ViewGene
Locus Name:
GeneID:
Location:

GeneID:987
TrivialName: PA14_50450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50450
PAO1 Ortholog Locus:PA1080
Sequence Length:1389
Protein Length:462
Start: 4484045
Stop: 4482657
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04469.1|AE004539_11 (AE004539) flagellar hook protein FlgE [Pseudomonas aeruginosa PAO1]
Identities = 461/462 (99%), Positives = 462/462 (100%)
Sequence:
ATGAGTTTCAACATCGGCCTGAGCGGCATCCAGGCGGCCTCCAGCGGCCTGAACGTCACCGGCAACAACATC
GCCAACGCCGGCACCGTAGGCTTCAAGCAATCCCGCGCGGAGTTCGCCGACGTCTACGCCGCCTCGGTGCTG
GGTTCGGGCAGCAACCCGCAGGGCAGCGGCGTGCTGCTCTCGGACGTCTCGCAGATGTTCAAGCAGGGCAAC
ATCGACTCGACCAACAGCGTGCTGGACCTGGCCATCAACGGCAACGGCTTCTTCGTCACCAGCAACAACGGG
GCGATCAGCTACACCCGCGCCGGCTACTTCAATACCGACAAGCAGGATTTCATCGTCGACAACAACGGCTAC
CGCCTGCAGGGCTATGCCGTCGGGCCGAACGGCCAGTTGCAGAACGGCGTGGTCACCGACCTCAAGGTCGAG
CGCGCCAACCAGGCGCCGCAGGCCACCTCGAGCATCCAGCAGTCGTACAACCTTAACTCGACGCTGAAGCCG
CCGACCGTGACGCCGTTCGATCCGTCCGACGCCGCCACCTACAACTCGTCCTCTTCGCTGGGCATCTATGAC
AGCCAGGGCAACTCCCACACCATGAGCCAGTTCTTCATCAAGAACGAGCCGGACCCGAATGCGACCCCGCCG
ATTCCGGAGAACAGCTGGACCATGAAAGTGCTGATCGACGGGGTCAATCCGCTCGACCCGTCGAACAAGACG
CCGATGAGCTTCAACGTCACCTTCGACGCCAGCGGCCAGATGACCTCGGTACGGGCTCCGGACGGCAGCACC
AGCGGGCCGGGCTTCAGCATCGACGCGACCACCAACGTGATCCAGTTCAGCCCGGCCACCGGCAATCCGCCG
ACTCCCGGCACCGGCTGGATTCCGGCGGCCTCGGACGGCAAGACCCCGCCGACCTACGCCTGGAATGGCGCG
ACCGGTGCCGCCAGCGGCATCTCCTTCGACATGCGCAAGACCACCCAGTACTCCACCGCGTTCGCCCAGAGC
AACCCGATCCAGGACGGTTACACCACCGGTCAGCTGGCAGGCCTGGAAATCGACGACACCGGGGTGATCTTC
GCCCGCTACACCAATGGCCAGTCCAAGGTGCAGGGCCAGGTGGTGCTGGCGAACTTCGCCAACATCCAGGGT
CTGACGCCGATCGGCAAGACCTCTTGGGTGCAGTCCGCGGAGTCCGGCGAGCCGGCGGTCGGCGCGCCGCGC
TCGGGCACCCTGGGGGCGCTGCAATCCGGCGCGCTGGAAGCGTCCAACGTGGACATCTCCAACGAACTGGTG
AACCTTATCGTCCACCAGCGCAACTACCAGGCCAACGCCAAGACCATCCAGACCGAGGATGCGGTGACCCAG
ACCATCATCAACCTGCGCTGA
Translation:
MSFNIGLSGIQAASSGLNVTGNNIANAGTVGFKQSRAEFADVYAASVLGSGSNPQGSGVLLSDVSQMFKQGN
IDSTNSVLDLAINGNGFFVTSNNGAISYTRAGYFNTDKQDFIVDNNGYRLQGYAVGPNGQLQNGVVTDLKVE
RANQAPQATSSIQQSYNLNSTLKPPTVTPFDPSDAATYNSSSSLGIYDSQGNSHTMSQFFIKNEPDPNATPP
IPENSWTMKVLIDGVNPLDPSNKTPMSFNVTFDASGQMTSVRAPDGSTSGPGFSIDATTNVIQFSPATGNPP
TPGTGWIPAASDGKTPPTYAWNGATGAASGISFDMRKTTQYSTAFAQSNPIQDGYTTGQLAGLEIDDTGVIF
ARYTNGQSKVQGQVVLANFANIQGLTPIGKTSWVQSAESGEPAVGAPRSGTLGALQSGALEASNVDISNELV
NLIVHQRNYQANAKTIQTEDAVTQTIINLR*
AnnotationID:996GeneID:987
AnnotatorUID: danlee
Modification Date/Time: 2004-05-20 16:04:28
Gene Name:flgE
Confidence Code:2
GeneProduct:flagellar hook protein FlgE
Cell Localization:()
Synonyms:PA1080
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1749
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly 
Homology:






 
Structural Features:
COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and secretion]
             CD-Length = 423 residues,  99.3% aligned
             Score =  324 bits (832), Expect = 1e-89







   
Genomic Context:
Cluster of flagellar biosynthetic genes from flgB through flgL






   
Comment:


















    ReferenceID:1977




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19119




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:987
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1766
                           PA1080_tr
                           translation of PA1080
                           462
                           99.78
                           99.99
                           0
                           2378.0
     

     
     
62109
                           gb|AAG04469.1|AE004539_11
                           (AE004539) flagellar hook protein FlgE [Pseudomonas aeruginosa PAO1]
                           462
                           99.78
                           99.99
                           0
                           2378.0
     

     
     
62110
                           gb|AAN69966.1|AE016635_2
                           (AE016790) flagellar hook protein FlgE [Pseudomonas putida KT2440]
                           464
                           48.06
                           65.08
                           26
                           1093.0
     

     
     
62111
                           gb|AAO55454.1|
                           (AE016862) flagellar hook protein FlgE [Pseudomonas syringae pv. tomato str. DC3000]
                           470
                           47.44
                           61.91
                           37
                           1025.0
     

     
     
62112
                           gb|AAM41238.1|
                           (AE012299) flagellar biosynthesis, hook protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           464
                           42.88
                           58.40
                           59
                           891.0
     

     






      

          
GC ORFID: 43989How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1080Glimmer Score: 

          
Start: 469863Stop: 471251

          
Length: 1389


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1080 translation of PA1080Homolog Bit Score 920.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7893 (ORF: BLASTX 397.0), t_PA1080 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTTTCAACATCGGCCTGAGCGGCATCCAGGCGGCCTCCAGCGGCCTGAACGTCACCGGCAACAACATC 
GCCAACGCCGGCACCGTAGGCTTCAAGCAATCCCGCGCGGAGTTCGCCGACGTCTACGCCGCCTCGGTGCTG 
GGTTCGGGCAGCAACCCGCAGGGCAGCGGCGTGCTGCTCTCGGACGTCTCGCAGATGTTCAAGCAGGGCAAC 
ATCGACTCGACCAACAGCGTGCTGGACCTGGCCATCAACGGCAACGGCTTCTTCGTCACCAGCAACAACGGG 
GCGATCAGCTACACCCGCGCCGGCTACTTCAATACCGACAAGCAGGATTTCATCGTCGACAACAACGGCTAC 
CGCCTGCAGGGCTATGCCGTCGGGCCGAACGGCCAGTTGCAGAACGGCGTGGTCACCGACCTCAAGGTCGAG 
CGCGCCAACCAGGCGCCGCAGGCCACCTCGAGCATCCAGCAGTCGTACAACCTTAACTCGACGCTGAAGCCG 
CCGACCGTGACGCCGTTCGATCCGTCCGACGCCGCCACCTACAACTCGTCCTCTTCGCTGGGCATCTATGAC 
AGCCAGGGCAACTCCCACACCATGAGCCAGTTCTTCATCAAGAACGAGCCGGACCCGAATGCGACCCCGCCG 
ATTCCGGAGAACAGCTGGACCATGAAAGTGCTGATCGACGGGGTCAATCCGCTCGACCCGTCGAACAAGACG 
CCGATGAGCTTCAACGTCACCTTCGACGCCAGCGGCCAGATGACCTCGGTACGGGCTCCGGACGGCAGCACC 
AGCGGGCCGGGCTTCAGCATCGACGCGACCACCAACGTGATCCAGTTCAGCCCGGCCACCGGCAATCCGCCG 
ACTCCCGGCACCGGCTGGATTCCGGCGGCCTCGGACGGCAAGACCCCGCCGACCTACGCCTGGAATGGCGCG 
ACCGGTGCCGCCAGCGGCATCTCCTTCGACATGCGCAAGACCACCCAGTACTCCACCGCGTTCGCCCAGAGC 
AACCCGATCCAGGACGGTTACACCACCGGTCAGCTGGCAGGCCTGGAAATCGACGACACCGGGGTGATCTTC 
GCCCGCTACACCAATGGCCAGTCCAAGGTGCAGGGCCAGGTGGTGCTGGCGAACTTCGCCAACATCCAGGGT 
CTGACGCCGATCGGCAAGACCTCTTGGGTGCAGTCCGCGGAGTCCGGCGAGCCGGCGGTCGGCGCGCCGCGC 
TCGGGCACCCTGGGGGCGCTGCAATCCGGCGCGCTGGAAGCGTCCAACGTGGACATCTCCAACGAACTGGTG 
AACCTTATCGTCCACCAGCGCAACTACCAGGCCAACGCCAAGACCATCCAGACCGAGGATGCGGTGACCCAG 
ACCATCATCAACCTGCGCTGA