ViewGene

Locus Name:
GeneID:
Location:

GeneID:991
TrivialName: PA14_69500
AnnotatorUID: danlee
Modification Date/Time:2006-06-03 01:01:08
LocusName:PA14_69500
PAO1 Ortholog Locus:PA5263
Sequence Length:1395
Protein Length:464
Start: 6196810
Stop: 6198204
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08648.1|AE004938_10 (AE004938) argininosuccinate lyase [Pseudomonas aeruginosa PAO1]
Identities = 463/464 (99%), Positives = 464/464 (100%)
Sequence:
ATGAGCGTAGAGAAGACCAACCAGTCCTGGGGCGGCCGCTTCAGCGAGCCCGTCGACGCCTTCGTCGCCCGT
TTCACCGCCTCCGTCGACTTCGACAAGCGTCTCTACCGCCACGACATCATGGGTTCCATCGCCCACGCCACG
ATGCTGGCCAAGGTCGGCGTGCTGAGCGACGCCGAGCGCGATGCGATCGTAGACGGCCTGCAACAGATCCAG
GCGGAAATCGAAGCCGGCAGCTTCGACTGGCGCGTCGACCTGGAAGACGTGCACATGAACATCGAGGCGCGC
CTGACCGACCGCATCGGCGTCACCGGCAAGAAGCTCCACACCGGTCGCTCGCGCAACGACCAGGTGGCCACC
GACATCCGCCTCTGGCTACGCGACGAGATCGACACCATCCTCGCCGAGATCACCCGCCTGCAGGAGGGCCTG
CTGGGCCTGGCCGAAGCGGAAGCCGACACCATCATGCCCGGTTTCACCCACCTGCAGACCGCCCAGCCGGTG
ACCTTCGGCCACCACCTGCTGGCCTGGTTCGAGATGCTCGGCCGCGACTACGAGCGCCTGGTCGACTGCCGC
AAGCGGGTCAACCGCATGCCGCTCGGCTCGGCGGCCCTGGCCGGCACCACCTACCCGATCCAGCGCGAGATC
ACCTGCCAGTTGCTGGGCTTCGACGCGGTTGGCGGCAACTCCCTGGACGGCGTCTCCGACCGCGACTTCGCC
ATCGAATTCTGCGCCGCCGCCAGCCTGGCGATGATGCACCTGTCGCGCTTCTCGGAAGAGCTGGTGCTGTGG
ACCAGCGCGCAGTTCCAGTTCATCGACCTGCCCGACCGCTTCTGCACCGGCTCCTCGATCATGCCGCAGAAG
AAGAACCCCGACGTGCCGGAGCTGGTACGCGGCAAGTCCGGCCGGGTGTTCGGCGCCCTCACCGGCTTGCTG
ACCCTGATGAAGGGCCAGCCGCTGGCCTACAACAAGGACAACCAGGAAGACAAGGAACCGCTGTTCGACGCC
GCCGACACCCTGCGCGACAGCCTGCGCGCCTTCGCCGACATGGTCCCGGCGATCCGGCCCCGGCGCGAGATC
ATGCGCGAGGCGGCACGCCGCGGTTTCTCCACCGCCACCGACCTGGCCGACTACCTGGTGCGCAAGGGCCTG
CCGTTCCGCGACTGCCACGAGATCGTCGGCCACGCAGTGAAGTACGGCGTGGACAGCGGCAAGGACCTCGCC
GAGATGAGCCTCGACGAACTGCGCCGCTTCAGCGAGCAGATCGACGCCGACGTCTTCGACGTGCTGACCCTG
GAAGGCTCGGTCAACGCCCGCGACCATATCGGCGGCACCGCGCCGAACCAGGTCCGTGCCGCCGTCGCCCGC
GGCCGGCAGTTGCTCGCCCAGCGCTGA
Translation:
MSVEKTNQSWGGRFSEPVDAFVARFTASVDFDKRLYRHDIMGSIAHATMLAKVGVLSDAERDAIVDGLQQIQ
AEIEAGSFDWRVDLEDVHMNIEARLTDRIGVTGKKLHTGRSRNDQVATDIRLWLRDEIDTILAEITRLQEGL
LGLAEAEADTIMPGFTHLQTAQPVTFGHHLLAWFEMLGRDYERLVDCRKRVNRMPLGSAALAGTTYPIQREI
TCQLLGFDAVGGNSLDGVSDRDFAIEFCAAASLAMMHLSRFSEELVLWTSAQFQFIDLPDRFCTGSSIMPQK
KNPDVPELVRGKSGRVFGALTGLLTLMKGQPLAYNKDNQEDKEPLFDAADTLRDSLRAFADMVPAIRPRREI
MREAARRGFSTATDLADYLVRKGLPFRDCHEIVGHAVKYGVDSGKDLAEMSLDELRRFSEQIDADVFDVLTL
EGSVNARDHIGGTAPNQVRAAVARGRQLLAQR*
AnnotationID:1000GeneID:991
AnnotatorUID: danlee
Modification Date/Time: 2005-07-28 15:03:13
Gene Name:argH
Confidence Code:2
GeneProduct:argininosuccinate lyase
Cell Localization:(1) Cytoplasmic
Synonyms:PA5263
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Alanine and Aspartate metabolism; Arginine and proline metabolism; 
Urea cycle and metabolism of amino groups
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:1985
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19127
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:991

