ViewGene

Locus Name:
GeneID:
Location:

GeneID:985
TrivialName: PA14_19830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19830
PAO1 Ortholog Locus:PA3421
Sequence Length:1371
Protein Length:456
Start: 1708432
Stop: 1709802
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06809.1|AE004763_4 (AE004763) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 453/456 (99%), Positives = 454/456 (99%)
Sequence:
ATGAAAACAGCACGACTCCTGTCCTCCGGGGCGCTGGCCCTCAGCCTGCTGGCCGGTTCGGTGACGGCGGCG
GTTTCGCCCGACGAGGCCGCCAAGCTCGGCAGCAGCCTGACCCCCATCGGCGCGCAGAAGGAAGGCAACGCC
GACGGCAGCATCCCGGCCTGGACCGGCGGCCTTGCGGCCAGCGCCGGCAAGGTCGACGGCAAGGGTTTCCTT
TCCGATCCCTTTGCCGACGAGAAGCCGCTGTTCACCATCACCGCGCAGAACGTCGAGCAATACAAGGACAAG
CTCTCCGACGGCCAGTTGGCGATGTTCAAGCGCTACCCCGAGACCTACCGGATCCCGGTGTACAAGACCCAT
CGCACGGTGGCCCTGCCGGCCGAGATCGACGAGGCGGTCAGGCAGAGCGCGCTGAACGTGCAGCCGATCAAC
GACGGCAACGGCCTGTCGAATTTCGAGAAGAGCCGCTACTACGCCTTCCCGATCCCGAAGAACGGTGTCGAA
GTGCTCTGGAACCACATCACCCGCTACCGCGGCGGCAACCTCAAGCGCATCATCGTCCAGGCCACCCCGCAG
ACCAACGGCAGCTTCACGCCGATCCGCTTCGAGGAGTCGGTGGCGTTCCCGCAGAACATGCCTGACCTCGAC
CAGAGCAAGGCGGCCAACATCCTCACCTTCTTCAAGCAGCAGGTGACCGCGCCGGCGCGCCTGGCGGGCAAC
GTGCTGCTGGTCCACGAGACCCTCGACCAGGTCAAGGAGCCGCGCCTGGCCTGGGTCTACAACGCCGGCCAG
CGCCGCGTGCGGCGCGCCCCGCAGGTGGCCTACGATGGCCCGGGCACCGCCGCCGACGGCCTGCGCACCTCG
GATAACTTCGACATGTTCTCCGGCGCCCCGGACCGCTACGACTGGAAGCTGGTCGGCAAGCGCGAGATGTAC
ATCCCCTACAACGCCTACAAGCTCAACGACCCGACCCTGAAGTACGGCGACATCATCAAGGCCGGGCACATC
AACCAGGACCTGACCCGCTACGAGCTGCACCGGGTGTGGGAAGTGGTCGGCACGGTGAAGCCGGGTGAGCGG
CACATCTACGCCAAGCGCCACATGTACATCGACGAGGACAGCTGGCAGATCGCCCTGGTCGACCACTACGAC
GGTCGCGGCCAGCTCTGGCGGGTCGGCGAGGGCCACGCGCAGTACCACTACGACCAGAAGGTCGCCGGCTAC
ACCCTGGAGGCGCTCTACGACGTGATAGCCGGTCGCTACCTGGCGCTGGGCATGAACAACGAGGAGAAGCGC
GGCTACGAGTTCGGCTTCAAGGCCTCGTCCGCCGACTACACGCCGGCCGCCCTGCGCAACGCAGGGGTACGC
TGA
Translation:
MKTARLLSSGALALSLLAGSVTAAVSPDEAAKLGSSLTPIGAQKEGNADGSIPAWTGGLAASAGKVDGKGFL
SDPFADEKPLFTITAQNVEQYKDKLSDGQLAMFKRYPETYRIPVYKTHRTVALPAEIDEAVRQSALNVQPIN
DGNGLSNFEKSRYYAFPIPKNGVEVLWNHITRYRGGNLKRIIVQATPQTNGSFTPIRFEESVAFPQNMPDLD
QSKAANILTFFKQQVTAPARLAGNVLLVHETLDQVKEPRLAWVYNAGQRRVRRAPQVAYDGPGTAADGLRTS
DNFDMFSGAPDRYDWKLVGKREMYIPYNAYKLNDPTLKYGDIIKAGHINQDLTRYELHRVWEVVGTVKPGER
HIYAKRHMYIDEDSWQIALVDHYDGRGQLWRVGEGHAQYHYDQKVAGYTLEALYDVIAGRYLALGMNNEEKR
GYEFGFKASSADYTPAALRNAGVR*
AnnotationID:994GeneID:985
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 12:12:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3421
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:1973
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19115
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32145
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:985_cdd.html
URL:
Homologs By Global Alignment
Gene ID:985

