ViewGene

Locus Name:
GeneID:
Location:

GeneID:989
TrivialName: PA14_22960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22960
PAO1 Ortholog Locus:PA3191
Sequence Length:1422
Protein Length:473
Start: 1990360
Stop: 1991781
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06579.1|AE004743_2 (AE004743) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 471/473 (99%), Positives = 472/473 (99%)
Sequence:
GTGCCGCGCTCGCTGCTCGGGCGCATGCTGCTCCTGACCCTGCTCGCGGTGCTGGTCGCGCAAGGGCTTTCC
AGCCTGTTCTGGCTGTCGCACCTGCGCTCCAGCCAGCGCGAGGGCCTGCTCACCAGCTCGCGCAGCCTGGCC
TACTCGATGGCGGCCAGCGTCAGCTACTTCCGTTCCCTGCCGCTCGGCTACCGTCCGCTGGTGCTCGACCAG
TTGCGCAGCATGGGCGGTACGCGCTTCTTCGTCTCGCTGAACGACCGGCCGCTGGAGATGCGTGCCCTGCCG
GACACGCCGAACAAGCAGGCGGTGCTGGAGATCGTCCAGGACGTGTTGCATCAACGCCTGGGCAAGGAGGTC
GAGCTGCAGGTCGAATTCGTCAGTCCCGACGAGCTGCGCCTGTTCAACGGCGCGCTGAAGCTCGACGAGCTG
CCGCGTTCCTGGGCGCACTACGCGCTGACCCTGGAGCCGGTGAACCCGCCGGTGCTGGTGACCCAGATCCGC
ATCGGCGACAGCGAGTGGCTGTACATCGCCAGCCTGATGCCGGCGCCGTACGTCAGCCTGGAACCCGAGGGA
CTGCAACCGCAGCAGGTGCTCTCGATCGTTTTCACCAGCCTGTTGCTGCTGCTTTTCACCGGCTTGCTGATG
CATTGGCAGAGCCGTCCGCTCAAGCGCCTGGCGCGCGCCGCCCGCGACCTGGCCCTGGGCAGTCCGTCGGCA
GCGCTGGAGGAACGCGGCGCCAGCGAACTGGTGGAGGTGGCGCGCGCCTTCAACACCATGCACGAGCGCATC
GACCGCTACCTGAACGAGCGCGGGCAGTTGTTCAGCGCCATCTCCCACGACCTGCGCACGCCGATCACCCGC
CTGCGCCTGCGGGTAGAACTCCTCGAGGACGAGCGCTTGCAGGAGAAGTTCGGGCGCGACCTGGACGAGCTG
GAACTGCTGGTGAAGGGCGCGCTGCAGTGCGTGAAGGACACCGATATCCACGAGAACGTCGAGCCGGTCGAC
CTCAACCTGTTGCTCCAGCACATCGCCGAGCCCTACCTGGCCGATGGCCGGGTGGAGGTCGTCGGTCGCGCC
GCGGAGCCTTATCCGGGCAAGCCCCTGGCGCTCAAGCGCTGTATCGGCAACCTGCTGGACAATGCGCTGAAA
TACGGCGAACGCGCCCGCCTGAGCCTGGAGGACGGACCGGAAGCGGTGGTGCTGCACGTCGACGACGACGGC
CCCGGCGTGCCCGAGCAGCGCCTGGAACAGATCTTCGAGCCGCGCTTCCGCCTGTCTCCGCGAGGGCAGGGC
TACGGGCTGGGCCTGGGCATCGCGCGCAACATCGCGCACACCCATGGCGGCGAAGTCAGTTTGCAGAACCGT
CGCGAGGGCGGCCTGCGGGTCAGCCTGCGCTTGCCGCGCCTGGGGCTGGAGTGA
Translation:
MPRSLLGRMLLLTLLAVLVAQGLSSLFWLSHLRSSQREGLLTSSRSLAYSMAASVSYFRSLPLGYRPLVLDQ
LRSMGGTRFFVSLNDRPLEMRALPDTPNKQAVLEIVQDVLHQRLGKEVELQVEFVSPDELRLFNGALKLDEL
PRSWAHYALTLEPVNPPVLVTQIRIGDSEWLYIASLMPAPYVSLEPEGLQPQQVLSIVFTSLLLLLFTGLLM
HWQSRPLKRLARAARDLALGSPSAALEERGASELVEVARAFNTMHERIDRYLNERGQLFSAISHDLRTPITR
LRLRVELLEDERLQEKFGRDLDELELLVKGALQCVKDTDIHENVEPVDLNLLLQHIAEPYLADGRVEVVGRA
AEPYPGKPLALKRCIGNLLDNALKYGERARLSLEDGPEAVVLHVDDDGPGVPEQRLEQIFEPRFRLSPRGQG
YGLGLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPRLGLE*
AnnotationID:998GeneID:989
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 16:04:40
Gene Name:
Confidence Code:3
GeneProduct:putative two-component sensor
Cell Localization:()
Synonyms:PA3191
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative signal transduction histidine kinase
Functional Category Confidence Code:5
COGs:COG0642
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66638.1|AE016291_7 (AE016777) sensor histidine kinase [Pseudomonas putida KT2440]
          Length = 484

 Score =  699 bits (1805), Expect = 0.0
 Identities = 348/469 (74%), Positives = 403/469 (85%)