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1771 PA5263_tr translation of PA5263 464 99.78 99.99 0 2377.0
62143 gb|AAG08648.1|AE004938_10 (AE004938) argininosuccinate lyase [Pseudomonas aeruginosa PAO1] 464 99.78 99.99 0 2377.0
62144 gb|AAN65817.1|AE016210_5 (AE016774) argininosuccinate lyase [Pseudomonas putida KT2440] 468 90.17 94.44 4 2199.0
62145 gb|AAO53679.1| (AE016856) argininosuccinate lyase [Pseudomonas syringae pv. tomato str. DC3000] 464 89.65 95.47 0 2176.0
62146 gb|AAQ57794.1| (AE016910) argininosuccinate lyase [Chromobacterium violaceum ATCC 12472] 464 66.59 76.29 5 1557.0
GC ORFID: 43993How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5263Glimmer Score:
Start: 5460497Stop: 5461891
Length: 1395
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5263 translation of PA5263Homolog Bit Score 920.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3005 (ORF: BLASTX 842.0), t_PA5263 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGTAGAGAAGACCAACCAGTCCTGGGGCGGCCGCTTCAGCGAGCCCGTCGACGCCTTCGTCGCCCGT
TTCACCGCCTCCGTCGACTTCGACAAGCGTCTCTACCGCCACGACATCATGGGTTCCATCGCCCACGCCACG
ATGCTGGCCAAGGTCGGCGTGCTGAGCGACGCCGAGCGCGATGCGATCGTAGACGGCCTGCAACAGATCCAG
GCGGAAATCGAAGCCGGCAGCTTCGACTGGCGCGTCGACCTGGAAGACGTGCACATGAACATCGAGGCGCGC
CTGACCGACCGCATCGGCGTCACCGGCAAGAAGCTCCACACCGGTCGCTCGCGCAACGACCAGGTGGCCACC
GACATCCGCCTCTGGCTACGCGACGAGATCGACACCATCCTCGCCGAGATCACCCGCCTGCAGGAGGGCCTG
CTGGGCCTGGCCGAAGCGGAAGCCGACACCATCATGCCCGGTTTCACCCACCTGCAGACCGCCCAGCCGGTG
ACCTTCGGCCACCACCTGCTGGCCTGGTTCGAGATGCTCGGCCGCGACTACGAGCGCCTGGTCGACTGCCGC
AAGCGGGTCAACCGCATGCCGCTCGGCTCGGCGGCCCTGGCCGGCACCACCTACCCGATCCAGCGCGAGATC
ACCTGCCAGTTGCTGGGCTTCGACGCGGTTGGCGGCAACTCCCTGGACGGCGTCTCCGACCGCGACTTCGCC
ATCGAATTCTGCGCCGCCGCCAGCCTGGCGATGATGCACCTGTCGCGCTTCTCGGAAGAGCTGGTGCTGTGG
ACCAGCGCGCAGTTCCAGTTCATCGACCTGCCCGACCGCTTCTGCACCGGCTCCTCGATCATGCCGCAGAAG
AAGAACCCCGACGTGCCGGAGCTGGTACGCGGCAAGTCCGGCCGGGTGTTCGGCGCCCTCACCGGCTTGCTG
ACCCTGATGAAGGGCCAGCCGCTGGCCTACAACAAGGACAACCAGGAAGACAAGGAACCGCTGTTCGACGCC
GCCGACACCCTGCGCGACAGCCTGCGCGCCTTCGCCGACATGGTCCCGGCGATCCGGCCCCGGCGCGAGATC
ATGCGCGAGGCGGCACGCCGCGGTTTCTCCACCGCCACCGACCTGGCCGACTACCTGGTGCGCAAGGGCCTG
CCGTTCCGCGACTGCCACGAGATCGTCGGCCACGCAGTGAAGTACGGCGTGGACAGCGGCAAGGACCTCGCC
GAGATGAGCCTCGACGAACTGCGCCGCTTCAGCGAGCAGATCGACGCCGACGTCTTCGACGTGCTGACCCTG
GAAGGCTCGGTCAACGCCCGCGACCATATCGGCGGCACCGCGCCGAACCAGGTCCGTGCCGCCGTCGCCCGC
GGCCGGCAGTTGCTCGCCCAGCGCTGA