ViewGene

Locus Name:
GeneID:
Location:

GeneID:981
TrivialName: PA14_02020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02020
PAO1 Ortholog Locus:PA0162
Sequence Length:1335
Protein Length:444
Start: 183454
Stop: 184788
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03552.1|AE004454_4 (AE004454) probable porin [Pseudomonas aeruginosa PAO1]
Identities = 442/444 (99%), Positives = 444/444 (100%)
Sequence:
ATGAGGAATCTGTTCGCCTTGACGCCGATGGCGCTGGCGCTGTGCACCGCGTCCGCCGCCTGGGCCGATGAG
GGGGAAGCCAAAGAAGGCTTCATCGAAGGCTCCAGCCTCCAATTGCTGACCCGCAACTACTACTTCAACCAT
GACCGCCGGCACGCTTCCGGGCACGACAGCAAGGAATGGGCACAAGGCTTCATCGCCACCTTTCAGTCCGGC
TACACGCCCGGCGTGGTCGGCTTCGGCGTCGACGCCTACGGCATGCTCGGGCTGAAGCTCGACGGCGGCGGC
GGTACCGGCGGCACCAGCATCCTGCCGATCACCGCGCCGAGCAAGGAAGGCTACGAATCCGGCAAGGCGCCC
GATGAGTTCTCCAGTGGCGGGGCGGCGCTGAAGATCCGCGCCTTCGACACCGAGCTGAAGCTGGGCGACCAG
TTCCTCAGCAACCCGGTGGTCGCCGGCGGCGAGTCGCGCATGCTGCCGCAGACCTTCCGCGGCGTGAGCCTG
ACCAACAACAGTTTCGAGGACCTGACCCTCACGGCTGGCCAGGTCAGTTTCACCAAGTACTACAACCAGAGC
GGCCACCGTCGCCTCGGCTCGTACTACGGCGAACTGCCGGGCGACCGCGACAGCCATCATCTCAGCTGGCTG
GGCGGCACCTGGGGCGGTATCGAGGGCTTCACCAGCAGCCTGTACGCCGCCGAACTGCAGAACGTCTGGAAG
CAGTACTACGCCGACGTCGACTACACCTACGAGATCGACGACAACTGGTCGCTGAACCCCGGCGCGCACTAC
TACAAGACCGTCGACAGCGGCGACTCGCTGCTCGGCCGGATCGACAACAACACCTACAGCCTGCATTTCGCG
GTCGGCTACAAGCAACACACCGTCACCGCGGTGCTGCAGAAGGTCAACGGCAACACGCCGTTCGACTACATC
AACCAGGGCGACAGCATCTTCCTCGACAACTCGCAGCAGTATTCCGACTTCAACGGTCCCAACGAGAAGTCC
TGGAAGCTGCAATACGACTACGACTTCGTCGCCCTCGGCCTGCCCGGCCTGAGCGCCTCGGCCTCGTACTCG
CGCGGCAAGCTGGACCTGACCCGGGTCGATCCGGACAGCCCCGGCTACGGCGGCTGGTACAGCGCCGACGGC
AAGAACGCCAAGCACTGGGAACGCGACCTCGACCTGCAGTACGTGGTCCAGGGCGGTCCGGCCAAGGACCTC
TCGCTGCGCCTGCGCTGGGCCACCCACCGCGGCACCGGCGGCTACAGCGCGGTGGACAACGACATCGACGAA
TACCGGGTGATCGTCGACTACCCCATCGACGTGTTCTGA
Translation:
MRNLFALTPMALALCTASAAWADEGEAKEGFIEGSSLQLLTRNYYFNHDRRHASGHDSKEWAQGFIATFQSG
YTPGVVGFGVDAYGMLGLKLDGGGGTGGTSILPITAPSKEGYESGKAPDEFSSGGAALKIRAFDTELKLGDQ
FLSNPVVAGGESRMLPQTFRGVSLTNNSFEDLTLTAGQVSFTKYYNQSGHRRLGSYYGELPGDRDSHHLSWL
GGTWGGIEGFTSSLYAAELQNVWKQYYADVDYTYEIDDNWSLNPGAHYYKTVDSGDSLLGRIDNNTYSLHFA
VGYKQHTVTAVLQKVNGNTPFDYINQGDSIFLDNSQQYSDFNGPNEKSWKLQYDYDFVALGLPGLSASASYS
RGKLDLTRVDPDSPGYGGWYSADGKNAKHWERDLDLQYVVQGGPAKDLSLRLRWATHRGTGGYSAVDNDIDE
YRVIVDYPIDVF*
AnnotationID:990GeneID:981
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 07:07:12
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane porin
Cell Localization:()
Synonyms:PA0162
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03573
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66424.1|AE016270_1 (AE016777) porin, putative [Pseudomonas putida KT2440]
          Length = 444

