ViewGene
Locus Name:
GeneID:
Location:

GeneID:980
TrivialName: PA14_09900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09900
PAO1 Ortholog Locus:PA4175
Sequence Length:1389
Protein Length:462
Start: 851380
Stop: 849992
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAL47683.1| (AY062882) protease IV [Pseudomonas aeruginosa]
Identities = 461/462 (99%), Positives = 462/462 (100%)
Sequence:
ATGCATAAGAGAACGTACCTGAATGCATGCCTGGTTCTCGCGCTGGCTGCGGGCGCGAGCCAGGCCTCGGCC
GCGCCCGGTGCGAGCGAAATGGCTGGCGACGTCGCCGTGCTCCAGGCTTCTCCGGCGAGCACCGGCCACGCC
CGCTTCGCCAACCCCAACGCGGCGACCTCGGCGGCCGGCATTCACTTCGCCGCGCCCCCCGCCCGCCGCGTG
GCCCGCGCCGCGCCGCTGGCGCCGAAACCGGGTACGCCGCTGCAAGTAGGCGTGGGCCTGAAGACGGCGACT
CCGGAAATCGACCTGGCAACCCTCGAATGGATCGACACCCCGGACGGGCGCCACACCGCGCGCTTCCCGATC
AGCGCCGCGGGGGCCGCCAGCCTACGCGCCGCGATTCGCCTGGAAACCCGCAGCGGCTCGCTGCCCGACGAC
GTGCTGCTGCACTTCGCCGGCGCCGGCAAGGAAATCTTCGAGGCCAGCGGCAAGGACCTCTCGCTCAACCGT
CCCTACTGGAGCCCGGTCATCGAGGGCGATACCCTGACCGTCGAACTGGTGCTGCCGGCCAACCTGCAACCG
GGCGACCTGCGCCTGTCGGTACCCCAGGTATCGTATTTCGCCGACTCCCTGTACAAGGCCGGCTACCGCGAC
GGCTTCGGCGCCAGCGGCAGCTGCGAGGTGGATGCGGTCTGCGCGACCCAGAGCGGCACGCGGGCCTACGAC
AACGCCACCGCCGCGGTGGCGAAGATGGTCTTCACCAGCTCGGCGGACGGCGGCAGCTACATCTGCACCGGC
ACCCTGCTGAACAACGGCAACTCGCCCAAGCGCCAGCTGTTCTGGTCGGCCGCGCACTGCATCGAGGACCAG
GCCACCGCCGCGACGCTGCAGACCATCTGGTTCTACAACACCACCCAGTGCTACGGCGACGCCTCGACCATC
AACCAGAGCGTCACCGTGCTGACCGGCGGGGCGAATATCCTGCACCGCGACGCGAAGCGCGACACCCTGCTG
CTGGAACTCAAGCGTACTCCGCCGGCCGGCGTGTTCTACCAGGGCTGGAGCGCCACGCCGATCGCCAACGGC
TCGCTCGGCCATGACATCCACCATCCGCGCGGCGACGCCAAGAAATACTCGCAGGGCAACGTCTCGGCAGTG
GGCGTCACCTACGACGGGCATACCGCCCTGACCCGCGTCGACTGGCCGTCGGCGGTGGTCGAAGGCGGCTCG
TCCGGCTCGGGCCTGCTGACCGTCGCCGGCGACGGTTCCTACCAGCTACGCGGTGGCCTGTACGGCGGCCCC
TCGTACTGCGGCGCGCCCACCTCACAGCGCAATGACTACTTCTCCGATTTCAGCGGCGTCTATTCGCAGATA
TCCCGCTACTTCGCGCCCTGA
Translation:
MHKRTYLNACLVLALAAGASQASAAPGASEMAGDVAVLQASPASTGHARFANPNAATSAAGIHFAAPPARRV
ARAAPLAPKPGTPLQVGVGLKTATPEIDLATLEWIDTPDGRHTARFPISAAGAASLRAAIRLETRSGSLPDD
VLLHFAGAGKEIFEASGKDLSLNRPYWSPVIEGDTLTVELVLPANLQPGDLRLSVPQVSYFADSLYKAGYRD
GFGASGSCEVDAVCATQSGTRAYDNATAAVAKMVFTSSADGGSYICTGTLLNNGNSPKRQLFWSAAHCIEDQ
ATAATLQTIWFYNTTQCYGDASTINQSVTVLTGGANILHRDAKRDTLLLELKRTPPAGVFYQGWSATPIANG
SLGHDIHHPRGDAKKYSQGNVSAVGVTYDGHTALTRVDWPSAVVEGGSSGSGLLTVAGDGSYQLRGGLYGGP
SYCGAPTSQRNDYFSDFSGVYSQISRYFAP*
AnnotationID:989GeneID:980
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 07:07:42
Gene Name:prpL
Confidence Code:1
GeneProduct:Pvds-regulated endoprotease, lysyl class
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAD11571.1| (AF083621) endoproteinase Arg-C precursor [Lysobacter enzymogenes]
          Length = 463

 Score =  353 bits (907), Expect = 1e-96
 Identities = 203/463 (43%), Positives = 263/463 (56%), Gaps = 17/463 (3%)

>gb|AAM37837.1| (AE011941) endoproteinase Arg-C [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 465

 Score =  344 bits (882), Expect = 8e-94
 Identities = 211/473 (44%), Positives = 265/473 (56%), Gaps = 39/473 (8%)

>gb|AAM42093.1| (AE012394) endoproteinase Arg-C [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 306

 Score =  285 bits (730), Expect = 3e-76
 Identities = 159/311 (51%), Positives = 192/311 (61%), Gaps = 18/311 (5%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:1963




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19105




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37003




  
Author/Investigator(s):
        Wilderman PJ, Vasil AI, Johnson Z, Wilson MJ, Cunliffe HE, Lamont IL, Vasil ML.





