ViewGene
Locus Name:
GeneID:
Location:

GeneID:988
TrivialName: PA14_34290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34290
PAO1 Ortholog Locus:PA2348
Sequence Length:1389
Protein Length:462
Start: 3050036
Stop: 3048648
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05736.1|AE004661_3 (AE004661) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 460/462 (99%), Positives = 460/462 (99%)
Sequence:
ATGAGCAAGAAGCAGATTCTCCTAAACGCCTTCAGCATGAATTGCGTCGGCCATATCAACCACGGCCTCTGG
ACCCACCCGCGCGACCGCTCCAGCGACTACCGCAAACTGCGCCACTGGACCGAGCTGGCCCGGCTGCTGGAG
CGCGGCCTGTTCGACGGCCTGTTCATCGCCGATATCCTCGGCGTCTACGACGTCTACCAGGGCGGCATCGAG
GTGACCGCCCGCGAAGCCGTCCAGTTGCCGGTGAACGACCCGCTGATGCTGGTCTCGGCCATGGCCGGGGTC
ACCGAGCACCTGGGTTTCGGCGTCACCGCCAACCTCACCTACGAGGCGCCCTACCCGTTCGCCCGGCGGCTC
TCGACCCTCGACCACCTGAGCGACGGGCGGATCGGCTGGAACATCGTCACCGGCTACCTGGAAAGCGCGGCC
AAGGCCATGGGCCAGTCCGCGCAGATCGAGCACGACCGCCGCTACGACCGCGCCGACGAGTACCTGGAGGTC
CTCTACAAGCTCTGGGAGGGCAGCTGGGAAGACGACGCGGTGCTCGCCGACCGCCAGCGACGGGTCTACGCG
CGGCCGGAGAAGATCCACAAGATCCGCCACCATGGCGAGTTCTACCAGGTCGAGGGCTACCACCTCGCCGAG
CCCTCTCCACAGCGCACCCCGGTGCTGTTCCAGGCCGGCTCCTCGGAGCGTGGCCTGGCCTTCGCCGCGCGC
CACGCCGAATGCGTGTTCGTCTCCGGACAGACCCGCGAGGCCACCCGCCAACTGGTGCAGCGCATCCGCGCG
GCGGTGGTCGGCGCCGGCCGTCGCGCCGAGGACATCAGGATCTTCATGGGTATCAACGTGATCGTCGCCGCC
ACCGCGGCCGAGGCCCGCGACAAGCATGCCGAGTACCGCCGCTACGCCAGCCCCGAGGCCGGCCTGGCGCAC
TTCGCCAGCTCCAGCGGCATCGACCTGTCGCGCTACGGGCTCGACGAACCGATCCGCTACGAGAAGAACAAC
GCCATCGAGTCGGTGGTGAAGAACCTCACCGTGGCGCGCACCGACTCCACCGTGCGCAAGCTCCTCGATCAG
TTGGCCCTGGGCGGCCGCTACGTGACCCTGGTAGGCGACCCGCGCCAGGTCGCCGACGATCTCGAAGGCTGG
ATCGCCGATACCGGCCTGGACGGCTTCAACCTGACCCGCACCGTGGAGCCGGAGAGCTACGCCGACTTCATC
GACCTGGTGGTGCCCGAGTTGCAGGCACGCGGCAGCTACAAGACCGCCTACGCCCCCGGCACCCTGCGGGAG
AAGCTCTTCGGCGGCGGCCGCGCGCGCCTGCAGGCGGAACACGCCGGCGCCGCCTTCCGCCAGCCCCCAGCC
GCGCACCAGCGCCAGGCCTGA
Translation:
MSKKQILLNAFSMNCVGHINHGLWTHPRDRSSDYRKLRHWTELARLLERGLFDGLFIADILGVYDVYQGGIE
VTAREAVQLPVNDPLMLVSAMAGVTEHLGFGVTANLTYEAPYPFARRLSTLDHLSDGRIGWNIVTGYLESAA
KAMGQSAQIEHDRRYDRADEYLEVLYKLWEGSWEDDAVLADRQRRVYARPEKIHKIRHHGEFYQVEGYHLAE
PSPQRTPVLFQAGSSERGLAFAARHAECVFVSGQTREATRQLVQRIRAAVVGAGRRAEDIRIFMGINVIVAA
TAAEARDKHAEYRRYASPEAGLAHFASSSGIDLSRYGLDEPIRYEKNNAIESVVKNLTVARTDSTVRKLLDQ
LALGGRYVTLVGDPRQVADDLEGWIADTGLDGFNLTRTVEPESYADFIDLVVPELQARGSYKTAYAPGTLRE
KLFGGGRARLQAEHAGAAFRQPPAAHQRQA*
AnnotationID:997GeneID:988
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:22
Gene Name:
Confidence Code:3
GeneProduct:putative monooxygenase, DszA family
Cell Localization:()
Synonyms:PA2348
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:putative flavin-dependent oxidoreductase
Functional Category Confidence Code:5
COGs:COG2141
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58612.1| (AE016874) monooxygenase, DszA family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 452

 Score =  689 bits (1777), Expect = 0.0
 Identities = 328/452 (72%), Positives = 390/452 (86%), Gaps = 2/452 (0%)

