ViewGene
Locus Name:
GeneID:
Location:

GeneID:99
TrivialName: PA14_59800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59800
PAO1 Ortholog Locus:
Sequence Length:2796
Protein Length:931
Start: 5327621
Stop: 5324826
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84163.1| (AY273869) kinase sensor protein of two component regulatory system [Pseudomonas aeruginosa]
Identities = 928/931 (99%), Positives = 930/931 (99%)
Sequence:
ATGAAGTTGAAGAATTTCTTACAGCCTTTTGATAGCGGTTTCTCCACTCCGAGTGCTGCGCTCAAGCTGCTC
CGCATGCTCGGTGGCGCCTTGATGTTGTGCGTGCTATGCAGCCTGATATTCAGTGTGAGCATGGTTTTAAAC
CATCAGGTGTCCCTCAGTCGGCAAGCTATGAATGTGGCTATGTACGAAGCGCAGCTTTATTTCGAGCAGCGC
GAGGCGTTGCTCAATCACTTGAGCGGCAATGTCGTGCCCTTGGCCGCGGGTAGAGCGCTCGTCAACGAAGCG
CCGAACAATGTGAGCATCCTGCCGTTGAGTGACGGAGGGCGAGGTCTGCTATTGACCGCTCGCACGCTCGGT
GATCTCCGGGAAAAGCGGCTGGCACTGATGTATCTGGTCGATACCGACAAAGGCCCTCTGGTTTACCGGCTT
ACCGCCGATGGTAGGCCCTCGGCAGCGATATCCAGCACGATAACCAAAGAGGTGTACCGAGCCTTGCTGGCG
ACTCCGTCGGCGCCTGTTCACTGGGTGACTGACGGTGGTACCCCTCAACGGCTGTACCTTTTTGAATCCTTA
GGCGATGAGCCGGGCGAGGGGTGGCTAGGCCTGGAGATTCTCGGCGAAGACCTCGATTCGATGTTGCGCCGG
AATGATGCCGGAAACTACATGCTGCTGGATCAGCATGGGCAGGTCGTACTCGCTACGGACGCAGAGGCGCTG
GGGAGCGGTGCGTCGCGGACGCTTTTGCGTGGAGACGGCTTCGGTTTCATCGGTGCTGGCCCACTGCCGCAG
CATATGGTGCTTTTCCAGCACGTGGGGTCTTCGAGCTGGGATCTGATCTATCACATCGGTATCGGTCGCCTG
TTGCTGGCTCTGTGGCTCCCTCTGTTACTTGCCTCTGCGTTGGCACTCGCAGTCGGCATCCTACTGCATTGG
CTGGTGCGGAGCATCGAGCGACGCTTGATAGAGCCCGCAAAGCGACGCCTTGAAGCATTGAAGGAGAGCGAA
GCCTTTTCCCGTGCAGTTATCCAGGCCGCGCCCGTCGCGCTGTGCGTGCTGCGTCGTGCCGACGCCGCAGTG
GTCCTGGAAAATCCCCAGGCGCGCCAATGGCTGGGTGATAGCGAGGCGATTGCCCACGACGCGCCGAGATGG
ATTTCCCAGGCGTTCGCAGGAGGTGTGAAGTGTTCTGGAGAAGAACTGGAAACCGAGGCAGGGCTACATCTT
CATCTCAATTACACGCCCACCCGCTATAACGGTGAAGACGTATTGTTCTGCGCCTTCAGTGAAATCAGTGCA
CGCAAGCGGATGGAGGCGGAACTGGCTCGCGCAAAATCCCTGGCGGATGCTGCCAATGAAGCCAAGACGCTG
TTTCTCGCCACCATGAGCCATGAAATCCGCACACCTCTGTACGGCATGCTTGGCACGCTTGAGCTGCTTGGG
CGTACCGAGCTGAGTCGGCAGCAGGCCGGTTACCTAAAGGCAATCCAGCATTCCTCGTCGACCCTGCTGCAA
CTGATCAGCGATGTGCTTGACGTATCCAAGATAGAGGCCGGCCAACTGGACCTAGAGTGCGTGGAATTCTCC
CCGCTGGAATTGACCGAAGAGGTCGTGCAGTCGTTCACCGGTGCCGCGCAGGCCAAGGGGCTGCAGTTGTAT
ACCTGCCTCTCTGCGGAGCTGCCGCTGCGCATGCGGGGGGCCGCGGCGTCGATCCGGCAGATTCTCAACAAC
CTGCTGAGCAACGCGGTGAAGTTCACCGACAATGGCTATGTCAACGTCCACCTGAAGGCCAGCGTGGTCGAT
GCCGAATGTGTGATGCTGACCTGGCAGGTCAACGATACCGGCATGGGGATCAACGTCGAGGATCAGCCGCGT
