ViewGene

Locus Name:
GeneID:
Location:

GeneID: 979

TrivialName: PA14_39480

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_39480

PAO1 Ortholog Locus:

Sequence Length: 2154

Protein Length: 717

Start: 3513093

Stop: 3515246

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAD06650.1| (AE001534) putative [Helicobacter pylori J99] Identities = 184/767 (23%), Positives = 339/767 (44%), Gaps = 82/767 (10%)

Sequence:

ATGATCGAAAAAATTCTGCTTCGCAACGTCTCCAGCTACTCTCCAGACTCAGCGGTATCCATTGCCCCGCTT
AAGCGCGTGAGTTTGTTCTATGGCCATAACGGGACGGGCAAGACCACTATCAGTAACTTCCTTCAGGCCCCT
GATGAGGCCTGCTACAGCGTTTGCGGCGTGGAGCCAGTAAAGGTTGGCCGGGAGATCCTAGTCTACAACCAT
GCATTCATGGAGAAAAATTTCCATGAAGCCGCATCCCAGCCAGGGGTCTTCACCCTCAATGAGGGCAACATT
GAGGCGGAAGCTGCCCTCGCAGTGGCCGAGAAAGCAATCGCTGAGCTGACGATCGCCCATGATACTGAAATG
GAGAAGGGCATTAACTGCAAGAATGCTCAGCAGCAAGCTCATGAGGCGCTACTGGACAGTGTATGGAAGCCT
AAGCGTGGCTTCGATAACACCGCTTTGGCTTACTGCTTCAGGTCGCTCAACACCAAAGAGCGTTTACTTGAT
GCAGTCCGAAGCGTCCAGCTTGTGGCAACCTCTGACACCGCTCAGGGGCTACTCAGCGAGGCGGCAGAACTT
AACGAGGCCAGTGATAAAGAGCTGCCCGGAATCGCGCCAATCACCTTCCAGGCGGGTAAGCTAGAAACCGAT
CCGATCATGCAGGAAGTCATCACTGGGTCAGGCGATTCCTACCTTTCTGCGTTCATTCAGCAACTGGGAAAT
TCGGATTGGGTCAAGCAGGCACTGCGCTATGAGGTCGAGGCAAAAGACCAGTGCCCACTATGCCAGCAGTCC
TTGCCGCAGGATTTCTATACTGAAATTCGTAAAGTCTTCGATAAAACCTATCAGCAGCGCATTGATTTGCTG
CAGCAATTCGAAAGCCAATACCGAGACGCGGTGGATCAATTTCTGCGACGGTACGAGGCTCCGGAATATCAG
CTGCAAGCCATAAAGCTCCGTGTCACCAGACTTCACGCTGTCTTCCAGAAAAACCTGCAATCCCTCGCTACA
AAGCTCGCCAGTCCATCCCTTATGATTACGTTGGAGTCCACTGCAACATTGGTCGCAGAGTTGAACAGTGAG
ATCGCGGCTGAGCAACTGAAAATCGACGCTATCAATGCGAGGATAAAAAACAGGAAGCAGCATGAGGAGGAC
ATCAAGCGACGCTTCTGGAGCTGGTACAGAGCTTCGTGCGACGCGGCTTTCGTGGCATTCGAAAAGGTCGAT
AAGGAGCAGGGGCGCCAACGCCAGGCCGCCAAGGATGAGGTTCAGTCTCTGCGGGATCGCATTCAGGCACAA
CGCGATATCATTGCCCAATCCAGGGCGGCCATCAGGAACATCGACCAGTCGGTCGAGAGTATCAATAATTGG
TTGCGGGTGTTGGGTCTGAAGGGCTTCGCGCTGATTAAAGAAGAGGGCCCGGTGCCACAATATCGTCTTGAA
CGTCCTGGCCAGACTGAAGGGGTGTTCAGAACGCTAAGTGAGGGCGAAAAAACGCTGATCTCGTTCCTCTAC
TTCCTTGAGGTCTGCAATGGCGAGCTGGACACAGCTAGTGGGACGCTCAAGCGTGATCGCATCATCGTCATC
GATGACCCAATATCGAGCCTCTCCCATAACTATGTCTACGATATTGCGTCGCTGATCAGGCGGCAGGTGCTC
ATCCCGAGAGACCGGTTCAAACAGGTGATCATTCTGACGCACAACCTTTTCTTCTTCCACGAAATGGTCAAG
CTCTTGAAGGATGACGGAGAAAAATCCTTGGCAATGTTCCGGATCACCAAGTCCGAATACAGCTCGGTCGTG
ACCATGGAAGAGCGCGAAATCCAGAACGACTACCAAGCCTTCTGGCAAACCATCAAGGACGCGTTGCAAGGC
CGAACTTCCCCTAACGTGATCCCGAACATGATGCGCAATATCTTGGAGTACTACTTCAGCTTCGTGCATCAG
ACGCAAAGCCTGCGCCAAGCGTTGACTGATCTTAGCGAGGAGAATCCAGAGTTCAGAGCGCTTTACCGATAC
ATCAACCGTGAATCACATGCTGACTCGGTTAACCTAACTGACTTCGGCGAGATCGATCCGGAGATCTTCGTC
GCGCGGTTTAAGGATGTGTTCATCAGAACCAATTTCGAATCTCACTTCGACAAGATGATGGCATAG