 Score =  555 bits (1431), Expect = e-157
 Identities = 275/448 (61%), Positives = 336/448 (75%), Gaps = 8/448 (1%)

Structural Features:
pfam03573, OprD, outer membrane porin, OprD family.
CD-Length = 449 residues,  97.1% aligned
Score =  257 bits (658), Expect = 2e-69
Identities = 148/439 (33%), Positives = 214/439 (48%), Gaps = 35/439 (7%)
Genomic Context:
Comment:
ReferenceID:1965
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19107
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33534
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:981_cdd.html
URL:
Homologs By Global Alignment
Gene ID:981

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1752 PA0162_tr translation of PA0162 444 99.54 99.99 0 2382.0
61760 gb|AAG03552.1|AE004454_4 (AE004454) probable porin [Pseudomonas aeruginosa PAO1] 444 99.54 99.99 0 2382.0
61761 gb|AAN66424.1|AE016270_1 (AE016777) porin, putative [Pseudomonas putida KT2440] 449 61.69 75.50 10 1445.0
1753 PA2420_tr translation of PA2420 482 44.60 59.12 48 1055.0
61762 gb|AAG05808.1|AE004669_5 (AE004669) probable porin [Pseudomonas aeruginosa PAO1] 482 44.60 59.12 48 1055.0
GC ORFID: 43983How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0162Glimmer Score:
Start: 5984793Stop: 5986127
Length: 1335
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0162 translation of PA0162Homolog Bit Score 922.0
Other Homologs: t_PA0958 (ORF: BLASTX 325.0), psyr_15may02_Scaffold6_revised_gene6555 (ORF: BLASTX 322.0), t_PA2505 (ORF: BLASTX 320.0), psyr_15may02_Scaffold3_revised_gene4762 (ORF: BLASTX 300.0), t_PA0162 (ORF: GLIMMER)
GC ORF Sequence
ATGAGGAATCTGTTCGCCTTGACGCCGATGGCGCTGGCGCTGTGCACCGCGTCCGCCGCCTGGGCCGATGAG
GGGGAAGCCAAAGAAGGCTTCATCGAAGGCTCCAGCCTCCAATTGCTGACCCGCAACTACTACTTCAACCAT
GACCGCCGGCACGCTTCCGGGCACGACAGCAAGGAATGGGCACAAGGCTTCATCGCCACCTTTCAGTCCGGC
TACACGCCCGGCGTGGTCGGCTTCGGCGTCGACGCCTACGGCATGCTCGGGCTGAAGCTCGACGGCGGCGGC
GGTACCGGCGGCACCAGCATCCTGCCGATCACCGCGCCGAGCAAGGAAGGCTACGAATCCGGCAAGGCGCCC
GATGAGTTCTCCAGTGGCGGGGCGGCGCTGAAGATCCGCGCCTTCGACACCGAGCTGAAGCTGGGCGACCAG
TTCCTCAGCAACCCGGTGGTCGCCGGCGGCGAGTCGCGCATGCTGCCGCAGACCTTCCGCGGCGTGAGCCTG
ACCAACAACAGTTTCGAGGACCTGACCCTCACGGCTGGCCAGGTCAGTTTCACCAAGTACTACAACCAGAGC
GGCCACCGTCGCCTCGGCTCGTACTACGGCGAACTGCCGGGCGACCGCGACAGCCATCATCTCAGCTGGCTG
GGCGGCACCTGGGGCGGTATCGAGGGCTTCACCAGCAGCCTGTACGCCGCCGAACTGCAGAACGTCTGGAAG
CAGTACTACGCCGACGTCGACTACACCTACGAGATCGACGACAACTGGTCGCTGAACCCCGGCGCGCACTAC
TACAAGACCGTCGACAGCGGCGACTCGCTGCTCGGCCGGATCGACAACAACACCTACAGCCTGCATTTCGCG
GTCGGCTACAAGCAACACACCGTCACCGCGGTGCTGCAGAAGGTCAACGGCAACACGCCGTTCGACTACATC
AACCAGGGCGACAGCATCTTCCTCGACAACTCGCAGCAGTATTCCGACTTCAACGGTCCCAACGAGAAGTCC
TGGAAGCTGCAATACGACTACGACTTCGTCGCCCTCGGCCTGCCCGGCCTGAGCGCCTCGGCCTCGTACTCG
CGCGGCAAGCTGGACCTGACCCGGGTCGATCCGGACAGCCCCGGCTACGGCGGCTGGTACAGCGCCGACGGC
AAGAACGCCAAGCACTGGGAACGCGACCTCGACCTGCAGTACGTGGTCCAGGGCGGTCCGGCCAAGGACCTC
TCGCTGCGCCTGCGCTGGGCCACCCACCGCGGCACCGGCGGCTACAGCGCGGTGGACAACGACATCGACGAA
TACCGGGTGATCGTCGACTACCCCATCGACGTGTTCTGA