CTGTTCGAACCGTTCTACCAGATACGCCGCTCCGAGCATCCGGTCGCAGGCACGGGCCTCGGCTTGTCGATC
AGCCAGCGCCTGGCGCAGCTAATGAATGGCAGTCTGAAACTGGTCAGTGAGCTGGGGTTGGGCAGCAGCTTT
AGCCTCAGGCTTCCGCTTGAGCGGATCGCGATGCAGGCTGAGCCGCAGGACCTAGCCGGGTGCGCCGTCCAA
GTGCTGGCGCCTGTCCGCGACCTAACGGAATGCCTGTGTGGCTGGATCTCCCGCTGGGGTGGAAGGGCCATG
GTCGCGACGCCGAGGTCGCTGGACGAGGCGGACGCGACCTCGCTGCTGGTCGAAGTGTTACTGCTGGAGGGG
GCGCCGATGTTCGAAGCATGGCCAGGATGCCGGGTGGAGCTTTCCCCTCAGGGTGATATGGAGCCGCAGGCA
CAGGGCCGCGACTGGCTGCTCGGGCTCAACAACCTGGACGGCCTGCATCGTGCTCTGGGCCTGGCCCATGGG
CGTCTCGCTGATCCTTCGACGCCGCCGATACGGCTGGCTCCGTTGCGCAATCTAGGTCTCCGCGTCCTAGTG
GTGGAGGATAACGCGATCAACCAGTTGATCTTGAGGGACCAGATGGAAGCGCTGGGCTGCAGCGTGGAGCTG
CTCTTCGATGGTCGCGAGGCGTTGCTGCACTGCCAGACGGCCTGCTTCGACGTGGTGCTCACCGATATCAAC
ATGCCGAACATGAACGGATACGAGCTAACCGCGGAGCTACGGCGCCAAGGGTTCCGGCAGCCGATCATCGGC
GCGACGGCGAACGCCATGCGTGAGGAGCGCGAGCGCTGCATGTCCGCCGGGATGAACGATTGCCTGGTCAAA
CCGGTGGATCTGAATGCCCTTCAGAACTGCTTGATTAATATTCTCAAGGTGGATCGATGA
Translation:
MKLKNFLQPFDSGFSTPSAALKLLRMLGGALMLCVLCSLIFSVSMVLNHQVSLSRQAMNVAMYEAQLYFEQR
EALLNHLSGNVVPLAAGRALVNEAPNNVSILPLSDGGRGLLLTARTLGDLREKRLALMYLVDTDKGPLVYRL
TADGRPSAAISSTITKEVYRALLATPSAPVHWVTDGGTPQRLYLFESLGDEPGEGWLGLEILGEDLDSMLRR
NDAGNYMLLDQHGQVVLATDAEALGSGASRTLLRGDGFGFIGAGPLPQHMVLFQHVGSSSWDLIYHIGIGRL
LLALWLPLLLASALALAVGILLHWLVRSIERRLIEPAKRRLEALKESEAFSRAVIQAAPVALCVLRRADAAV
VLENPQARQWLGDSEAIAHDAPRWISQAFAGGVKCSGEELETEAGLHLHLNYTPTRYNGEDVLFCAFSEISA
RKRMEAELARAKSLADAANEAKTLFLATMSHEIRTPLYGMLGTLELLGRTELSRQQAGYLKAIQHSSSTLLQ
LISDVLDVSKIEAGQLDLECVEFSPLELTEEVVQSFTGAAQAKGLQLYTCLSAELPLRMRGAAASIRQILNN
LLSNAVKFTDNGYVNVHLKASVVDAECVMLTWQVNDTGMGINVEDQPRLFEPFYQIRRSEHPVAGTGLGLSI
SQRLAQLMNGSLKLVSELGLGSSFSLRLPLERIAMQAEPQDLAGCAVQVLAPVRDLTECLCGWISRWGGRAM
VATPRSLDEADATSLLVEVLLLEGAPMFEAWPGCRVELSPQGDMEPQAQGRDWLLGLNNLDGLHRALGLAHG
RLADPSTPPIRLAPLRNLGLRVLVVEDNAINQLILRDQMEALGCSVELLFDGREALLHCQTACFDVVLTDIN
MPNMNGYELTAELRRQGFRQPIIGATANAMREERERCMSAGMNDCLVKPVDLNALQNCLINILKVDR*
AnnotationID:109GeneID:99
AnnotatorUID: diggins
Modification Date/Time: 2006-01-30 21:09:54
Gene Name:
Confidence Code:3
GeneProduct:kinase sensor protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00387,cd00156
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO68299.1| (AE016836) sensor protein RcsC [Salmonella enterica subsp. enterica
           serovar Typhi Ty2]
          Length = 948

