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ViewGene |
Locus Name:
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GeneID: |
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Location: |
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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG03552.1|AE004454_4 (AE004454) probable porin [Pseudomonas aeruginosa PAO1]
Identities = 442/444 (99%), Positives = 444/444 (100%)
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Sequence:
ATGAGGAATCTGTTCGCCTTGACGCCGATGGCGCTGGCGCTGTGCACCGCGTCCGCCGCCTGGGCCGATGAG
GGGGAAGCCAAAGAAGGCTTCATCGAAGGCTCCAGCCTCCAATTGCTGACCCGCAACTACTACTTCAACCAT
GACCGCCGGCACGCTTCCGGGCACGACAGCAAGGAATGGGCACAAGGCTTCATCGCCACCTTTCAGTCCGGC
TACACGCCCGGCGTGGTCGGCTTCGGCGTCGACGCCTACGGCATGCTCGGGCTGAAGCTCGACGGCGGCGGC
GGTACCGGCGGCACCAGCATCCTGCCGATCACCGCGCCGAGCAAGGAAGGCTACGAATCCGGCAAGGCGCCC
GATGAGTTCTCCAGTGGCGGGGCGGCGCTGAAGATCCGCGCCTTCGACACCGAGCTGAAGCTGGGCGACCAG
TTCCTCAGCAACCCGGTGGTCGCCGGCGGCGAGTCGCGCATGCTGCCGCAGACCTTCCGCGGCGTGAGCCTG
ACCAACAACAGTTTCGAGGACCTGACCCTCACGGCTGGCCAGGTCAGTTTCACCAAGTACTACAACCAGAGC
GGCCACCGTCGCCTCGGCTCGTACTACGGCGAACTGCCGGGCGACCGCGACAGCCATCATCTCAGCTGGCTG
GGCGGCACCTGGGGCGGTATCGAGGGCTTCACCAGCAGCCTGTACGCCGCCGAACTGCAGAACGTCTGGAAG
CAGTACTACGCCGACGTCGACTACACCTACGAGATCGACGACAACTGGTCGCTGAACCCCGGCGCGCACTAC
TACAAGACCGTCGACAGCGGCGACTCGCTGCTCGGCCGGATCGACAACAACACCTACAGCCTGCATTTCGCG
GTCGGCTACAAGCAACACACCGTCACCGCGGTGCTGCAGAAGGTCAACGGCAACACGCCGTTCGACTACATC
AACCAGGGCGACAGCATCTTCCTCGACAACTCGCAGCAGTATTCCGACTTCAACGGTCCCAACGAGAAGTCC
TGGAAGCTGCAATACGACTACGACTTCGTCGCCCTCGGCCTGCCCGGCCTGAGCGCCTCGGCCTCGTACTCG
CGCGGCAAGCTGGACCTGACCCGGGTCGATCCGGACAGCCCCGGCTACGGCGGCTGGTACAGCGCCGACGGC
AAGAACGCCAAGCACTGGGAACGCGACCTCGACCTGCAGTACGTGGTCCAGGGCGGTCCGGCCAAGGACCTC
TCGCTGCGCCTGCGCTGGGCCACCCACCGCGGCACCGGCGGCTACAGCGCGGTGGACAACGACATCGACGAA
TACCGGGTGATCGTCGACTACCCCATCGACGTGTTCTGA |
Translation:
MRNLFALTPMALALCTASAAWADEGEAKEGFIEGSSLQLLTRNYYFNHDRRHASGHDSKEWAQGFIATFQSG
YTPGVVGFGVDAYGMLGLKLDGGGGTGGTSILPITAPSKEGYESGKAPDEFSSGGAALKIRAFDTELKLGDQ
FLSNPVVAGGESRMLPQTFRGVSLTNNSFEDLTLTAGQVSFTKYYNQSGHRRLGSYYGELPGDRDSHHLSWL
GGTWGGIEGFTSSLYAAELQNVWKQYYADVDYTYEIDDNWSLNPGAHYYKTVDSGDSLLGRIDNNTYSLHFA
VGYKQHTVTAVLQKVNGNTPFDYINQGDSIFLDNSQQYSDFNGPNEKSWKLQYDYDFVALGLPGLSASASYS
RGKLDLTRVDPDSPGYGGWYSADGKNAKHWERDLDLQYVVQGGPAKDLSLRLRWATHRGTGGYSAVDNDIDE
YRVIVDYPIDVF* |
AnnotationID:990 | GeneID:981 |
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Modification Date/Time: |
2005-03-23 07:07:12 |
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GeneProduct: | putative outer membrane porin |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (15) Membrane proteins |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | transport of small molecules |
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Homology: | >gb|AAN66424.1|AE016270_1 (AE016777) porin, putative [Pseudomonas putida KT2440]
Length = 444
Score = 555 bits (1431), Expect = e-157
Identities = 275/448 (61%), Positives = 336/448 (75%), Gaps = 8/448 (1%)
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Structural Features: | pfam03573, OprD, outer membrane porin, OprD family.
