ViewGene
Locus Name:
GeneID:
Location:

GeneID:990
TrivialName: PA14_63480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63480
PAO1 Ortholog Locus:PA4804
Sequence Length:1398
Protein Length:465
Start: 5660739
Stop: 5659342
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08190.1|AE004893_8 (AE004893) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 461/465 (99%), Positives = 464/465 (99%)
Sequence:
ATGGACGACAACAAGAACAAGGTCCTGCGGTTGCGCGATGTGGTGCTCTACACGGTCTCGGCGATGCTCTTC
ATGGACCAGATCGCCCTGGCTTCCTCCCTCGGTCCGTCGAGCCTGTTCTGGTGGCTCTACGTTCTGCTCCTG
CTGTTCCTGCCGATGGCCATGATGACCTCCGAGCTGGGCACCGCCTTCCCCGCCAACGGCGGCGTCTACCAC
TGGGTGCGTAGCGCCTTCGGCTTCCGCTGGGGGGCCCGGGTGTCATGGATGTACTGGGTCAACAACGCACTG
TGGATGCCTTCGGTCTACACCTTGTTCGGCAGCATGCTCGGCGCCTTCTATTTCCCCGAGCTGAGCCTCTGG
GGCAAGATCGCCATCGGCATCGCCCTGGCGCTGCTCACCGCGGCGTTCAACGTGGTCGCGCTGCGCCTGGGC
AAGTGGCTGCCGAACCTCGGCGCGCTGCTCAAGCTGCTCGCGGTGCTCGCCCTGGGCGTCGGCGGCCTGCAC
TACGGCTGGAACCATGGCTTCGCCAACGACTTCAGCCTGGACTCCATCGTCCCGTCCTCGCCGGGCCAGATG
GCCGCGCTGGGAGTGATGGTCTACGGCATCATGGGGACCGAGCTGGCCTGTTGCAGCGCCGCGGAGATGCGC
AACGCGCGCCGCGATATCCCGCGCGCGGTGCTGATCTCCGGGCTGATCGTCGGCGCCTTCAACATCTTCGGC
ACCCTCGGCGTGCTGGCCGCGGTACCGGCCGAGGATACCGACGTCACCCGGATCTTCGCCCACACCCTCTAC
AACATCTACGGCCACGACGGCGCCGGCGGGATGCTCGCCGACCTGGTCGGCGCCTTCGTCCTGTTCACCCTC
TTCACCAACATGGTCACCTGGAGCATGGGCACCAACCGTGCCGCGGTGGAAGCGGCCAAGGCCGGCGAGCTG
CCGGCGCTGTTCGGCGTGGTCCATTCGCGCCACGGCACGCCGATCGGCTCGGCGGTGTTGGCCTCGGCGGTG
AGCATCGTCCTGCTGCTGCTCTACGGCCTGGTGGCGCACACTGCCGAGGAACTGTTCTGGACCCTGCTGTCG
ATCTTCGCCATGGTTTTCATGATGCCCTACGTGCTGATGTGCCTGGCCTTCGTCCGCCTGCGCCGCGCTGAC
CCGCGTCCACGGCCCTACCGGATGCCGCTGGGCGACCGCCTGGCCAGTCTCTGGGCGCTGTTCGTCGCGCTG
CATGTGCTGGCCGGCATCGGCCTGTTCGTCGTCACCCCAGGCGCGCCGATGGACTGGGCCTACGCCGGCAAG
ATCGTCGGCGGCGTGGCGCTGGCCCTGGCCGTGGGCGAACTGCTGATCCGCCAGGCGGCGCGAAGGCGCGGC
GTGATGTCGCTGCGCGGTGCCTACGGTTGA
Translation:
MDDNKNKVLRLRDVVLYTVSAMLFMDQIALASSLGPSSLFWWLYVLLLLFLPMAMMTSELGTAFPANGGVYH
WVRSAFGFRWGARVSWMYWVNNALWMPSVYTLFGSMLGAFYFPELSLWGKIAIGIALALLTAAFNVVALRLG
KWLPNLGALLKLLAVLALGVGGLHYGWNHGFANDFSLDSIVPSSPGQMAALGVMVYGIMGTELACCSAAEMR
NARRDIPRAVLISGLIVGAFNIFGTLGVLAAVPAEDTDVTRIFAHTLYNIYGHDGAGGMLADLVGAFVLFTL
FTNMVTWSMGTNRAAVEAAKAGELPALFGVVHSRHGTPIGSAVLASAVSIVLLLLYGLVAHTAEELFWTLLS
IFAMVFMMPYVLMCLAFVRLRRADPRPRPYRMPLGDRLASLWALFVALHVLAGIGLFVVTPGAPMDWAYAGK
IVGGVALALAVGELLIRQAARRRGVMSLRGAYG*
AnnotationID:999GeneID:990
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 05:05:30
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid permease
Cell Localization:()
Synonyms:PA4804
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0531,COG1113,pfam00324
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]
CD-Length = 466 residues,  95.3% aligned
Score =  129 bits (326), Expect = 5e-31
Identities = 104/450 (23%), Positives = 194/450 (43%), Gaps = 12/450 (2%)

pfam00324, AA_permease, Amino acid permease.
CD-Length = 473 residues,  96.8% aligned
Score = 98.8 bits (246), Expect = 1e-21
Identities = 87/463 (18%), Positives = 172/463 (37%), Gaps = 29/463 (6%)