 Score =  361 bits (927), Expect = 1e-98
 Identities = 232/715 (32%), Positives = 396/715 (55%), Gaps = 39/715 (5%)

>gb|AAN81215.1|AE016763_174 (AE016763) Sensor protein rcsC [Escherichia coli CFT073]
          Length = 949

 Score =  360 bits (925), Expect = 2e-98
 Identities = 276/960 (28%), Positives = 474/960 (49%), Gaps = 83/960 (8%)






 
Structural Features:
smart00387, HATPase_c, Histidine kinase-like ATPases
CD-Length = 112 residues, 100.0% aligned
Score =  106 bits (267), Expect = 9e-24
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 4/116 (3%)

cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  103 bits (257), Expect = 1e-22
Identities = 39/113 (34%), Positives = 58/113 (51%)






   
Genomic Context:






   
Comment:


















    ReferenceID:201




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17086




  
Author/Investigator(s):
        





  
Title:
        CDD- Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:NCBI CD-99.htm


    		




 
URL:

















    ReferenceID:17343




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:99
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
14635
                           gb|AAP84163.1|
                           (AY273869) kinase sensor protein of two component regulatory system [Pseudomonas aeruginosa]
                           931
                           99.67
                           99.89
                           0
                           4722.0
     

     
     
14636
                           gb|AAM15532.1|AF482691_1
                           (AF482691) probable sensor/response regulator hybrid [Pseudomonas aeruginosa]
                           931
                           49.94
                           50.05
                           462
                           2371.0
     

     
     
14637
                           gb|AAP84165.1|
                           (AY273869) RcsC [Pseudomonas aeruginosa]
                           1132
                           32.42
                           43.81
                           249
                           1358.0
     

     
     
14695
                           gb|AAG05971.1|AE004686_9
                           (AE004686) probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
                           1157
                           25.66
                           36.21
                           391
                           559.0
     

     
     
195
                           PA2583_tr
                           translation of PA2583
                           1157
                           25.66
                           36.21
                           391
                           559.0
     

     






      

          
GC ORFID: 43101How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL036Glimmer Score: 

          
Start: 4591300Stop: 4588505

          
Length: 2796


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL036 931 Homolog: RcsC (ORF1) / Pathogenicity-related protein; a sensor of two component system / ORF1 / P.aeruginosa / PA14 // rcsC / S.enterica subsp. Enterica serovar Typhi / CT18 / (AAM15532 / CAD07502) translation of RL036Homolog Bit Score 1823.0