>gb|AAO08579.1|AE016797_34 (AE016797) Signal transduction histidine kinase [Vibrio vulnificus
           CMCP6]
          Length = 478

 Score =  477 bits (1228), Expect = e-134
 Identities = 237/473 (50%), Positives = 337/473 (71%), Gaps = 2/473 (0%)

>dbj|BAC63007.1| (AP005089) putative two-component sensor [Vibrio parahaemolyticus]
          Length = 476

 Score =  409 bits (1052), Expect = e-113
 Identities = 202/467 (43%), Positives = 317/467 (67%), Gaps = 1/467 (0%)

Structural Features:
COG0642, BaeS, Signal transduction histidine kinase 
[Signal transduction mechanisms]
CD-Length = 336 residues,  86.0% aligned
Score =  128 bits (320), Expect = 2e-30
Identities = 97/290 (33%), Positives = 142/290 (48%), Gaps = 18/290 (6%)
Genomic Context:
Comment:
ReferenceID:14265
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19123
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32352
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:989_cdd.html
URL:
Homologs By Global Alignment
Gene ID:989

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1769 PA3191_tr translation of PA3191 473 99.57 99.78 0 2377.0
62135 gb|AAG06579.1|AE004743_2 (AE004743) probable two-component sensor [Pseudomonas aeruginosa PAO1] 473 99.36 99.78 0 2374.0
62136 gb|AAN66638.1|AE016291_7 (AE016777) sensor histidine kinase [Pseudomonas putida KT2440] 485 71.95 83.71 13 1804.0
62137 gb|AAO54815.1| (AE016860) sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000] 477 71.27 80.29 13 1698.0
62138 gb|AAO08579.1|AE016797_34 (AE016797) Signal transduction histidine kinase [Vibrio vulnificus CMCP6] 479 49.47 70.35 7 1229.0
GC ORFID: 43991How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3191Glimmer Score:
Start: 2963571Stop: 2962150
Length: 1422
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3191 translation of PA3191Homolog Bit Score 920.0
Other Homologs: t_PA3191 (ORF: GLIMMER)
GC ORF Sequence
GTGCCGCGCTCGCTGCTCGGGCGCATGCTGCTCCTGACCCTGCTCGCGGTGCTGGTCGCGCAAGGGCTTTCC
AGCCTGTTCTGGCTGTCGCACCTGCGCTCCAGCCAGCGCGAGGGCCTGCTCACCAGCTCGCGCAGCCTGGCC
TACTCGATGGCGGCCAGCGTCAGCTACTTCCGTTCCCTGCCGCTCGGCTACCGTCCGCTGGTGCTCGACCAG
TTGCGCAGCATGGGCGGTACGCGCTTCTTCGTCTCGCTGAACGACCGGCCGCTGGAGATGCGTGCCCTGCCG
GACACGCCGAACAAGCAGGCGGTGCTGGAGATCGTCCAGGACGTGTTGCATCAACGCCTGGGCAAGGAGGTC
GAGCTGCAGGTCGAATTCGTCAGTCCCGACGAGCTGCGCCTGTTCAACGGCGCGCTGAAGCTCGACGAGCTG
CCGCGTTCCTGGGCGCACTACGCGCTGACCCTGGAGCCGGTGAACCCGCCGGTGCTGGTGACCCAGATCCGC
ATCGGCGACAGCGAGTGGCTGTACATCGCCAGCCTGATGCCGGCGCCGTACGTCAGCCTGGAACCCGAGGGA
CTGCAACCGCAGCAGGTGCTCTCGATCGTTTTCACCAGCCTGTTGCTGCTGCTTTTCACCGGCTTGCTGATG
CATTGGCAGAGCCGTCCGCTCAAGCGCCTGGCGCGCGCCGCCCGCGACCTGGCCCTGGGCAGTCCGTCGGCA
GCGCTGGAGGAACGCGGCGCCAGCGAACTGGTGGAGGTGGCGCGCGCCTTCAACACCATGCACGAGCGCATC
GACCGCTACCTGAACGAGCGCGGGCAGTTGTTCAGCGCCATCTCCCACGACCTGCGCACGCCGATCACCCGC
CTGCGCCTGCGGGTAGAACTCCTCGAGGACGAGCGCTTGCAGGAGAAGTTCGGGCGCGACCTGGACGAGCTG
GAACTGCTGGTGAAGGGCGCGCTGCAGTGCGTGAAGGACACCGATATCCACGAGAACGTCGAGCCGGTCGAC
CTCAACCTGTTGCTCCAGCACATCGCCGAGCCCTACCTGGCCGATGGCCGGGTGGAGGTCGTCGGTCGCGCC
GCGGAGCCTTATCCGGGCAAGCCCCTGGCGCTCAAGCGCTGTATCGGCAACCTGCTGGACAATGCGCTGAAA
TACGGCGAACGCGCCCGCCTGAGCCTGGAGGACGGACCGGAAGCGGTGGTGCTGCACGTCGACGACGACGGC
CCCGGCGTGCCCGAGCAGCGCCTGGAACAGATCTTCGAGCCGCGCTTCCGCCTGTCTCCGCGAGGGCAGGGC
TACGGGCTGGGCCTGGGCATCGCGCGCAACATCGCGCACACCCATGGCGGCGAAGTCAGTTTGCAGAACCGT
CGCGAGGGCGGCCTGCGGGTCAGCCTGCGCTTGCCGCGCCTGGGGCTGGAGTGA