ViewGene
Locus Name:
GeneID:
Location:

GeneID:983
TrivialName: PA14_27050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27050
PAO1 Ortholog Locus:PA2865
Sequence Length:1431
Protein Length:476
Start: 2350962
Stop: 2352392
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06253.1|AE004713_2 (AE004713) probable glycosylase [Pseudomonas aeruginosa PAO1]
Identities = 474/476 (99%), Positives = 476/476 (100%)
Sequence:
ATGACGCGTCTGTTGCTGCTTTCGCTTTGCCTGCTGGTGCTCGCACCCTTGCCGGCGGCTGCGCGCATCACC
GGCCAGCCGGACAACTGGCACAAGGAACAGCCGGAGACCCGCGACCTGGCGAGCATCCGCCGCGCTGGCGTG
CTCAAGGTGCTGGTCAACCAGAGCCGCAACAGCTCGGGCGAGGTGAAGGGCGAGCCAATCGGCGTCGAGTAC
CGTCGCCTGCGCGCCTTCGAGCAATACCTCAACAGCCGCTCGCCGTCCGCGCGGAACCTCACCCTCAAGCTC
ATACCCAAGCCCAAGGACCAGTTGCTTGCCGCCCTGCAGCGTGGCGAAGGCGACCTGGTCGCCCCCGGCGAA
CTGCTGCCGGCGCACGACGGCCTGCAGGTCAGCCCGAGCGCGCCGGTGCGCGCCGATGTGCCGCTGGTGCTG
GTGGCGCGCAAGGGCAACCGGCGCTACACGCGCCTGGAGCAGTTGTCCGGGCGGACCATCCCGCTGCCGGCC
GGCAGCGCCGCCGAGGGCGCCATCGAACTGGTCAACCAGCGCCTGGCGCAACGCCGCATGGCACCGATCCGG
ATCGAAAAGCTGGACGCTTCCCTGGCCGTCGAGGATGTGATGGAAATGGTCCAGGCAGGCATCCTCGGCTTC
ACCGTGGTCGAGCAGCCCATCGCCGAACGCTGGGCCAAGGTGCTGCCGAAGCTGCGCGTCGACCGCCACCTG
GTGCTGGACAATCGCGCCGACATGGCCTGGTACGTGCGCCGCGATGCCAGCACCCTGCGCGCGACCATCGAC
CGCTTCCTCGCCGACTACCGCGCGCCGGCCGACCAGGACGTGGCTTTCCAGCGCGTCTACCGGCGCGCCTAC
AAGGTCCGCAACCCCCTCGGCGCGGCGGACCGCAAGCGCCTGGAAGCGGTCCGTCCACTGCTGCAGCGCTAC
GCGCAGCAGAGCAGCATGGACTGGCTGGCGCTGGCGGCGGTGGCCTACAAGGAGTCGCACCTGAACCCGAAG
GCGCGCGGTTCCGGCGGCGCCAGCGGGCTGATGCAGATCACCCCGGCGGCGGCGCGCAGCGTCGGGGTCGGC
AATGTGCACGACAAGGACAGCAACGTGCTGGCCGCCAGTCGCTACCTGACCAAGATCCGCAAGCAGTTCTTC
TCCAGCAAGCACCTCGACGAACGCGAGCGCCTGGCGTTCACCCTGGCGGCCTACAACATGGGCCCGGAGCGG
GTGCAGAACCTGCGCACCCAGGCGCGTCGCCGGGGGCTCGATCCGAATCGCTGGTTCTTCCAGGTAGAGCGG
GTGGCTGCGGAAGAGATAGGCATGGGTGTGGTGAGTTATGTCAGCAGCGTCAACAAGTACTACCTTGCATAT
GAACGCGAACGGGTTCGCCTGGAGCCCGGGGTACGTGCGAAGACGGCGACGGCTCAAAAATAA
Translation:
MTRLLLLSLCLLVLAPLPAAARITGQPDNWHKEQPETRDLASIRRAGVLKVLVNQSRNSSGEVKGEPIGVEY
RRLRAFEQYLNSRSPSARNLTLKLIPKPKDQLLAALQRGEGDLVAPGELLPAHDGLQVSPSAPVRADVPLVL
VARKGNRRYTRLEQLSGRTIPLPAGSAAEGAIELVNQRLAQRRMAPIRIEKLDASLAVEDVMEMVQAGILGF
TVVEQPIAERWAKVLPKLRVDRHLVLDNRADMAWYVRRDASTLRATIDRFLADYRAPADQDVAFQRVYRRAY
KVRNPLGAADRKRLEAVRPLLQRYAQQSSMDWLALAAVAYKESHLNPKARGSGGASGLMQITPAAARSVGVG
NVHDKDSNVLAASRYLTKIRKQFFSSKHLDERERLAFTLAAYNMGPERVQNLRTQARRRGLDPNRWFFQVER
VAAEEIGMGVVSYVSSVNKYYLAYERERVRLEPGVRAKTATAQK*
AnnotationID:992GeneID:983
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 06:06:54
Gene Name:
Confidence Code:3
GeneProduct:putative transglycosylase, SLT family
Cell Localization:()
Synonyms:PA2865
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4623
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55771.1| (AE016863) transglycosylase, SLT family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 473

 Score =  527 bits (1358), Expect = e-149
 Identities = 267/465 (57%), Positives = 352/465 (75%), Gaps = 3/465 (0%)