          
Other Homologs:  t_RL036 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGTTGAAGAATTTCTTACAGCCTTTTGATAGCGGTTTCTCCACTCCGAGTGCTGCGCTCAAGCTGCTC 
CGCATGCTCGGTGGCGCCTTGATGTTGTGCGTGCTATGCAGCCTGATATTCAGTGTGAGCATGGTTTTAAAC 
CATCAGGTGTCCCTCAGTCGGCAAGCTATGAATGTGGCTATGTACGAAGCGCAGCTTTATTTCGAGCAGCGC 
GAGGCGTTGCTCAATCACTTGAGCGGCAATGTCGTGCCCTTGGCCGCGGGTAGAGCGCTCGTCAACGAAGCG 
CCGAACAATGTGAGCATCCTGCCGTTGAGTGACGGAGGGCGAGGTCTGCTATTGACCGCTCGCACGCTCGGT 
GATCTCCGGGAAAAGCGGCTGGCACTGATGTATCTGGTCGATACCGACAAAGGCCCTCTGGTTTACCGGCTT 
ACCGCCGATGGTAGGCCCTCGGCAGCGATATCCAGCACGATAACCAAAGAGGTGTACCGAGCCTTGCTGGCG 
ACTCCGTCGGCGCCTGTTCACTGGGTGACTGACGGTGGTACCCCTCAACGGCTGTACCTTTTTGAATCCTTA 
GGCGATGAGCCGGGCGAGGGGTGGCTAGGCCTGGAGATTCTCGGCGAAGACCTCGATTCGATGTTGCGCCGG 
AATGATGCCGGAAACTACATGCTGCTGGATCAGCATGGGCAGGTCGTACTCGCTACGGACGCAGAGGCGCTG 
GGGAGCGGTGCGTCGCGGACGCTTTTGCGTGGAGACGGCTTCGGTTTCATCGGTGCTGGCCCACTGCCGCAG 
CATATGGTGCTTTTCCAGCACGTGGGGTCTTCGAGCTGGGATCTGATCTATCACATCGGTATCGGTCGCCTG 
TTGCTGGCTCTGTGGCTCCCTCTGTTACTTGCCTCTGCGTTGGCACTCGCAGTCGGCATCCTACTGCATTGG 
CTGGTGCGGAGCATCGAGCGACGCTTGATAGAGCCCGCAAAGCGACGCCTTGAAGCATTGAAGGAGAGCGAA 
GCCTTTTCCCGTGCAGTTATCCAGGCCGCGCCCGTCGCGCTGTGCGTGCTGCGTCGTGCCGACGCCGCAGTG 
GTCCTGGAAAATCCCCAGGCGCGCCAATGGCTGGGTGATAGCGAGGCGATTGCCCACGACGCGCCGAGATGG 
ATTTCCCAGGCGTTCGCAGGAGGTGTGAAGTGTTCTGGAGAAGAACTGGAAACCGAGGCAGGGCTACATCTT 
CATCTCAATTACACGCCCACCCGCTATAACGGTGAAGACGTATTGTTCTGCGCCTTCAGTGAAATCAGTGCA 
CGCAAGCGGATGGAGGCGGAACTGGCTCGCGCAAAATCCCTGGCGGATGCTGCCAATGAAGCCAAGACGCTG 
TTTCTCGCCACCATGAGCCATGAAATCCGCACACCTCTGTACGGCATGCTTGGCACGCTTGAGCTGCTTGGG 
CGTACCGAGCTGAGTCGGCAGCAGGCCGGTTACCTAAAGGCAATCCAGCATTCCTCGTCGACCCTGCTGCAA 
CTGATCAGCGATGTGCTTGACGTATCCAAGATAGAGGCCGGCCAACTGGACCTAGAGTGCGTGGAATTCTCC 
CCGCTGGAATTGACCGAAGAGGTCGTGCAGTCGTTCACCGGTGCCGCGCAGGCCAAGGGGCTGCAGTTGTAT 
ACCTGCCTCTCTGCGGAGCTGCCGCTGCGCATGCGGGGGGCCGCGGCGTCGATCCGGCAGATTCTCAACAAC 
CTGCTGAGCAACGCGGTGAAGTTCACCGACAATGGCTATGTCAACGTCCACCTGAAGGCCAGCGTGGTCGAT 
GCCGAATGTGTGATGCTGACCTGGCAGGTCAACGATACCGGCATGGGGATCAACGTCGAGGATCAGCCGCGT 
CTGTTCGAACCGTTCTACCAGATACGCCGCTCCGAGCATCCGGTCGCAGGCACGGGCCTCGGCTTGTCGATC 
AGCCAGCGCCTGGCGCAGCTAATGAATGGCAGTCTGAAACTGGTCAGTGAGCTGGGGTTGGGCAGCAGCTTT 
AGCCTCAGGCTTCCGCTTGAGCGGATCGCGATGCAGGCTGAGCCGCAGGACCTAGCCGGGTGCGCCGTCCAA 
GTGCTGGCGCCTGTCCGCGACCTAACGGAATGCCTGTGTGGCTGGATCTCCCGCTGGGGTGGAAGGGCCATG 
GTCGCGACGCCGAGGTCGCTGGACGAGGCGGACGCGACCTCGCTGCTGGTCGAAGTGTTACTGCTGGAGGGG 
GCGCCGATGTTCGAAGCATGGCCAGGATGCCGGGTGGAGCTTTCCCCTCAGGGTGATATGGAGCCGCAGGCA 
CAGGGCCGCGACTGGCTGCTCGGGCTCAACAACCTGGACGGCCTGCATCGTGCTCTGGGCCTGGCCCATGGG 
CGTCTCGCTGATCCTTCGACGCCGCCGATACGGCTGGCTCCGTTGCGCAATCTAGGTCTCCGCGTCCTAGTG 
GTGGAGGATAACGCGATCAACCAGTTGATCTTGAGGGACCAGATGGAAGCGCTGGGCTGCAGCGTGGAGCTG 
CTCTTCGATGGTCGCGAGGCGTTGCTGCACTGCCAGACGGCCTGCTTCGACGTGGTGCTCACCGATATCAAC 
ATGCCGAACATGAACGGATACGAGCTAACCGCGGAGCTACGGCGCCAAGGGTTCCGGCAGCCGATCATCGGC 
GCGACGGCGAACGCCATGCGTGAGGAGCGCGAGCGCTGCATGTCCGCCGGGATGAACGATTGCCTGGTCAAA 
CCGGTGGATCTGAATGCCCTTCAGAACTGCTTGATTAATATTCTCAAGGTGGATCGATGA