  
Title:
        Characterization of an endoprotease (PrpL) encoded by a PvdS-regulated gene in Pseudomonas aeruginosa.




  
PubMed:
        11500408


MedLine:
        




    
Source:
Infect Immun. 2001 Sep;69(9):5385-94.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11500408









           
Homologs By Global Alignment 

           

       



     
Gene ID:980
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
61755
                           gb|AAL47683.1|
                           (AY062882) protease IV [Pseudomonas aeruginosa]
                           462
                           99.78
                           99.99
                           0
                           2405.0
     

     
     
1751
                           PA4175_tr
                           translation of PA4175
                           462
                           98.91
                           99.13
                           0
                           2384.0
     

     
     
61756
                           gb|AAG07562.1|AE004834_2
                           (AE004834) Pvds-regulated endoprotease, lysyl class [Pseudomonas aeruginosa PAO1]
                           462
                           98.91
                           99.13
                           0
                           2384.0
     

     
     
61758
                           gb|AAM37837.1|
                           (AE011941) endoproteinase Arg-C [Xanthomonas axonopodis pv. citri str. 306]
                           493
                           44.62
                           56.18
                           59
                           925.0
     

     
     
61757
                           gb|AAD11571.1|
                           (AF083621) endoproteinase Arg-C precursor [Lysobacter enzymogenes]
                           487
                           42.71
                           54.20
                           49
                           932.0
     

     






      

          
GC ORFID: 43982How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4175Glimmer Score: 

          
Start: 4102557Stop: 4103945

          
Length: 1389


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4175 translation of PA4175Homolog Bit Score 922.0

          
Other Homologs:  t_PA4175 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATAAGAGAACGTACCTGAATGCATGCCTGGTTCTCGCGCTGGCTGCGGGCGCGAGCCAGGCCTCGGCC 
GCGCCCGGTGCGAGCGAAATGGCTGGCGACGTCGCCGTGCTCCAGGCTTCTCCGGCGAGCACCGGCCACGCC 
CGCTTCGCCAACCCCAACGCGGCGACCTCGGCGGCCGGCATTCACTTCGCCGCGCCCCCCGCCCGCCGCGTG 
GCCCGCGCCGCGCCGCTGGCGCCGAAACCGGGTACGCCGCTGCAAGTAGGCGTGGGCCTGAAGACGGCGACT 
CCGGAAATCGACCTGGCAACCCTCGAATGGATCGACACCCCGGACGGGCGCCACACCGCGCGCTTCCCGATC 
AGCGCCGCGGGGGCCGCCAGCCTACGCGCCGCGATTCGCCTGGAAACCCGCAGCGGCTCGCTGCCCGACGAC 
GTGCTGCTGCACTTCGCCGGCGCCGGCAAGGAAATCTTCGAGGCCAGCGGCAAGGACCTCTCGCTCAACCGT 
CCCTACTGGAGCCCGGTCATCGAGGGCGATACCCTGACCGTCGAACTGGTGCTGCCGGCCAACCTGCAACCG 
GGCGACCTGCGCCTGTCGGTACCCCAGGTATCGTATTTCGCCGACTCCCTGTACAAGGCCGGCTACCGCGAC 
GGCTTCGGCGCCAGCGGCAGCTGCGAGGTGGATGCGGTCTGCGCGACCCAGAGCGGCACGCGGGCCTACGAC 
AACGCCACCGCCGCGGTGGCGAAGATGGTCTTCACCAGCTCGGCGGACGGCGGCAGCTACATCTGCACCGGC 
ACCCTGCTGAACAACGGCAACTCGCCCAAGCGCCAGCTGTTCTGGTCGGCCGCGCACTGCATCGAGGACCAG 
GCCACCGCCGCGACGCTGCAGACCATCTGGTTCTACAACACCACCCAGTGCTACGGCGACGCCTCGACCATC 
AACCAGAGCGTCACCGTGCTGACCGGCGGGGCGAATATCCTGCACCGCGACGCGAAGCGCGACACCCTGCTG 
CTGGAACTCAAGCGTACTCCGCCGGCCGGCGTGTTCTACCAGGGCTGGAGCGCCACGCCGATCGCCAACGGC 
TCGCTCGGCCATGACATCCACCATCCGCGCGGCGACGCCAAGAAATACTCGCAGGGCAACGTCTCGGCAGTG 
GGCGTCACCTACGACGGGCATACCGCCCTGACCCGCGTCGACTGGCCGTCGGCGGTGGTCGAAGGCGGCTCG 
TCCGGCTCGGGCCTGCTGACCGTCGCCGGCGACGGTTCCTACCAGCTACGCGGTGGCCTGTACGGCGGCCCC 
TCGTACTGCGGCGCGCCCACCTCACAGCGCAATGACTACTTCTCCGATTTCAGCGGCGTCTATTCGCAGATA 
TCCCGCTACTTCGCGCCCTGA