CD-Length = 449 residues, 97.1% aligned
Score = 257 bits (658), Expect = 2e-69
Identities = 148/439 (33%), Positives = 214/439 (48%), Gaps = 35/439 (7%) |
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Homologs By Global Alignment |
Gene ID:981 |
Identity: |
0% |
10% |
20% |
30% |
40% |
50% |
60% |
70% |
80% |
90% |
100% |
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HomologID |
Accession |
Description |
Length |
PctIdentity |
PctSimilarity |
Gaps |
Score |
1752 |
PA0162_tr |
translation of PA0162 |
444 |
99.54 |
99.99 |
0 |
2382.0 |
61760 |
gb|AAG03552.1|AE004454_4 |
(AE004454) probable porin [Pseudomonas aeruginosa PAO1] |
444 |
99.54 |
99.99 |
0 |
2382.0 |
61761 |
gb|AAN66424.1|AE016270_1 |
(AE016777) porin, putative [Pseudomonas putida KT2440] |
449 |
61.69 |
75.50 |
10 |
1445.0 |
1753 |
PA2420_tr |
translation of PA2420 |
482 |
44.60 |
59.12 |
48 |
1055.0 |
61762 |
gb|AAG05808.1|AE004669_5 |
(AE004669) probable porin [Pseudomonas aeruginosa PAO1] |
482 |
44.60 |
59.12 |
48 |
1055.0 |
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GC ORFID: 43983 | How Found: BLASTX |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: t_PA0162 | Glimmer Score: |
Start: 5984793 | Stop: 5986127 |
Length: 1335 | |
Start Codon: ATG | Truncated Start: |
Stop Codon: TGA | Truncated Stop: |
Homolog: t_PA0162 translation of PA0162 | Homolog Bit Score 922.0 |
Other Homologs: t_PA0958 (ORF: BLASTX 325.0), psyr_15may02_Scaffold6_revised_gene6555 (ORF: BLASTX 322.0), t_PA2505 (ORF: BLASTX 320.0), psyr_15may02_Scaffold3_revised_gene4762 (ORF: BLASTX 300.0), t_PA0162 (ORF: GLIMMER) |
GC ORF Sequence |
ATGAGGAATCTGTTCGCCTTGACGCCGATGGCGCTGGCGCTGTGCACCGCGTCCGCCGCCTGGGCCGATGAG GGGGAAGCCAAAGAAGGCTTCATCGAAGGCTCCAGCCTCCAATTGCTGACCCGCAACTACTACTTCAACCAT GACCGCCGGCACGCTTCCGGGCACGACAGCAAGGAATGGGCACAAGGCTTCATCGCCACCTTTCAGTCCGGC TACACGCCCGGCGTGGTCGGCTTCGGCGTCGACGCCTACGGCATGCTCGGGCTGAAGCTCGACGGCGGCGGC GGTACCGGCGGCACCAGCATCCTGCCGATCACCGCGCCGAGCAAGGAAGGCTACGAATCCGGCAAGGCGCCC GATGAGTTCTCCAGTGGCGGGGCGGCGCTGAAGATCCGCGCCTTCGACACCGAGCTGAAGCTGGGCGACCAG TTCCTCAGCAACCCGGTGGTCGCCGGCGGCGAGTCGCGCATGCTGCCGCAGACCTTCCGCGGCGTGAGCCTG ACCAACAACAGTTTCGAGGACCTGACCCTCACGGCTGGCCAGGTCAGTTTCACCAAGTACTACAACCAGAGC GGCCACCGTCGCCTCGGCTCGTACTACGGCGAACTGCCGGGCGACCGCGACAGCCATCATCTCAGCTGGCTG GGCGGCACCTGGGGCGGTATCGAGGGCTTCACCAGCAGCCTGTACGCCGCCGAACTGCAGAACGTCTGGAAG CAGTACTACGCCGACGTCGACTACACCTACGAGATCGACGACAACTGGTCGCTGAACCCCGGCGCGCACTAC TACAAGACCGTCGACAGCGGCGACTCGCTGCTCGGCCGGATCGACAACAACACCTACAGCCTGCATTTCGCG GTCGGCTACAAGCAACACACCGTCACCGCGGTGCTGCAGAAGGTCAACGGCAACACGCCGTTCGACTACATC AACCAGGGCGACAGCATCTTCCTCGACAACTCGCAGCAGTATTCCGACTTCAACGGTCCCAACGAGAAGTCC TGGAAGCTGCAATACGACTACGACTTCGTCGCCCTCGGCCTGCCCGGCCTGAGCGCCTCGGCCTCGTACTCG CGCGGCAAGCTGGACCTGACCCGGGTCGATCCGGACAGCCCCGGCTACGGCGGCTGGTACAGCGCCGACGGC AAGAACGCCAAGCACTGGGAACGCGACCTCGACCTGCAGTACGTGGTCCAGGGCGGTCCGGCCAAGGACCTC TCGCTGCGCCTGCGCTGGGCCACCCACCGCGGCACCGGCGGCTACAGCGCGGTGGACAACGACATCGACGAA TACCGGGTGATCGTCGACTACCCCATCGACGTGTTCTGA |
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