCGGCGATCCCGCGGATGCTCTACGGGATGGCGCAGAACGGT 
CAGGCCTTCCCGCAATTCAAGCAGCTCAGCCGGCGGGCGCGCACGCCCTGGGTGGCGGTGCTGTTCGTCGCC 
GCGATCACCGGCCTGCCGATCCTGATCCTCGGCCAGGACCCGGACTCGATCAACCTGCTGCTGCTCGCCGCC 
GCGCTGGCCTGGCTGCTGGCCTACATCATCGCCCACGTCGACGTGCTGGCCCTGCGCCGTCGCTATCCGCAC 
ATCGCCCGTCCGTTCCGCACGCCGTTCTACCCGCTGCCGCAACTGTTCGGCATCGCCGGGATGATCTACGCG 
GTGGTCCACGTCTCGCCGACCCCGGAAATGACCGGACGGATCTTCGCCAGCGCCGGCGTGGTGCTGGGCGTG 
GTCTCGCTGGTGGCGGTGGTGTGGATCAAGGGCGTGATGCGCAAGCCCCTCTTCGTACCCGAACCGCTCGAG 
ACGGCCGGTGAGACTGCCCAGGGCAAGTCCGTCGCCCTCGATCCCCTGCAATCCCCTTCGGCCTGA