>gb|AAN67925.1|AE016425_2 (AE016782) lytic transglycosylase family protein [Pseudomonas
           putida KT2440]
          Length = 468

 Score =  512 bits (1318), Expect = e-144
 Identities = 268/465 (57%), Positives = 342/465 (73%), Gaps = 3/465 (0%)






 
Structural Features:
COG4623, Predicted soluble lytic transglycosylase fused to an ABC-type 
amino acid-binding protein 
[Cell envelope biogenesis, outer membrane]








   
Genomic Context:






   
Comment:


















    ReferenceID:1969




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19111




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36200




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:983_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:983
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1757
                           PA2865_tr
                           translation of PA2865
                           476
                           99.57
                           99.99
                           0
                           2383.0
     

     
     
61781
                           gb|AAG06253.1|AE004713_2
                           (AE004713) probable glycosylase [Pseudomonas aeruginosa PAO1]
                           476
                           99.57
                           99.99
                           0
                           2383.0
     

     
     
61782
                           gb|AAO55771.1|
                           (AE016863) transglycosylase, SLT family [Pseudomonas syringae pv. tomato str. DC3000]
                           478
                           56.27
                           74.47
                           7
                           1359.0
     

     
     
61783
                           gb|AAN67925.1|AE016425_2
                           (AE016782) lytic transglycosylase family protein [Pseudomonas putida KT2440]
                           477
                           56.18
                           71.90
                           10
                           1318.0
     

     
     
61784
                           gb|AAM14704.1|
                           (AY091666) unknown [Pseudomonas mendocina]
                           605
                           22.80
                           29.75
                           330
                           539.0
     

     






      

          
GC ORFID: 43985How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2865Glimmer Score: 

          
Start: 2602964Stop: 2601534

          
Length: 1431


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2865 translation of PA2865Homolog Bit Score 922.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1045 (ORF: BLASTX 523.0), t_PA2865 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCGTCTGTTGCTGCTTTCGCTTTGCCTGCTGGTGCTCGCACCCTTGCCGGCGGCTGCGCGCATCACC 
GGCCAGCCGGACAACTGGCACAAGGAACAGCCGGAGACCCGCGACCTGGCGAGCATCCGCCGCGCTGGCGTG 
CTCAAGGTGCTGGTCAACCAGAGCCGCAACAGCTCGGGCGAGGTGAAGGGCGAGCCAATCGGCGTCGAGTAC 
CGTCGCCTGCGCGCCTTCGAGCAATACCTCAACAGCCGCTCGCCGTCCGCGCGGAACCTCACCCTCAAGCTC 
ATACCCAAGCCCAAGGACCAGTTGCTTGCCGCCCTGCAGCGTGGCGAAGGCGACCTGGTCGCCCCCGGCGAA 
CTGCTGCCGGCGCACGACGGCCTGCAGGTCAGCCCGAGCGCGCCGGTGCGCGCCGATGTGCCGCTGGTGCTG 
GTGGCGCGCAAGGGCAACCGGCGCTACACGCGCCTGGAGCAGTTGTCCGGGCGGACCATCCCGCTGCCGGCC 
GGCAGCGCCGCCGAGGGCGCCATCGAACTGGTCAACCAGCGCCTGGCGCAACGCCGCATGGCACCGATCCGG 
ATCGAAAAGCTGGACGCTTCCCTGGCCGTCGAGGATGTGATGGAAATGGTCCAGGCAGGCATCCTCGGCTTC 
ACCGTGGTCGAGCAGCCCATCGCCGAACGCTGGGCCAAGGTGCTGCCGAAGCTGCGCGTCGACCGCCACCTG 
GTGCTGGACAATCGCGCCGACATGGCCTGGTACGTGCGCCGCGATGCCAGCACCCTGCGCGCGACCATCGAC 
CGCTTCCTCGCCGACTACCGCGCGCCGGCCGACCAGGACGTGGCTTTCCAGCGCGTCTACCGGCGCGCCTAC 
AAGGTCCGCAACCCCCTCGGCGCGGCGGACCGCAAGCGCCTGGAAGCGGTCCGTCCACTGCTGCAGCGCTAC 
GCGCAGCAGAGCAGCATGGACTGGCTGGCGCTGGCGGCGGTGGCCTACAAGGAGTCGCACCTGAACCCGAAG 
GCGCGCGGTTCCGGCGGCGCCAGCGGGCTGATGCAGATCACCCCGGCGGCGGCGCGCAGCGTCGGGGTCGGC 
AATGTGCACGACAAGGACAGCAACGTGCTGGCCGCCAGTCGCTACCTGACCAAGATCCGCAAGCAGTTCTTC 
TCCAGCAAGCACCTCGACGAACGCGAGCGCCTGGCGTTCACCCTGGCGGCCTACAACATGGGCCCGGAGCGG 
GTGCAGAACCTGCGCACCCAGGCGCGTCGCCGGGGGCTCGATCCGAATCGCTGGTTCTTCCAGGTAGAGCGG 
GTGGCTGCGGAAGAGATAGGCATGGGTGTGGTGAGTTATGTCAGCAGCGTCAACAAGTACTACCTTGCATAT 
GAACGCGAACGGGTTCGCCTGGAGCCCGGGGTACGTGCGAAGACGGCGACGGCTCAAAAATAA