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1759 PA3421_tr translation of PA3421 456 99.34 99.56 0 2380.0
61817 gb|AAG06809.1|AE004763_4 (AE004763) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 456 99.34 99.56 0 2380.0
1760 PA3922_tr translation of PA3922 457 68.70 84.68 3 1746.0
61819 gb|AAN66391.1|AE016266_13 (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440] 457 68.70 80.52 4 1685.0
61818 gb|AAG07309.1|AE004810_1 (AE004810) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 457 68.70 84.68 3 1746.0
GC ORFID: 43987How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3421Glimmer Score:
Start: 3245500Stop: 3244130
Length: 1371
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3421 translation of PA3421Homolog Bit Score 921.0
Other Homologs: t_PA3922 (ORF: BLASTX 675.0), psyr_15may02_Scaffold3_revised_gene4328 (ORF: BLASTX 615.0), t_PA3081 (ORF: BLASTX 441.0), psyr_15may02_Scaffold1_revised_gene732 (ORF: BLASTX 391.0), t_PA0383 (ORF: BLASTX 361.0), t_PA3421 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAACAGCACGACTCCTGTCCTCCGGGGCGCTGGCCCTCAGCCTGCTGGCCGGTTCGGTGACGGCGGCG
GTTTCGCCCGACGAGGCCGCCAAGCTCGGCAGCAGCCTGACCCCCATCGGCGCGCAGAAGGAAGGCAACGCC
GACGGCAGCATCCCGGCCTGGACCGGCGGCCTTGCGGCCAGCGCCGGCAAGGTCGACGGCAAGGGTTTCCTT
TCCGATCCCTTTGCCGACGAGAAGCCGCTGTTCACCATCACCGCGCAGAACGTCGAGCAATACAAGGACAAG
CTCTCCGACGGCCAGTTGGCGATGTTCAAGCGCTACCCCGAGACCTACCGGATCCCGGTGTACAAGACCCAT
CGCACGGTGGCCCTGCCGGCCGAGATCGACGAGGCGGTCAGGCAGAGCGCGCTGAACGTGCAGCCGATCAAC
GACGGCAACGGCCTGTCGAATTTCGAGAAGAGCCGCTACTACGCCTTCCCGATCCCGAAGAACGGTGTCGAA
GTGCTCTGGAACCACATCACCCGCTACCGCGGCGGCAACCTCAAGCGCATCATCGTCCAGGCCACCCCGCAG
ACCAACGGCAGCTTCACGCCGATCCGCTTCGAGGAGTCGGTGGCGTTCCCGCAGAACATGCCTGACCTCGAC
CAGAGCAAGGCGGCCAACATCCTCACCTTCTTCAAGCAGCAGGTGACCGCGCCGGCGCGCCTGGCGGGCAAC
GTGCTGCTGGTCCACGAGACCCTCGACCAGGTCAAGGAGCCGCGCCTGGCCTGGGTCTACAACGCCGGCCAG
CGCCGCGTGCGGCGCGCCCCGCAGGTGGCCTACGATGGCCCGGGCACCGCCGCCGACGGCCTGCGCACCTCG
GATAACTTCGACATGTTCTCCGGCGCCCCGGACCGCTACGACTGGAAGCTGGTCGGCAAGCGCGAGATGTAC
ATCCCCTACAACGCCTACAAGCTCAACGACCCGACCCTGAAGTACGGCGACATCATCAAGGCCGGGCACATC
AACCAGGACCTGACCCGCTACGAGCTGCACCGGGTGTGGGAAGTGGTCGGCACGGTGAAGCCGGGTGAGCGG
CACATCTACGCCAAGCGCCACATGTACATCGACGAGGACAGCTGGCAGATCGCCCTGGTCGACCACTACGAC
GGTCGCGGCCAGCTCTGGCGGGTCGGCGAGGGCCACGCGCAGTACCACTACGACCAGAAGGTCGCCGGCTAC
ACCCTGGAGGCGCTCTACGACGTGATAGCCGGTCGCTACCTGGCGCTGGGCATGAACAACGAGGAGAAGCGC
GGCTACGAGTTCGGCTTCAAGGCCTCGTCCGCCGACTACACGCCGGCCGCCCTGCGCAACGCAGGGGTACGC
TGA