>gb|AAN65854.1|AE016213_10 (AE016774) monooxygenase, DszA family [Pseudomonas putida KT2440]
          Length = 461

 Score =  638 bits (1646), Expect = 0.0
 Identities = 311/452 (68%), Positives = 367/452 (81%), Gaps = 2/452 (0%)








 
Structural Features:
COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin 
reductase and related flavin-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 336 residues,  99.1% aligned
Score =  180 bits (458), Expect = 3e-46
Identities = 110/401 (27%), Positives = 155/401 (38%), Gaps = 71/401 (17%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1979




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19121




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32896




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:988_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:988
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1767
                           PA2348_tr
                           translation of PA2348
                           462
                           99.56
                           99.56
                           0
                           2377.0
     

     
     
62120
                           gb|AAG05736.1|AE004661_3
                           (AE004661) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           462
                           99.56
                           99.56
                           0
                           2377.0
     

     
     
62121
                           gb|AAO58612.1|
                           (AE016874) monooxygenase, DszA family [Pseudomonas syringae pv. tomato str. DC3000]
                           462
                           70.99
                           84.41
                           10
                           1776.0
     

     
     
62122
                           gb|AAN65854.1|AE016213_10
                           (AE016774) monooxygenase, DszA family [Pseudomonas putida KT2440]
                           468
                           67.09
                           79.27
                           13
                           1647.0
     

     
     
1768
                           PA2326_tr
                           translation of PA2326
                           472
                           55.29
                           69.91
                           13
                           1332.0
     

     






      

          
GC ORFID: 43990How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2348Glimmer Score: 

          
Start: 1903880Stop: 1905268

          
Length: 1389


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2348 translation of PA2348Homolog Bit Score 920.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3830 (ORF: BLASTX 699.0), t_PA2326 (ORF: BLASTX 516.0), psyr_15may02_Scaffold7_revised_gene7332 (ORF: BLASTX 510.0), t_PA2348 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAAGAAGCAGATTCTCCTAAACGCCTTCAGCATGAATTGCGTCGGCCATATCAACCACGGCCTCTGG 
ACCCACCCGCGCGACCGCTCCAGCGACTACCGCAAACTGCGCCACTGGACCGAGCTGGCCCGGCTGCTGGAG 
CGCGGCCTGTTCGACGGCCTGTTCATCGCCGATATCCTCGGCGTCTACGACGTCTACCAGGGCGGCATCGAG 
GTGACCGCCCGCGAAGCCGTCCAGTTGCCGGTGAACGACCCGCTGATGCTGGTCTCGGCCATGGCCGGGGTC 
ACCGAGCACCTGGGTTTCGGCGTCACCGCCAACCTCACCTACGAGGCGCCCTACCCGTTCGCCCGGCGGCTC 
TCGACCCTCGACCACCTGAGCGACGGGCGGATCGGCTGGAACATCGTCACCGGCTACCTGGAAAGCGCGGCC 
AAGGCCATGGGCCAGTCCGCGCAGATCGAGCACGACCGCCGCTACGACCGCGCCGACGAGTACCTGGAGGTC 
CTCTACAAGCTCTGGGAGGGCAGCTGGGAAGACGACGCGGTGCTCGCCGACCGCCAGCGACGGGTCTACGCG 
CGGCCGGAGAAGATCCACAAGATCCGCCACCATGGCGAGTTCTACCAGGTCGAGGGCTACCACCTCGCCGAG 
CCCTCTCCACAGCGCACCCCGGTGCTGTTCCAGGCCGGCTCCTCGGAGCGTGGCCTGGCCTTCGCCGCGCGC 
CACGCCGAATGCGTGTTCGTCTCCGGACAGACCCGCGAGGCCACCCGCCAACTGGTGCAGCGCATCCGCGCG 
GCGGTGGTCGGCGCCGGCCGTCGCGCCGAGGACATCAGGATCTTCATGGGTATCAACGTGATCGTCGCCGCC 
ACCGCGGCCGAGGCCCGCGACAAGCATGCCGAGTACCGCCGCTACGCCAGCCCCGAGGCCGGCCTGGCGCAC 
TTCGCCAGCTCCAGCGGCATCGACCTGTCGCGCTACGGGCTCGACGAACCGATCCGCTACGAGAAGAACAAC 
GCCATCGAGTCGGTGGTGAAGAACCTCACCGTGGCGCGCACCGACTCCACCGTGCGCAAGCTCCTCGATCAG 
TTGGCCCTGGGCGGCCGCTACGTGACCCTGGTAGGCGACCCGCGCCAGGTCGCCGACGATCTCGAAGGCTGG 
ATCGCCGATACCGGCCTGGACGGCTTCAACCTGACCCGCACCGTGGAGCCGGAGAGCTACGCCGACTTCATC 
GACCTGGTGGTGCCCGAGTTGCAGGCACGCGGCAGCTACAAGACCGCCTACGCCCCCGGCACCCTGCGGGAG 
AAGCTCTTCGGCGGCGGCCGCGCGCGCCTGCAGGCGGAACACGCCGGCGCCGCCTTCCGCCAGCCCCCAGCC 
GCGCACCAGCGCCAGGCCTGA