COG1113, AnsP, Gamma-aminobutyrate permease and related permeases 
CD-Length = 462 residues,  93.1% aligned
Score = 84.1 bits (208), Expect = 3e-17
[Amino acid transport and metabolism]
Identities = 103/454 (22%), Positives = 191/454 (42%), Gaps = 41/454 (9%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1983




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19125




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35213




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:990_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:990
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1770
                           PA4804_tr
                           translation of PA4804
                           465
                           99.13
                           99.78
                           0
                           2377.0
     

     
     
62142
                           gb|AAG08190.1|AE004893_8
                           (AE004893) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           465
                           99.13
                           99.78
                           0
                           2377.0
     

     






      

          
GC ORFID: 43992How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4804Glimmer Score: 

          
Start: 4924419Stop: 4923022

          
Length: 1398


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4804 translation of PA4804Homolog Bit Score 920.0

          
Other Homologs:  t_PA4804 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACGACAACAAGAACAAGGTCCTGCGGTTGCGCGATGTGGTGCTCTACACGGTCTCGGCGATGCTCTTC 
ATGGACCAGATCGCCCTGGCTTCCTCCCTCGGTCCGTCGAGCCTGTTCTGGTGGCTCTACGTTCTGCTCCTG 
CTGTTCCTGCCGATGGCCATGATGACCTCCGAGCTGGGCACCGCCTTCCCCGCCAACGGCGGCGTCTACCAC 
TGGGTGCGTAGCGCCTTCGGCTTCCGCTGGGGGGCCCGGGTGTCATGGATGTACTGGGTCAACAACGCACTG 
TGGATGCCTTCGGTCTACACCTTGTTCGGCAGCATGCTCGGCGCCTTCTATTTCCCCGAGCTGAGCCTCTGG 
GGCAAGATCGCCATCGGCATCGCCCTGGCGCTGCTCACCGCGGCGTTCAACGTGGTCGCGCTGCGCCTGGGC 
AAGTGGCTGCCGAACCTCGGCGCGCTGCTCAAGCTGCTCGCGGTGCTCGCCCTGGGCGTCGGCGGCCTGCAC 
TACGGCTGGAACCATGGCTTCGCCAACGACTTCAGCCTGGACTCCATCGTCCCGTCCTCGCCGGGCCAGATG 
GCCGCGCTGGGAGTGATGGTCTACGGCATCATGGGGACCGAGCTGGCCTGTTGCAGCGCCGCGGAGATGCGC 
AACGCGCGCCGCGATATCCCGCGCGCGGTGCTGATCTCCGGGCTGATCGTCGGCGCCTTCAACATCTTCGGC 
ACCCTCGGCGTGCTGGCCGCGGTACCGGCCGAGGATACCGACGTCACCCGGATCTTCGCCCACACCCTCTAC 
AACATCTACGGCCACGACGGCGCCGGCGGGATGCTCGCCGACCTGGTCGGCGCCTTCGTCCTGTTCACCCTC 
TTCACCAACATGGTCACCTGGAGCATGGGCACCAACCGTGCCGCGGTGGAAGCGGCCAAGGCCGGCGAGCTG 
CCGGCGCTGTTCGGCGTGGTCCATTCGCGCCACGGCACGCCGATCGGCTCGGCGGTGTTGGCCTCGGCGGTG 
AGCATCGTCCTGCTGCTGCTCTACGGCCTGGTGGCGCACACTGCCGAGGAACTGTTCTGGACCCTGCTGTCG 
ATCTTCGCCATGGTTTTCATGATGCCCTACGTGCTGATGTGCCTGGCCTTCGTCCGCCTGCGCCGCGCTGAC 
CCGCGTCCACGGCCCTACCGGATGCCGCTGGGCGACCGCCTGGCCAGTCTCTGGGCGCTGTTCGTCGCGCTG 
CATGTGCTGGCCGGCATCGGCCTGTTCGTCGTCACCCCAGGCGCGCCGATGGACTGGGCCTACGCCGGCAAG 
ATCGTCGGCGGCGTGGCGCTGGCCCTGGCCGTGGGCGAACTGCTGATCCGCCAGGCGGCGCGAAGGCGCGGC 
GTGATGTCGCTGCGCGGTGCCTACGGTTGA