Translation:

MIEKILLRNVSSYSPDSAVSIAPLKRVSLFYGHNGTGKTTISNFLQAPDEACYSVCGVEPVKVGREILVYNH
AFMEKNFHEAASQPGVFTLNEGNIEAEAALAVAEKAIAELTIAHDTEMEKGINCKNAQQQAHEALLDSVWKP
KRGFDNTALAYCFRSLNTKERLLDAVRSVQLVATSDTAQGLLSEAAELNEASDKELPGIAPITFQAGKLETD
PIMQEVITGSGDSYLSAFIQQLGNSDWVKQALRYEVEAKDQCPLCQQSLPQDFYTEIRKVFDKTYQQRIDLL
QQFESQYRDAVDQFLRRYEAPEYQLQAIKLRVTRLHAVFQKNLQSLATKLASPSLMITLESTATLVAELNSE
IAAEQLKIDAINARIKNRKQHEEDIKRRFWSWYRASCDAAFVAFEKVDKEQGRQRQAAKDEVQSLRDRIQAQ
RDIIAQSRAAIRNIDQSVESINNWLRVLGLKGFALIKEEGPVPQYRLERPGQTEGVFRTLSEGEKTLISFLY
FLEVCNGELDTASGTLKRDRIIVIDDPISSLSHNYVYDIASLIRRQVLIPRDRFKQVIILTHNLFFFHEMVK
LLKDDGEKSLAMFRITKSEYSSVVTMEEREIQNDYQAFWQTIKDALQGRTSPNVIPNMMRNILEYYFSFVHQ
TQSLRQALTDLSEENPEFRALYRYINRESHADSVNLTDFGEIDPEIFVARFKDVFIRTNFESHFDKMMA*

AnnotationID:988 GeneID:979

AnnotatorUID: danlee

Modification Date/Time: 2005-10-10 13:01:01

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG4694

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|63256587|gb|AAY37683.1|  similar to Uncharacterized protein conserved in bacteria [Pseudomonas syringae pv. syringae B728a]
     Length=643
     Score =  823 bits (2125),  Expect = 0.0
     Identities = 409/643 (63%), Positives = 498/643 (77%), Gaps = 0/643 (0%)

gi|58424248|gb|AAW73285.1|  hypothetical protein XOO0031 [Xanthomonas oryzae pv. oryzae KACC10331]
     Length=658
     Score =  276 bits (705),  Expect = 3e-72
     Identities = 207/669 (30%), Positives = 319/669 (47%), Gaps = 47/669 (7%)

gi|67939074|ref|ZP_00531587.1|  H. pylori predicted coding region HP1142 [Chlorobium phaeobacteroides BS1]
     Length=743
     Score =  220 bits (561),  Expect = 1e-55
     Identities = 197/747 (26%), Positives = 338/747 (45%), Gaps = 49/747 (6%)

Structural Features:

COG4694, Uncharacterized protein conserved in bacteria [Function unknown].
             CD-Length = 758 residues,  99.7% aligned
             Score =  137 bits (345), Expect = 7e-33

Genomic Context:

Comment:

ReferenceID:1961

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19103